Carg12113-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12113-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 2270720 .. 2274254 (-)
Sequence length410
RNA-Seq ExpressionCarg12113-RA
SyntenyCarg12113-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAACTTGGAAGCGAAGAAAAGCCGACGGTAAGGGGCAAGGCTAAGCCAATGGTGATGGAACGGTGACGTTTCTTGGGTTAAAGGGAGTTGGTCCGTCCGCGGTTAAAAAAAATGTTCAAAGTGTGGGTCCCACCCTCAGACAAGTGGGTGACAAGTGGTTAACAGTGAGTGAATTACTCAACCATTTTTTTTGAAAAAGTAAAAAGTACTTTCCGTCTTAGACTTTATATTGCGGACCATCGTACCTTTCTTAAGACTCGGTTGTCGGGTAGTGGGCTGAAAAAGCTAACAAAAAAGGCCCACTACTCAACCCTGGGCCCTCCAGCCCATTATCACACTTTTGGTGGCGGCCGTCGGCCGCGAAGTCTCCGGCGGGGACCTTTTATTTGCTGCCCAAAAGTCTTTTGTGCCGATGGGAATCCACCATAATCGTGAGTCATCCAACAGGTATGTCTATGTCTGTTCAAATTGGGTTGAATAATTTTTTGGACCAAGTTGAGTTGAGTTAATTGGACTGGTAATTCAATCATCTATTTTCGGGTTTAATGTTTTTTAGAAAAATTTTAAACGACAAAGATTGTTGTTATTGCATATTCAAGAAAGACAACTTTCGACCGGTTGGGTAGATGCTGATGACTAGACTATAGACATATGCGATTGGATTGCTGTTGTAAGTGAATTTGCTTACCTCACAAACCGAAGATATAGTGGGAAGATATGACTTGCGATTTTGCAAAGGGGTGCGATAGTAGGCAACAAGACAACTTTTATATATATATATATATATATTTCAGTTCGGATTGGGACAAATCGACCTTAAGTATACTAAACTTGCACTAGACTCAACCCATTTGTTCCCTATAAAACAAAATCTATCCTTACCTCGTAACCTATCTAATCCAACTCAACACTGATACTTTAGGTTTGGTCGGTTTGAGTTGTCTATTTCATTGTACATCCTTAATTTGTACTTTACTAATATATGTATAAAAAAAAAAAAAAAAAAAAATATATATATATATATACACGTATATTGATAGTCAGACTTTTTTTTAATATTTTTCTATAAAAAGTTAAATTTTCAAAATTTTATGGATAAAAATTATGGTAATAATTTTTTAAAATTTTTTTTATAAAAAAGTTATATTAATATATATATATTTTAAATTTAAAAATATTTTTAAAACACGTGACAATGACCAAATTGAACCGAAGTATATCAATTGTATTCCCCGCCATCTGGCCATTCGGACGCGTTTTGGCGCGAAATTTCGGGTTTTCATTCTTTTCTTCTTCCCATTTCAACTGAGTAATCTTCTTTTATCCACCGTTCTTCACTTCGCAGCAATGTCCGTTATCTGAAACCGTGTCGAAGAAATTAATACGCTGAATTGTTTCTGGAGTTAAAGCAAACAGCCACTTGTCTACTCAACTCATTTACAACTCCAACAGGTTTCTAATACTAATCATACTTCAATCGAGGCCGTAGCGCAATCTTAGACATAGCAATGTAAGGATTACTTCGATTCATACTTTTCATTGGTTGACTGCTTTCTTCGAGTTACTGAGTTGCACTTCTTTTTTCTTCTTATTTAAACTCGGTTCAGCTGTTTATCGAGACTGCGAGTATCATGTAGTTGATTGAACTATAATTTTTGGGCCTATTACTTGCTTGCTTTCAATAGGCTGATTCCCTGGAAGCGTTCCTCTGTTAAGGAATAAGTGAATTGAATGGGTGGTTTATCTTGCGCCTTCCATTATCATTTTAGGGCATCTTCTAAAGTATGAACAAACACTATGAACACATTGCACCGTACTTTGTTCAATATATTGTATCATTAATCATAAAGCAGGTTCACAATATCTCCTCCGCTAGTTTTGTCCAAGGTATTCATTGATCTGTTTCTATTGCTTGTTTTAACTGTTTCTATTGCCTTGAACACAATGGAATTCTTCAGCAATGAAAATAGGATTTTCCCATATGATGCATGCCAAAGGTCATTTAAATCTGTCTTAGAAGAAGTCCAATTAGAGCTAGAAAAAGTGTCTGCTAATTATGATGATGTTATGTATAGTTTGAGGAAAATTTTCTGATTTTTAAGATCTGTCTGAAAGTGTAAGTGCTGATTTGCCTATTCAGCATCATTTGTATTATGCTATCCTTCACTTGATGAAGGCAGTCACCAACCAGTTAGAACCTGCTATATTAGGATCCCTTTGTAACATTCCAAGCACACCGCTAGCAGATATTGTTCGCTTTAGTCCGTTATGTATTGTTGTCAGCTTCACAGTTTTAAAATGCGTTTGTTAGGGAGAGGTTTCTACACCCTTATAAGAAATGCTTCGTTTCTTTTTCCAACTGGTATAGGATCTCACAATTTTGTAATAATCCAAGCTCACTGCTAGCAAATATTGTCCGTTTTGGCCCGTTACGTATCGCCGTAAGCCTTATGGTTTTAAAATGCATCTACTAGAGAGAGGTTAAACACCCTTATAAGAAATGTTTTTTTCCATTCTCCAACCGACGTTGCATCCCACGCTTATCATATTTAATTGGACTTCAAGGAAATAGACAGAGTCCAATCAGTCGATCACATTAGCTATGCACAAGTTCTTGGTAATATCTCACATGGATAAGGTATCACCTATCTTTTATTCAGTTGTAATGTACGCTTTAGTTGCAGTACGGTTTTCTTTGACAATATGTTTTGACAGATTGCATCCTAAAGGAAATGCACGAACATTTTGAAATTGGATTTTCTTCATTTATACCTCCAGATAATCTTCTTGCAGCTATTGAATTCTGTATAAAAACAGTGTTCAAATAGGCTAGAGATATGGATTGCAATAGCAAAGGGTTTGATGGAGAGCAGGAATTTTTTCCCGTTGAAAACCAAGTCAGAGACGGCAGGGGTGAATGGCATATGCCATCTCCTCTCCTAATCCTTTTGTTGTATGCTCTTTTAAAAACTTGTGTGGCTGTCCAAGTTTGGACGCCGTTTTATACTTCTGTGAACACATTGCAGCTTGAGGATTCCTTGAGTATCAGTTTCACCGAGGATTTGGCTTCTTTGTTAAGCAGATGCCTCAATCAAAACTTCAAAAGAGAGAGTTTGTAATAGCCAAATCTACCGCCAGCAGAAATTGTCTGCTCACAGTTTTAAAATGCGTCTGTTAAGGATAGGTTTTCGTACTCCTATAAAGAGTGTTTGTTTGCCTGTCAAACCGACTTGAGATCGCACAGTAATGGGCTTGAACTGTTGTATGGTTGCAGCTTGTTGGCTGTTGAACAATGCCCTGCAATAAAAGGAGGTGCCGATCCTCCTTTTTGTCATAGGGTGAGTGCAACGTCCATCTGGAGTAAGAAAGATGAGCTCAACAAGAACGAGCACAGGACTAGAGTGGGCATGGCCCGGGCATTCGAACCAACACAAGCCTTGATCATTGACAAGTAGGTAATGATTCAGAGGAGAGACAGGGCACCCAAACTCCTAAAGGCCAAATCTAATGGCAAAAGCACACACAAACC

mRNA sequence

ATGGTTGAACTTGGAAGCGAAGAAAAGCCGACGCCCATTATCACACTTTTGGTGGCGGCCGTCGGCCGCGAAGTCTCCGGCGGGGACCTTTTATTTGCTGCCCAAAAGTCTTTTGTGCCGATGGGAATCCACCATAATCGTGAGTCATCCAACAGCTTGTTGGCTGTTGAACAATGCCCTGCAATAAAAGGAGGTGCCGATCCTCCTTTTTGTCATAGGGTGAGTGCAACGTCCATCTGGAGTAAGAAAGATGAGCTCAACAAGAACGAGCACAGGACTAGAGTGGGCATGGCCCGGGCATTCGAACCAACACAAGCCTTGATCATTGACAAGTAGGTAATGATTCAGAGGAGAGACAGGGCACCCAAACTCCTAAAGGCCAAATCTAATGGCAAAAGCACACACAAACC

Coding sequence (CDS)

ATGGTTGAACTTGGAAGCGAAGAAAAGCCGACGCCCATTATCACACTTTTGGTGGCGGCCGTCGGCCGCGAAGTCTCCGGCGGGGACCTTTTATTTGCTGCCCAAAAGTCTTTTGTGCCGATGGGAATCCACCATAATCGTGAGTCATCCAACAGCTTGTTGGCTGTTGAACAATGCCCTGCAATAAAAGGAGGTGCCGATCCTCCTTTTTGTCATAGGGTGAGTGCAACGTCCATCTGGAGTAAGAAAGATGAGCTCAACAAGAACGAGCACAGGACTAGAGTGGGCATGGCCCGGGCATTCGAACCAACACAAGCCTTGATCATTGACAAGTAG

Protein sequence

MVELGSEEKPTPIITLLVAAVGREVSGGDLLFAAQKSFVPMGIHHNRESSNSLLAVEQCPAIKGGADPPFCHRVSATSIWSKKDELNKNEHRTRVGMARAFEPTQALIIDK
Homology
[Close]
BLAST of Carg12113-RA vs. NCBI nr
Match: KAG7021768.1 (hypothetical protein SDJN02_15495, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.6 bits (579), Expect = 5.1e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVELGSEEKPTPIITLLVAAVGREVSGGDLLFAAQKSFVPMGIHHNRESSNSLLAVEQCP 60
           MVELGSEEKPTPIITLLVAAVGREVSGGDLLFAAQKSFVPMGIHHNRESSNSLLAVEQCP
Sbjct: 1   MVELGSEEKPTPIITLLVAAVGREVSGGDLLFAAQKSFVPMGIHHNRESSNSLLAVEQCP 60

Query: 61  AIKGGADPPFCHRVSATSIWSKKDELNKNEHRTRVGMARAFEPTQALIIDK 112
           AIKGGADPPFCHRVSATSIWSKKDELNKNEHRTRVGMARAFEPTQALIIDK
Sbjct: 61  AIKGGADPPFCHRVSATSIWSKKDELNKNEHRTRVGMARAFEPTQALIIDK 111

The following BLAST results are available for this feature:
BLAST of Carg12113-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021768.15.1e-56100.00hypothetical protein SDJN02_15495, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg12113-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12113-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12113-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg12113Carg12113gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12113-RA:1Carg12113-RA:1exon
Carg12113-RA:2Carg12113-RA:2exon
Carg12113-RA:3Carg12113-RA:3exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12113-RA:three_prime_utrCarg12113-RA:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12113-RA:cdsCarg12113-RA:cds_3CDS
Carg12113-RA:cdsCarg12113-RA:cds_2CDS
Carg12113-RA:cdsCarg12113-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg12113-RACarg12113-RA-proteinpolypeptide