Carg12508-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12508-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-CH-type domain-containing protein
Location	Carg_Chr14: 428421 .. 430525 (+)
Sequence length	807
RNA-Seq Expression	Carg12508-RA
Synteny	Carg12508-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTCCGGAAGTTTCCCAATCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGTGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGAGGTTGGGGTTGCTTCGGATTCTCGCCGAGTTTCGTCGGTTTCGGTTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCCGGAGTCCCAATCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGTAAGTCTACTCCCTGTTTCCCATGGCTTCTGATTATTTTTTCACTCATGTTATGTTATGTTATGCTTGATAGTTCTTTGAGTACATATTTTCAGATTATTTTCTTGCGGCTCTACTCTAGCATGTTCTTGTGATAAGCATCTTCTGAGATAATCCTCATGGGGTTCCACTATTCATTAATTTAAGGAGGCTTAAAGGAAAACTCTTTAGTGTAATGAGCTTGAAGTTGCAGATTAAAGAATGCTTACTTAGAGGGAGCGCTTAGACGAACAAAAAGAAAAAGTGCATTACACTGATTATTCCTTCTTCCCTGTCCCTTTTCTGATGGCTTAGGAATCTCTCTCTCTTTGTCTCTTCGCCCCCTCTGTAAAGTGGATACTCCATTTGCTAGTCTGAACCATGATTCAGTACAAGTGGGGAAAGATTATGTTGATCACACAACAGATCATAAAAGGATCTCTAGTTTAGTTTTGAGTTTTCCGAACTTTTTTAGTCACACAGCTAGCTCTTTCAGTTCCTTGATCTCATGAACGAACATATCCAAATGGTAGTTCATCTTGTGTCAACAAACAGTCAGTTGCCCCATTAGATAAATATATGGAACATGGAATTTGTTTCAGTACACTTCTCATGGATCAGATTCATGCCTTTGATCTAACTTTCCTTACAACTACAATAGTCTTTGTTTCGATCGGCTTGGCTCGATCTAAGTCACTGTTCGAGAGTTCACTGTACTGAGCTGCTCTACAAGATTAATATTCCACAATGCTTATCTTCAGGGAAAATAATGTTGCGAAGTTGGTTGAATTTTGTATATCTGTTGTGATATATACTAAAAAAGATGATATCAGGCTGTCAAAATGTAAAGGATTAGGATATAATACCATCTATTGTGGAAGCAAGACGATGAATATTTGATTTGATGTTAAAAGTACTTTTCCAATGTCATGAATAGGATGTGTCAGTACACATTTTGAAAAAGGGTTATTTGTTAATCACTGAGAAACGAACAGATGATATGTTCTTGCACTTTGCTCCGAATTCCACTGATAAGTGATTTGAAGACTCACAAAAAGGTTCCACAGTATTGTTCATGGACAGTGATTCTGAACATGGGTGATTACAGCCATCTTTAATCAACTATTGCTGGTGTGTGTTTCAATCAATGTCTTGTTAATTGGTGGTCTTACATTTGCTGCATTGCATGATAGATTTACATAATGTGATTTTTGTGTGCATATTTGTTCCTTTGGCTCACTTTATTTATTATTCCTAATCTTCTTGAGCCTTCGCATTAGGACATGTGAGATTTGCCATTCCATGGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGATCAGTCTAATGAATCCAACAACGCCCCCTCAACAACTGCAGCTGCTGCATCAACTCCCCCATCGGACACCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTATTTGCTTTTGTTGTATCTTGGCTGTTTCACTTCAATGTGCCCACGTAGCGAATCGGGGGAAATCCGATCAAGGAACTTGCAGAAGTTGTAGCTGCAAAAGACCCTCCCTCCAGAGAATTGACTACAAAGTGTCCACATGTACCTCTCCCAACATTCTCC

mRNA sequence

ATGGCGCCTCCGGAAGTTTCCCAATCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGTGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGAGGTTGGGGTTGCTTCGGATTCTCGCCGAGTTTCGTCGGTTTCGGTTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCCGGAGTCCCAATCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATGGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGATCAGTCTAATGAATCCAACAACGCCCCCTCAACAACTGCAGCTGCTGCATCAACTCCCCCATCGGACACCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTATTTGCTTTTGTTGTATCTTGGCTGTTTCACTTCAATGTGCCCACGTAGCGAATCGGGGGAAATCCGATCAAGGAACTTGCAGAAGTTGTAGCTGCAAAAGACCCTCCCTCCAGAGAATTGACTACAAAGTGTCCACATGTACCTCTCCCAACATTCTCC

Coding sequence (CDS)

ATGGCGCCTCCGGAAGTTTCCCAATCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGTGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGAGGTTGGGGTTGCTTCGGATTCTCGCCGAGTTTCGTCGGTTTCGGTTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCCGGAGTCCCAATCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATGGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGATCAGTCTAATGAATCCAACAACGCCCCCTCAACAACTGCAGCTGCTGCATCAACTCCCCCATCGGACACCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTATTTGCTTTTGTTGTATCTTGGCTGTTTCACTTCAATGTGCCCACGTAG

Protein sequence

MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRFSFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNESNNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT

Homology

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BLAST of Carg12508-RA vs. NCBI nr
Match: KAG7017255.1 (hypothetical protein SDJN02_19118, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 467.2 bits (1201), Expect = 8.0e-128
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF
Sbjct: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES
Sbjct: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT
Sbjct: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231

[Close]

BLAST of Carg12508-RA vs. NCBI nr
Match: XP_022934902.1 (uncharacterized protein LOC111441939 [Cucurbita moschata])

HSP 1 Score: 455.7 bits (1171), Expect = 2.4e-124
Identity = 224/231 (96.97%), Postives = 228/231 (98.70%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSD DEGSCPSQFLSTNGGSYDEFRF
Sbjct: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDPDEGSCPSQFLSTNGGSYDEFRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+PIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHS+AQNIVEPNEVELT+QSNES
Sbjct: 121 SGIPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA STTA AASTPPSD+QSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT
Sbjct: 181 NNASSTTAVAASTPPSDSQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231

[Close]

BLAST of Carg12508-RA vs. NCBI nr
Match: XP_022983479.1 (uncharacterized protein LOC111482069 [Cucurbita maxima])

HSP 1 Score: 455.3 bits (1170), Expect = 3.2e-124
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF
Sbjct: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           SFVSQPEVGVA DSRRVSSV VHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  SFVSQPEVGVAPDSRRVSSVEVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+P+ELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHS+AQNIVEPNEVELT+QSNES
Sbjct: 121 SGIPVELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA STTA AASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT
Sbjct: 181 NNASSTTAVAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231

[Close]

BLAST of Carg12508-RA vs. NCBI nr
Match: XP_023526520.1 (uncharacterized protein LOC111789997 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 450.3 bits (1157), Expect = 1.0e-122
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           MAPPEVSQS IDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF
Sbjct: 1   MAPPEVSQSHIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           SFVSQP VGVASDSRRVSSVS HSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  SFVSQPGVGVASDSRRVSSVSAHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+PIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHS+AQNIVEPNEVELTDQSNES
Sbjct: 121 SGIPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTDQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA STTA AAST PSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT
Sbjct: 181 NNASSTTAVAASTHPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231

[Close]

BLAST of Carg12508-RA vs. NCBI nr
Match: KAG6580505.1 (hypothetical protein SDJN03_20507, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.5 bits (1116), Expect = 5.8e-118
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF
Sbjct: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES
Sbjct: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACM 216
           NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACM
Sbjct: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACM 215

[Close]

BLAST of Carg12508-RA vs. ExPASy TrEMBL
Match: A0A6J1F436 (uncharacterized protein LOC111441939 OS=Cucurbita moschata OX=3662 GN=LOC111441939 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.2e-124
Identity = 224/231 (96.97%), Postives = 228/231 (98.70%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSD DEGSCPSQFLSTNGGSYDEFRF
Sbjct: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDPDEGSCPSQFLSTNGGSYDEFRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+PIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHS+AQNIVEPNEVELT+QSNES
Sbjct: 121 SGIPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA STTA AASTPPSD+QSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT
Sbjct: 181 NNASSTTAVAASTPPSDSQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231

[Close]

BLAST of Carg12508-RA vs. ExPASy TrEMBL
Match: A0A6J1J7I4 (uncharacterized protein LOC111482069 OS=Cucurbita maxima OX=3661 GN=LOC111482069 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.5e-124
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF
Sbjct: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           SFVSQPEVGVA DSRRVSSV VHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  SFVSQPEVGVAPDSRRVSSVEVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+P+ELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHS+AQNIVEPNEVELT+QSNES
Sbjct: 121 SGIPVELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA STTA AASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT
Sbjct: 181 NNASSTTAVAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231

[Close]

BLAST of Carg12508-RA vs. ExPASy TrEMBL
Match: A0A0A0LAC9 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G733180 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.3e-112
Identity = 204/231 (88.31%), Postives = 215/231 (93.07%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           M P EVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSC SQF STNGGSYDE+RF
Sbjct: 1   MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           +FVSQPEVGV SDSRRVSSVS  SVEVENENGI+EIKVH AKVERDCRICHLGLESNSQE
Sbjct: 61  AFVSQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+PIELGCSCKDDLA AHKHCAETWFKIKGNKTCEICHS+A+NI+ PNEVELT+QSNES
Sbjct: 121 SGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA STT  AAS P SD+QSFW GHRFLNFLLACMVFAFV+SWLFHFNVP+
Sbjct: 181 NNASSTTTVAASIPSSDSQSFWCGHRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Carg12508-RA vs. ExPASy TrEMBL
Match: A0A1S3B5A7 (uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.3e-112
Identity = 203/231 (87.88%), Postives = 214/231 (92.64%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           M P EVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSC SQF STNGGSYDE+RF
Sbjct: 1   MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           +FVSQPEVGV  DSRRVSSVS  SVEVENENGI+EIKVH AKVERDCRICHLGLESNSQE
Sbjct: 61  AFVSQPEVGVVPDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+PIELGCSCKDDLA AHKHCAETWFKIKGNKTCEICHS+A+NI+ PNEVELT+QSNES
Sbjct: 121 SGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA STT  AAS P SD+ SFWRGHRFLNFLLACMVFAFV+SWLFHFNVP+
Sbjct: 181 NNASSTTTVAASIPSSDSHSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Carg12508-RA vs. ExPASy TrEMBL
Match: A0A6J1CWG7 (uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015024 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 201/231 (87.01%), Postives = 216/231 (93.51%), Query Frame = 0


Query: 1   MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRF 60
           M  PEVSQSDIDLEQGNHRRSVSGSD+SADCSVYFSDADEGSC SQF STNGGSYDE+RF
Sbjct: 1   MPTPEVSQSDIDLEQGNHRRSVSGSDVSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRF 60

Query: 61  SFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQE 120
           +FV+QPEVGV SDSRRVSSVS  SVEVENENGI+EIKVHLAKVERDCRICHLGLESNSQE
Sbjct: 61  AFVAQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQE 120

Query: 121 SGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNES 180
           SG+PIELGCSCKDDLA AHKHCAETWFKI+GNKTCEICHS+A+NI+ P+EVELT+QS ES
Sbjct: 121 SGIPIELGCSCKDDLAAAHKHCAETWFKIRGNKTCEICHSIARNILGPHEVELTEQSTES 180

Query: 181 NNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           NNA ST A AAS P SD+QSFWRGHRFLNFLLACMVFAFV+SWLFHFNVP+
Sbjct: 181 NNASSTAAVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Carg12508-RA vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 4.1e-53
Identity = 102/179 (56.98%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 53  GSYDEFRFSFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHL 112
           G  +  R S   + E  +  D  R S+ SV SVE++ E G+ E  VHL++ ERDCRICH+
Sbjct: 25  GDGEPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLELGLPEKVVHLSQSERDCRICHM 84

Query: 113 GLESNSQESGVPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVE 172
            L++ + ESGVPIELGCSCK DLA AHKHCAETWFKIKGNK CE+C S+A N+V   EVE
Sbjct: 85  SLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVGSVEVE 144

Query: 173 LTDQSNESNNAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
             +  NE+N   + T   +     + +SFW+GHRFLNFLLACMVFAFV+SWLFHFNVP+
Sbjct: 145 SEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 203

[Close]

BLAST of Carg12508-RA vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-43
Identity = 110/228 (48.25%), Postives = 140/228 (61.40%), Query Frame = 0


Query: 9   SDIDLEQGN----HRRSVSGSDLSADCSVYFSDA-DEGSCPSQFLSTNGGSYDEFRFSFV 68
           +DIDLEQG     HRRS+ GSD+    SVY+SD  D  SC S F ST GGSY+       
Sbjct: 3   TDIDLEQGGAFGYHRRSLDGSDV----SVYYSDGEDVMSCYSYFYSTTGGSYEY------ 62

Query: 69  SQPEVGVASDSRRVSSV-SVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESG 128
                     SR+VSSV S  S E+++++         A  E+DCRICHLG+E++    G
Sbjct: 63  ------EGDQSRKVSSVMSPSSSEIDDDDA-------TAPPEKDCRICHLGVETS---GG 122

Query: 129 VPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNE-VELTDQSNESN 188
             IELGCSCKDDLAVAH+ CAETWFKIKG+KTCEIC S+A+N+   NE V  T +  E  
Sbjct: 123 GAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARNVGGANEMVGSTMEERELR 182

Query: 189 NAPSTTAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNV 230
           N    TAA      +  ++ W+  R +N +LACMVF F +SW+FHF+V
Sbjct: 183 NG-EETAAGEGGGATVVENRWQPQRVVNLVLACMVFGFFISWIFHFHV 203

[Close]

BLAST of Carg12508-RA vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 5.7e-39
Identity = 95/225 (42.22%), Postives = 123/225 (54.67%), Query Frame = 0


Query: 9   SDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRFSFVSQPEV 68
           S IDLE G+  R    SD+S +        D  SC   +      +   F   F    ++
Sbjct: 7   SHIDLENGSGERQYRPSDVSGE--------DSSSCDYDY--DFHSAVRSFCGEFEIADDL 66

Query: 69  GVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGVPIELG 128
              +D+  V+S S+                     E+DCRICHLGLES+  E G P+ LG
Sbjct: 67  DDETDTESVASGSIR-----------------GSPEKDCRICHLGLESSRHECGDPMVLG 126

Query: 129 CSCKDDLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVE-PNEV-ELTDQSNESNNAPST 188
           CSCKDDL   HK CA+TWFKIKGNKTCEIC S+AQN  +  NE+ + T ++N  +     
Sbjct: 127 CSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGN 186

Query: 189 TAAAASTPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 232
           T    +T  SD +   RG+RFLNFLL CMV AFV+SW FHFN+P+
Sbjct: 187 TPTMVATSDSDDRRLCRGNRFLNFLLTCMVCAFVISWFFHFNLPS 204

[Close]

BLAST of Carg12508-RA vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-30
Identity = 72/158 (45.57%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 105 RDCRICHLGLESNSQES-------------------------------GVPIELGCSCKD 164
           RDCRICHL LE+N +                                 G+P++LGCSCK 
Sbjct: 79  RDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKG 138

Query: 165 DLAVAHKHCAETWFKIKGNKTCEICHSMAQNIVEPNEVELTDQSNESNNAPSTTAAAA-- 224
           DL VAH  CAETWFKIKGN TCEIC +MA N+         +QSN  + A + + AAA  
Sbjct: 139 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVA-------GEQSNPESTASTHSQAAAGQ 198

Query: 225 STPPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNV 230
           S   ++ +  W G   +NFLLA MVFAFVVSWLFHF V
Sbjct: 199 SLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

[Close]

BLAST of Carg12508-RA vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18
Identity = 56/145 (38.62%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 9   SDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRFSFVSQPEV 68
           S IDLE G+  R    SD+S +        D  SC   +      +   F   F    ++
Sbjct: 7   SHIDLENGSGERQYRPSDVSGE--------DSSSCDYDY--DFHSAVRSFCGEFEIADDL 66

Query: 69  GVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGVPIELG 128
              +D+  V+S S+                     E+DCRICHLGLES+  E G P+ LG
Sbjct: 67  DDETDTESVASGSIR-----------------GSPEKDCRICHLGLESSRHECGDPMVLG 124

Query: 129 CSCKDDLAVAHKHCAETWFKIKGNK 154
           CSCKDDL   HK CA+TWFKIKGNK
Sbjct: 127 CSCKDDLGYVHKQCADTWFKIKGNK 124

The following BLAST results are available for this feature:

BLAST of Carg12508-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017255.1	8.0e-128	100.00	hypothetical protein SDJN02_19118, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022934902.1	2.4e-124	96.97	uncharacterized protein LOC111441939 [Cucurbita moschata]	[more]
XP_022983479.1	3.2e-124	96.54	uncharacterized protein LOC111482069 [Cucurbita maxima]	[more]
XP_023526520.1	1.0e-122	96.54	uncharacterized protein LOC111789997 [Cucurbita pepo subsp. pepo]	[more]
KAG6580505.1	5.8e-118	100.00	hypothetical protein SDJN03_20507, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg12508-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12508-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F436	1.2e-124	96.97	uncharacterized protein LOC111441939 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1J7I4	1.5e-124	96.54	uncharacterized protein LOC111482069 OS=Cucurbita maxima OX=3661 GN=LOC111482069...	[more]
A0A0A0LAC9	1.3e-112	88.31	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G73318...	[more]
A0A1S3B5A7	2.3e-112	87.88	uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=...	[more]
A0A6J1CWG7	1.1e-111	87.01	uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg12508-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	4.1e-53	56.98	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.2e-43	48.25	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	5.7e-39	42.22	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	6.3e-30	45.57	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	1.5e-18	38.62	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 106..159 e-value: 2.2E-18 score: 77.1
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 107..158 e-value: 8.4E-10 score: 38.6
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 99..165 score: 18.874094
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 93..168 e-value: 2.2E-15 score: 58.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..196
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 8..230
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 8..230
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 107..159 e-value: 2.65826E-12 score: 57.7224
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 104..162

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12508	Carg12508	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12508-RA:1	Carg12508-RA:1	exon
Carg12508-RA:2	Carg12508-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12508-RA:cds	Carg12508-RA:cds	CDS
Carg12508-RA:cds	Carg12508-RA:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12508-RA:three_prime_utr	Carg12508-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12508-RA	Carg12508-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding