Carg11598-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11598-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	MADS-box transcription factor 8-like
Location	Carg_Chr17: 9913236 .. 9913716 (+)
Sequence length	216
RNA-Seq Expression	Carg11598-RA
Synteny	Carg11598-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGTTCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGGTACGCTTTTGATCTTCGTTGTTTTTCTTGTTTTTCTCCGATTGTGTTTGTTCATATCGATTATGGTAGTGCAAGCTGTTGCTGAATGCCTTTTGAACGAACTTGAACTATTTCCTTTTGTTTTCTTTATGCTTGCTATTTGAAGTGATTTATGCCATCGGAAAATCTGTGATAGTCTTAGCGCGTTTTCTTCGTGAACTCTGCTTTCTGTCGTATCGACGAAGAAAATGCAATTCTTCGTTTTTTTGTTTGATTTTTCTGAAAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG

mRNA sequence

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGTTCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG

Coding sequence (CDS)

ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGGTGTAATCGCCATGTGACTTTCTGCAAGAGAAGAGCTGGATTGATAAAGAAGGCCCGAGAGCTCTCTGTTCTGTGCGACGTTGAAGTCGGACTTGTCATCTTCACCAACCGCGGCCGCCTCTATGAGTTTTGCAGCGGAAACAGAGAACCTCTTAGGAAAATCGATGGGGTTTAG

Protein sequence

MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSGNREPLRKIDGV

Homology

[Close]

BLAST of Carg11598-RA vs. NCBI nr
Match: KAG7014654.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 NREPLRKIDGV 72
          NREPLRKIDGV
Sbjct: 61 NREPLRKIDGV 71

[Close]

BLAST of Carg11598-RA vs. NCBI nr
Match: KAG6576135.1 (Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 7.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 NR 63
          NR
Sbjct: 61 NR 62

[Close]

BLAST of Carg11598-RA vs. NCBI nr
Match: XP_023514717.1 (MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Carg11598-RA vs. NCBI nr
Match: KAG6592961.1 (Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025372.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIE+KRIED CNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60

Query: 61 NR 63
          +R
Sbjct: 61 DR 62

[Close]

BLAST of Carg11598-RA vs. NCBI nr
Match: XP_008459847.1 (PREDICTED: MADS-box transcription factor 8-like [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIEVK IEDRCNRHVTFCKRR+GL+KKARELSVLCDVEVG+++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Carg11598-RA vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-19
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE++ NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61 NREPLRKID 70
               R +D
Sbjct: 61 PSGMARTVD 69

[Close]

BLAST of Carg11598-RA vs. ExPASy Swiss-Prot
Match: Q9SAR1 (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS8 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE++ NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCSG
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

[Close]

BLAST of Carg11598-RA vs. ExPASy Swiss-Prot
Match: Q03489 (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-18
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE++ NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Carg11598-RA vs. ExPASy Swiss-Prot
Match: O04067 (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-18
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE++ NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Carg11598-RA vs. ExPASy Swiss-Prot
Match: Q8LLR0 (Agamous-like MADS-box protein MADS4 OS=Vitis vinifera OX=29760 GN=MADS4 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-18
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE++ NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Carg11598-RA vs. ExPASy TrEMBL
Match: A0A6J1KPU7 (MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIE+KRIED CNRHVTFCKRR+GLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60

Query: 61 N 62
          +
Sbjct: 61 D 61

[Close]

BLAST of Carg11598-RA vs. ExPASy TrEMBL
Match: A0A1S3CCC5 (MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIEVK IEDRCNRHVTFCKRR+GL+KKARELSVLCDVEVG+++FTNRGRLYEFCSG
Sbjct: 1  MGRKKIEVKLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCSG 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of Carg11598-RA vs. ExPASy TrEMBL
Match: A0A6J1H7I9 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111460798 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGRKKIE+KRIED CNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG
Sbjct: 1  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG 60

Query: 61 N 62
          +
Sbjct: 61 D 61

[Close]

BLAST of Carg11598-RA vs. ExPASy TrEMBL
Match: A0A6J1DME3 (MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
           MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of Carg11598-RA vs. ExPASy TrEMBL
Match: A0A6J1DPA0 (MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022564 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
           MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFC G
Sbjct: 40  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCRG 99

Query: 61  N 62
           N
Sbjct: 100 N 100

[Close]

BLAST of Carg11598-RA vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-20
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE++ NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61 NREPLRKID 70
               R +D
Sbjct: 61 PSGMARTVD 69

[Close]

BLAST of Carg11598-RA vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-20
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE++ NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61 NREPLRKID 70
               R +D
Sbjct: 61 PSGMARTVD 69

[Close]

BLAST of Carg11598-RA vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-20
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR K+E+KRIE++ NR VTF KRR GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61 NREPLRKID 70
               R +D
Sbjct: 61 PSGMARTVD 69

[Close]

BLAST of Carg11598-RA vs. TAIR 10
Match: AT1G24260.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE++ NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

[Close]

BLAST of Carg11598-RA vs. TAIR 10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MGRKKIEVKRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCSG 60
          MGR ++E+KRIE++ NR VTF KRR GL+KKA ELSVLCD EV L+IF+NRG+LYEFCS 
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 N 62
          +
Sbjct: 61 S 61

The following BLAST results are available for this feature:

BLAST of Carg11598-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014654.1	1.5e-32	100.00	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6576135.1	7.1e-27	100.00	Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023514717.1	2.7e-26	100.00	MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6592961.1	8.7e-25	91.94	Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_008459847.1	2.5e-24	90.16	PREDICTED: MADS-box transcription factor 8-like [Cucumis melo]	[more]

BLAST of Carg11598-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29383	3.3e-19	63.77	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
Q9SAR1	5.7e-19	71.67	MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]
Q03489	2.2e-18	68.85	Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE...	[more]
O04067	2.2e-18	68.85	Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 ...	[more]
Q8LLR0	2.2e-18	68.85	Agamous-like MADS-box protein MADS4 OS=Vitis vinifera OX=29760 GN=MADS4 PE=2 SV=...	[more]

BLAST of Carg11598-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPU7	1.2e-24	93.44	MADS-box protein 04g005320-like OS=Cucurbita maxima OX=3661 GN=LOC111497621 PE=4...	[more]
A0A1S3CCC5	1.2e-24	90.16	MADS-box transcription factor 8-like OS=Cucumis melo OX=3656 GN=LOC103498847 PE=...	[more]
A0A6J1H7I9	1.6e-24	91.80	truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1DME3	2.7e-24	91.80	MADS-box protein FLOWERING LOCUS C-like isoform X1 OS=Momordica charantia OX=367...	[more]
A0A6J1DPA0	2.7e-24	91.80	MADS-box transcription factor 8-like isoform X3 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg11598-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03710.1	2.4e-20	63.77	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.2	2.4e-20	63.77	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	2.4e-20	63.77	K-box region and MADS-box transcription factor family protein	[more]
AT1G24260.1	1.5e-19	68.85	K-box region and MADS-box transcription factor family protein	[more]
AT1G24260.2	1.5e-19	68.85	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 52.53 coord: 3..23 score: 57.65 coord: 23..38 score: 76.72
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 9.9E-33 score: 124.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 3.1E-24 score: 84.3
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 30.164972
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..69 e-value: 2.3E-23 score: 83.7
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..63
None	No IPR available	PANTHER	PTHR48019:SF72	MADS-BOX TRANSCRIPTION FACTOR 6	coord: 1..61
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11598	Carg11598	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11598-RA:1	Carg11598-RA:1	exon
Carg11598-RA:2	Carg11598-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11598-RA:cds	Carg11598-RA:cds	CDS
Carg11598-RA:cds	Carg11598-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11598-RA	Carg11598-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding