Carg12128-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12128-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein
Location	Carg_Chr11: 2366496 .. 2367893 (-)
Sequence length	991
RNA-Seq Expression	Carg12128-RA
Synteny	Carg12128-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAGATCCATGATTCGGCCATTTTGTGCTTTCAGTGTATACTTTCTCTTTTCTTTAATTTCATTGTTGGAATTTGCAATAGTGAGATGTGATAGTTTTACATCGCATTTGACTGCCGCTTTATGTCTTGGCTTCTTTTGTTTTCCTTCATACAGTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCAAGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTAAGTACTTCCTTTTAAGGACGGACAATTTATTACTTGGGAGTAATGTATGAATGTAGTTCGAGTTTATGTAAAACATAAATGGCTGAACTTGTTAATGTAAAATTGTGTTCTTCAGCACCGAAAAGTGTGTTTCTTTTTTGTTTTAATGTGAGGATGAAGCTGAGGCCAGATTCTTGGAAATTAGTAGCTTAAGTTTGACACTCATAAGTCTTCTTCTAGTTCCATCCTCTACGAAGGAGCTGGAGATTAATCTTGGGGATAGATGGAAGTCATTTTTCCATTTTCATGATTAATAAGCTCAGTACACTTCTTGTTCACATATCCGTATATGGTATGAATGGTATGCAGGTTTTAACTTGGGATTAATCACTGGCGAAATGCATTAAAGTTCGCTCATTTTTCAGGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAGAGCTTAATCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGTGATAAAAGATGAAGCACTTCTGCTCTCAGATTTGTTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACATTTAAACAACTTTCGACCTGCAAAGTTTGATGTTGTAAACGTCAAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAATAAAAGTCGAATTCCATTACGATTCAGGAACTTGTTCTAAATGTTGAATTTGAGTTCGGAATGTGTTTAAAATGAGATATAAATGAAGTTGGAAGCAGTAGAAGAAAAGAAACGACTGTTTTTGCTGTTAATAATAGCAAGCAGTGGATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCGTATAAACCACCAACAAGAATCCACCAATTGAACTATCC

mRNA sequence

TGTAGATCCATGATTCGGCCATTTTGTGCTTTCAGTGTATACTTTCTCTTTTCTTTAATTTCATTGTTGGAATTTGCAATAGTGAGATGTGATAGTTTTACATCGCATTTGACTGCCGCTTTATGTCTTGGCTTCTTTTGTTTTCCTTCATACAGTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCAAGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAGAGCTTAATCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGTGATAAAAGATGAAGCACTTCTGCTCTCAGATTTGTTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACATTTAAACAACTTTCGACCTGCAAAGTTTGATGTTGTAAACGTCAAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAATAAAAGTCGAATTCCATTACGATTCAGGAACTTGTTCTAAATGTTGAATTTGAGTTCGGAATGTGTTTAAAATGAGATATAAATGAAGTTGGAAGCAGTAGAAGAAAAGAAACGACTGTTTTTGCTGTTAATAATAGCAAGCAGTGGATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCGTATAAACCACCAACAAGAATCCACCAATTGAACTATCC

Coding sequence (CDS)

ATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCAAGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAG

Protein sequence

MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

Homology

[Close]

BLAST of Carg12128-RA vs. NCBI nr
Match: KAG7021783.1 (rpmJ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Carg12128-RA vs. NCBI nr
Match: XP_022933442.1 (uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 uncharacterized protein LOC111793393 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Carg12128-RA vs. NCBI nr
Match: XP_022971996.1 (uncharacterized protein LOC111470644 [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Carg12128-RA vs. NCBI nr
Match: XP_038879717.1 (uncharacterized protein LOC120071478 [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE P PSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPPPSLFSRSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           + PSHSSRTGLASLIPQKHEPTML GWRMGLASIL KK+N
Sbjct: 61  LLPSHSSRTGLASLIPQKHEPTMLLGWRMGLASILLKKRN 100

[Close]

BLAST of Carg12128-RA vs. NCBI nr
Match: XP_022987917.1 (uncharacterized protein LOC111485318 [Cucurbita maxima])

HSP 1 Score: 181.0 bits (458), Expect = 5.0e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of Carg12128-RA vs. ExPASy Swiss-Prot
Match: P73300 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-11
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVRASVKKMC+ CR +RRRGRV + CSANPKHKQRQG
Sbjct: 1  MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Carg12128-RA vs. ExPASy Swiss-Prot
Match: B3WAJ5 (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Carg12128-RA vs. ExPASy Swiss-Prot
Match: Q035A6 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Carg12128-RA vs. ExPASy Swiss-Prot
Match: Q88XW3 (50S ribosomal protein L36 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVK MCE C+ +RR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Carg12128-RA vs. ExPASy Swiss-Prot
Match: A5VLI2 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MKVR SVKKMCE C+ V+R GRV + CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Carg12128-RA vs. ExPASy TrEMBL
Match: A0A6J1EZS5 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Carg12128-RA vs. ExPASy TrEMBL
Match: A0A6J1I4R0 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Carg12128-RA vs. ExPASy TrEMBL
Match: A0A6J1JBN8 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of Carg12128-RA vs. ExPASy TrEMBL
Match: A0A6J1CT08 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.1e-42
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE PSP LFSRSEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PS+S RTGLASLIPQKHEPT +FGWRMGLASIL KK N
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of Carg12128-RA vs. ExPASy TrEMBL
Match: A0A6J1HBF8 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQE 60

Query: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           I PSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]

BLAST of Carg12128-RA vs. TAIR 10
Match: AT5G20180.1 (Ribosomal protein L36 )

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-27
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQ 60
           MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--FPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           E+   P      GLASL+ ++  PT  FGWR GLASIL+K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Carg12128-RA vs. TAIR 10
Match: AT5G20180.2 (Ribosomal protein L36 )

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-27
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQ 60
           MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--FPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 101
           E+   P      GLASL+ ++  PT  FGWR GLASIL+K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Carg12128-RA vs. TAIR 10
Match: ATCG00760.1 (ribosomal protein L36 )

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-09
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 39
          MK+RASV+K+CE CR +RRRGR+ + CS NP+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVICS-NPRHKQRQG 37

The following BLAST results are available for this feature:

BLAST of Carg12128-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021783.1	4.2e-49	100.00	rpmJ [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022933442.1	2.1e-48	99.00	uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 unchar...	[more]
XP_022971996.1	3.0e-47	96.00	uncharacterized protein LOC111470644 [Cucurbita maxima]	[more]
XP_038879717.1	1.2e-43	90.00	uncharacterized protein LOC120071478 [Benincasa hispida]	[more]
XP_022987917.1	5.0e-42	88.00	uncharacterized protein LOC111485318 [Cucurbita maxima]	[more]

BLAST of Carg12128-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P73300	4.7e-11	81.58	50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B3WAJ5	1.4e-10	81.58	50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ...	[more]
Q035A6	1.4e-10	81.58	50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 170...	[more]
Q88XW3	8.9e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIM...	[more]
A5VLI2	8.9e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 ...	[more]

BLAST of Carg12128-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZS5	1.0e-48	99.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1	[more]
A0A6J1I4R0	1.5e-47	96.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1	[more]
A0A6J1JBN8	2.4e-42	88.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1	[more]
A0A6J1CT08	3.1e-42	87.00	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1	[more]
A0A6J1HBF8	1.6e-41	87.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1	[more]

BLAST of Carg12128-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20180.1	1.7e-27	60.19	Ribosomal protein L36	[more]
AT5G20180.2	1.7e-27	60.19	Ribosomal protein L36	[more]
ATCG00760.1	3.5e-09	68.42	ribosomal protein L36	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000473	Ribosomal protein L36	PFAM	PF00444	Ribosomal_L36	coord: 1..38 e-value: 1.9E-22 score: 79.2
IPR000473	Ribosomal protein L36	TIGRFAM	TIGR01022	TIGR01022	coord: 1..38 e-value: 4.2E-18 score: 63.1
IPR000473	Ribosomal protein L36	PROSITE	PS00828	RIBOSOMAL_L36	coord: 11..37
IPR000473	Ribosomal protein L36	HAMAP	MF_00251	Ribosomal_L36	coord: 1..38 score: 18.701561
None	No IPR available	PANTHER	PTHR18804:SF16	RIBOSOMAL PROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR18804	FAMILY NOT NAMED	coord: 1..99
IPR035977	Ribosomal protein L36 superfamily	SUPERFAMILY	57840	Ribosomal protein L36	coord: 1..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12128	Carg12128	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12128-RA:2	Carg12128-RA:2	exon
Carg12128-RA:1	Carg12128-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12128-RA:three_prime_utr	Carg12128-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12128-RA:cds	Carg12128-RA:cds_2	CDS
Carg12128-RA:cds	Carg12128-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12128-RA:five_prime_utr	Carg12128-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12128-RA	Carg12128-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome