Carg12383-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12383-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclin-dependent protein kinase inhibitor SMR4-like
Location	Carg_Chr01: 3299159 .. 3299365 (-)
Sequence length	207
RNA-Seq Expression	Carg12383-RA
Synteny	Carg12383-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGATACCGAACGCCGGAGCGACAGGAGTTTCGAATTCAGCCGGCAAAGGTGCCACCGCCGCCGCCGAGGAAAAAGGCGGTTGCGGCGGCGAAGAAGCGGGAGGCTCCAGCGAATGGATATTTTCAACTGCCTGACGATCTTGAAGTATATTTTTTAGTGGTTCCTAGAGTGGCCGGCGGCGGTGATCTGAGTGGTGGCTAG

mRNA sequence

ATGGAGGGATACCGAACGCCGGAGCGACAGGAGTTTCGAATTCAGCCGGCAAAGGTGCCACCGCCGCCGCCGAGGAAAAAGGCGGTTGCGGCGGCGAAGAAGCGGGAGGCTCCAGCGAATGGATATTTTCAACTGCCTGACGATCTTGAAGTATATTTTTTAGTGGTTCCTAGAGTGGCCGGCGGCGGTGATCTGAGTGGTGGCTAG

Coding sequence (CDS)

ATGGAGGGATACCGAACGCCGGAGCGACAGGAGTTTCGAATTCAGCCGGCAAAGGTGCCACCGCCGCCGCCGAGGAAAAAGGCGGTTGCGGCGGCGAAGAAGCGGGAGGCTCCAGCGAATGGATATTTTCAACTGCCTGACGATCTTGAAGTATATTTTTTAGTGGTTCCTAGAGTGGCCGGCGGCGGTGATCTGAGTGGTGGCTAG

Protein sequence

MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVAGGGDLSGG

Homology

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BLAST of Carg12383-RA vs. NCBI nr
Match: KAG7036940.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.8 bits (351), Expect = 8.6e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 60
          MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA
Sbjct: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 60

Query: 61 GGGDLSGG 69
          GGGDLSGG
Sbjct: 61 GGGDLSGG 68

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BLAST of Carg12383-RA vs. NCBI nr
Match: KAG6607256.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 60
          MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRV 
Sbjct: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVD 60

Query: 61 GGGDLSGG 69
           GGDLSGG
Sbjct: 61 AGGDLSGG 68

[Close]

BLAST of Carg12383-RA vs. NCBI nr
Match: KAF8022732.1 (hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 34/59 (57.63%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 61
          +G  TP R EFRI  A  PPPPPRKK +   KKR  P NGYFQ PDDLE+ F    R A
Sbjct: 20 DGCSTPTRGEFRIPAASAPPPPPRKKPLCGGKKRGPPKNGYFQAPDDLELLFAASKRQA 78

[Close]

BLAST of Carg12383-RA vs. NCBI nr
Match: KAA0067757.1 (hypothetical protein E6C27_scaffold352G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREA--PANGYFQLP-DDLEVYFL 55
          M+G+RTPER EFRI PA +PPPP +K  V   K REA    NGYFQLP DDLE +FL
Sbjct: 1  MDGFRTPERPEFRIPPASLPPPPRKKPVVVVKKMREAVPENNGYFQLPADDLERFFL 57

[Close]

BLAST of Carg12383-RA vs. NCBI nr
Match: XP_018720939.1 (cyclin-dependent protein kinase inhibitor SMR4 [Eucalyptus grandis] >KCW85522.1 hypothetical protein EUGRSUZ_B02319 [Eucalyptus grandis])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 61
          +G  TP R EFRI  A  PPPPPRKK   + KKR  P +GYFQ PDDLE+ F    R A
Sbjct: 20 DGCATPTRGEFRIPAASAPPPPPRKKQSCSGKKRGPPKDGYFQAPDDLELLFAAGKRQA 78

[Close]

BLAST of Carg12383-RA vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPR 59
          EG  TP    +RI  A V PPPPRKK +   +KR+ P NGYFQ P DLE  F   PR
Sbjct: 13 EGCTTPRSTMYRIPVASVCPPPPRKK-LMVVRKRDPPRNGYFQ-PPDLETLFYAQPR 67

[Close]

BLAST of Carg12383-RA vs. ExPASy TrEMBL
Match: A0A5A7VKP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00780 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.5e-08
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1  MEGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREA--PANGYFQLP-DDLEVYFL 55
          M+G+RTPER EFRI PA +PPPP +K  V   K REA    NGYFQLP DDLE +FL
Sbjct: 1  MDGFRTPERPEFRIPPASLPPPPRKKPVVVVKKMREAVPENNGYFQLPADDLERFFL 57

[Close]

BLAST of Carg12383-RA vs. ExPASy TrEMBL
Match: A0A059D4M4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-08
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 61
          +G  TP R EFRI  A  PPPPPRKK   + KKR  P +GYFQ PDDLE+ F    R A
Sbjct: 20 DGCATPTRGEFRIPAASAPPPPPRKKQSCSGKKRGPPKDGYFQAPDDLELLFAAGKRQA 78

[Close]

BLAST of Carg12383-RA vs. ExPASy TrEMBL
Match: W9RUH3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVA 61
          +G  TP+R E RI+    PPPPPRKK   A KKR+ P NGYF  P DLE +F + PR A
Sbjct: 17 DGCATPKRDECRIREMSAPPPPPRKKPFVAGKKRDRPKNGYFH-PPDLEAFFAMAPRPA 74

[Close]

BLAST of Carg12383-RA vs. ExPASy TrEMBL
Match: A0A7I8K045 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPR 59
          EG+ TP+R E RI      PPPPRKK V   K+RE P NGYFQ P DLE  F +VPR
Sbjct: 11 EGWETPKRVECRIPVVFACPPPPRKKPVVFTKRREPPKNGYFQ-PPDLEALFKLVPR 66

[Close]

BLAST of Carg12383-RA vs. ExPASy TrEMBL
Match: A0A7I8K6X4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_03003601 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKA-VAAAKKREAPANGYFQLPDDLEVYFLVVPR 59
          EG++TP R E RI  A   PPPPRKK+ V  AK+RE P NGYFQ P DLE+ F ++PR
Sbjct: 11 EGWQTPRRMECRIPAAFPCPPPPRKKSPVVFAKRREPPKNGYFQ-PPDLEMLFSLLPR 67

[Close]

BLAST of Carg12383-RA vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPR 59
          EG  TP    +RI  A V PPPPRKK +   +KR+ P NGYFQ P DLE  F   PR
Sbjct: 13 EGCTTPRSTMYRIPVASVCPPPPRKK-LMVVRKRDPPRNGYFQ-PPDLETLFYAQPR 67

The following BLAST results are available for this feature:

BLAST of Carg12383-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036940.1	8.6e-30	100.00	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAG6607256.1	2.1e-28	97.06	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAF8022732.1	1.4e-08	57.63	hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata]	[more]
KAA0067757.1	9.3e-08	63.16	hypothetical protein E6C27_scaffold352G00780 [Cucumis melo var. makuwa]	[more]
XP_018720939.1	1.2e-07	55.93	cyclin-dependent protein kinase inhibitor SMR4 [Eucalyptus grandis] >KCW85522.1 ...	[more]

BLAST of Carg12383-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	1.8e-06	52.63	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg12383-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKP1	4.5e-08	63.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A059D4M4	5.9e-08	55.93	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV...	[more]
W9RUH3	1.0e-07	54.24	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1	[more]
A0A7I8K045	1.1e-06	57.89	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV...	[more]
A0A7I8K6X4	2.5e-06	58.62	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_03003601 PE=4 SV...	[more]

BLAST of Carg12383-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	1.3e-07	52.63	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33142:SF56	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5	coord: 2..58
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 2..58

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12383	Carg12383	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12383-RA:1	Carg12383-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12383-RA:cds	Carg12383-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12383-RA	Carg12383-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication