Carg10907-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10907-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ethylene-responsive transcription factor WIN1-like
Location	Carg_Chr05: 11426074 .. 11427681 (+)
Sequence length	675
RNA-Seq Expression	Carg10907-RA
Synteny	Carg10907-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCATCGAAGAAGTTTAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTATCCGAAATTCGCCACCCTCTCCTGTAAGTTTCGGAACCCACCATTGAAAACCTCTCTCTCGTCTTGAATCTAAAAGATTAAGAACATGGATCATGATATTCTTTGCCTCGGTCTCTCTATCGTTGAATCTTAAAGTTTAAGTAGATGGGTCATGTTATTATTTACCTCAGTGTCCCTCGTTGAATCTTATTATTGTTTACTTCAGTCTCTCTCGTTGAATCTAAAAGTTTAAGCAGATGGGTCATGATATTGTTTATCTCGGCCTCTCTCGTTGAATCTAAAATTTTAAGTAGATGATCATGATATTATTTACCTCCGACTCTCGTTGAATCTAAAAGTTTAAGAAAATGGGTCATGATATTGTTTACCTCAATCTCTCTAGTTGAATCTTAAAGTTTAAGCATATGAGTCATGATATTGTTTACTCGGCTCTCTCTCATTGAATCTTAAAGTTTAAGCAAACGGGTCATCATATTATTAACCTCGATCACTCAAGTAACGAAATATTTAAATGTTACGTTGATACTCATTAGGGTTTCTAAAACGTTTCTACTTTTTTTCGATATTAATGTTTCACATTTTTATGAATTCTGAGTTAAATTTCAAAATTAAATGGATAGGTTAAATAATGAAAATTTAAAAGTAATGGTTCAAAATCCCCGAGTAGGGTTTTTGTGTTCGGGTTTGCATTGTGAGGTCTAGTACACGTCCCTACCGGGTTTTTTTTTTTTACCTCATTTTAGCCTTGTAATGAGTATAGTAAGAGATCAAATCGAGAAAGGAGCTTCCCTCAAGATTGTACTAAGACTAAAATGTGAACAAAAAGATGTAGTTATGTGTACGAGACCTTGCCACTCAAACCCGAATGCAAATAAAATTTGAAAATTTGAACTTTCAACCTTTCGATCGATATGTTAATTACCGTTGAGTTATGTTTAAGTTAATTATAATTACAGGAAGAGAAGGGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCCTACGATCAGGCCGCCGTGTTAATGAGCGGTCGAAACGCAAAAACCAACTTTCCGATGAGCGAAACGGCAGCGCCAGAATTAGAAAAGCTCAACAACATCACTACTCCATCTTCAACAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCATCGCCATCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGCCAACGCTCTGACTCAAGCTGGGTCATGACCGTTCATCTCGGAAAAGAAAACTCCTCCTCCTCCTCCATCGCCGCCGCTTCCGGCGGCAATGACGACGGTGGGCGGTTGTGGAATGGTAAAAAAAGTGGTGGCGCTTCAATGGCGGGCGGTGGACCCCACATGAGAAATTTGCAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTCAAGTTCAAGATCATCACGAGGAAGCAAAGCTAAGCCCTTTCTAA

mRNA sequence

ATGGCGCCATCGAAGAAGTTTAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTATCCGAAATTCGCCACCCTCTCCTGAAGAGAAGGGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCCTACGATCAGGCCGCCGTGTTAATGAGCGGTCGAAACGCAAAAACCAACTTTCCGATGAGCGAAACGGCAGCGCCAGAATTAGAAAAGCTCAACAACATCACTACTCCATCTTCAACAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCATCGCCATCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGCCAACGCTCTGACTCAAGCTGGGTCATGACCGTTCATCTCGGAAAAGAAAACTCCTCCTCCTCCTCCATCGCCGCCGCTTCCGGCGGCAATGACGACGGTGGGCGGTTGTGGAATGGTAAAAAAAGTGGTGGCGCTTCAATGGCGGGCGGTGGACCCCACATGAGAAATTTGCAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTCAAGTTCAAGATCATCACGAGGAAGCAAAGCTAAGCCCTTTCTAA

Coding sequence (CDS)

ATGGCGCCATCGAAGAAGTTTAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTATCCGAAATTCGCCACCCTCTCCTGAAGAGAAGGGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCCTACGATCAGGCCGCCGTGTTAATGAGCGGTCGAAACGCAAAAACCAACTTTCCGATGAGCGAAACGGCAGCGCCAGAATTAGAAAAGCTCAACAACATCACTACTCCATCTTCAACAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCATCGCCATCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGCCAACGCTCTGACTCAAGCTGGGTCATGACCGTTCATCTCGGAAAAGAAAACTCCTCCTCCTCCTCCATCGCCGCCGCTTCCGGCGGCAATGACGACGGTGGGCGGTTGTGGAATGGTAAAAAAAGTGGTGGCGCTTCAATGGCGGGCGGTGGACCCCACATGAGAAATTTGCAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTCAAGTTCAAGATCATCACGAGGAAGCAAAGCTAAGCCCTTTCTAA

Protein sequence

MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF

Homology

[Close]

BLAST of Carg10907-RA vs. NCBI nr
Match: KAG6599400.1 (Ethylene-responsive transcription factor WIN1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030385.1 Ethylene-responsive transcription factor WIN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 445.7 bits (1145), Expect = 2.4e-121
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV
Sbjct: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM
Sbjct: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180

Query: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 225
           RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF
Sbjct: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 224

[Close]

BLAST of Carg10907-RA vs. NCBI nr
Match: XP_022946212.1 (ethylene-responsive transcription factor WIN1-like [Cucurbita moschata])

HSP 1 Score: 443.7 bits (1140), Expect = 9.2e-121
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV
Sbjct: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAGQRSDSSWVMTVHLGKENSSSSS AAASGGNDDGGRLWNGKKSGGASMAGGGPHM
Sbjct: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSTAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180

Query: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 225
           RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF
Sbjct: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 224

[Close]

BLAST of Carg10907-RA vs. NCBI nr
Match: XP_023522237.1 (ethylene-responsive transcription factor WIN1-like [Cucurbita pepo subsp. pepo] >XP_023546818.1 ethylene-responsive transcription factor WIN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.3 bits (1118), Expect = 3.3e-118
Identity = 222/229 (96.94%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV
Sbjct: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120

Query: 121 WQKRAGQRSDSSWVMTVHLGKEN-----SSSSSIAAASGGNDDGGRLWNGKKSGGASMAG 180
           WQKRAGQRSDSSWVMTVHLGKEN     SSSSS AAASGGNDDGGRLWN KKSGGASMAG
Sbjct: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSSSSSSTAAASGGNDDGGRLWNSKKSGGASMAG 180

Query: 181 GGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 225
           GGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF
Sbjct: 181 GGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 229

[Close]

BLAST of Carg10907-RA vs. NCBI nr
Match: XP_022999174.1 (ethylene-responsive transcription factor WIN1-like [Cucurbita maxima])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 219/224 (97.77%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 39  MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 98

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV
Sbjct: 99  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 158

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAGQRSDSSWVMTVHLGKENSSSS+ AAA GGNDDGGRLWN KKSGGASMAGGGPHM
Sbjct: 159 WQKRAGQRSDSSWVMTVHLGKENSSSST-AAAYGGNDDGGRLWNSKKSGGASMAGGGPHM 218

Query: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 225
           RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDH EEAKLSPF
Sbjct: 219 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHQEEAKLSPF 261

[Close]

BLAST of Carg10907-RA vs. NCBI nr
Match: TYJ97818.1 (ethylene-responsive transcription factor WIN1-like [Cucumis melo var. makuwa])

HSP 1 Score: 334.7 bits (857), Expect = 6.0e-88
Identity = 182/233 (78.11%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M PSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEK-----LNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTEN 120
           NFPMS+T   E EK     +NNI +PSS KGLSEILHAKLRKCSK PSPSMTCLRLDTEN
Sbjct: 61  NFPMSQTTVSEFEKPDNNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTEN 120

Query: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGND---DGGRLWNGKKSGGAS 180
           SHIGVWQKRAGQRSDSSWVMTVHLGK NSSSSS +  +GG +   DGGR+   K+SG  S
Sbjct: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTAGGGEDGADGGRVKRNKRSGSFS 180

Query: 181 --------MAGGGPHMRNLQM-DEEERIALQMIEELLSRNYGNPSE-IQVQDH 216
                     GG  HMR L+M DEEERIALQMIEELLSRNYGNPSE IQ+QDH
Sbjct: 181 GLMSSSEGSGGGSCHMRKLEMDDEEERIALQMIEELLSRNYGNPSEIIQLQDH 233

[Close]

BLAST of Carg10907-RA vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.3e-58
Identity = 124/210 (59.05%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M  +KKFRGVRQRHWGSWV+EIRHPLLKRR+WLGTFETAEEAARAYD+AAVLMSGRNAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPE-------LEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDT 120
           NFP++     E       +   + +++ +S+  LS IL AKLRKC K+PSPS+TCLRLDT
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 ENSHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASM 180
            +SHIGVWQKRAG +SDSSWVMTV LG  +SS  + + AS          +   +    +
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKAS---------QDAILAPTTEV 180

Query: 181 AGGGPHMRNLQMDEEERIALQMIEELLSRN 204
             GG   R   +DEEE++ALQMIEELL+ N
Sbjct: 181 EIGG--SREEVLDEEEKVALQMIEELLNTN 199

[Close]

BLAST of Carg10907-RA vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-47
Identity = 105/201 (52.24%), Postives = 137/201 (68.16%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M  SKKFRGVRQR WGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAAVLM+G++AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFP+ ++      ++N+     S K LSE+L+AKLRK  K  +P +TCLRLD ++SHIGV
Sbjct: 61  NFPVIKSNGSNSLEINSAL--RSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGV 120

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAG ++  +WV  V LG        + A  GG+ +  ++                 +
Sbjct: 121 WQKRAGSKTSPNWVKLVELG------DKVNARPGGDIETNKM----------------KV 177

Query: 181 RNLQMDEEERIALQMIEELLS 202
           RN  + E++++A+QMIEELL+
Sbjct: 181 RNEDVQEDDQMAMQMIEELLN 177

[Close]

BLAST of Carg10907-RA vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.5e-46
Identity = 108/203 (53.20%), Postives = 140/203 (68.97%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M  S+KFRGVRQR WGSWVSEIRHPLLKRRVWLGTFETAE AARAYDQAA+LM+G+NAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPM--SETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHI 120
           NFP+  SE  +  ++ +N  +   S K LSE+L+AKLRK  K  +PS+TCLRLDT++SHI
Sbjct: 61  NFPVVKSEEGSDHVKDVN--SPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHI 120

Query: 121 GVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGP 180
           GVWQKRAG ++  +WVM + LG   + S+     +  N       N +K      A    
Sbjct: 121 GVWQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQ-----NVEKEEEEEEA---- 180

Query: 181 HMRNLQMDEEERIALQMIEELLS 202
                 + +E+++A++MIEELL+
Sbjct: 181 -----IISDEDQLAMEMIEELLN 187

[Close]

BLAST of Carg10907-RA vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-26
Identity = 63/99 (63.64%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 3   PSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNF 62
           P ++FRGVRQRHWGSWVSEIRHPLLK R+WLGTFETAE+AARAYD+AA LM G  A+TNF
Sbjct: 4   PQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNF 63

Query: 63  PMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKA 102
           P +  A P           SS+K LS  L AKL KC  A
Sbjct: 64  PYNPNAIP----------TSSSKLLSATLTAKLHKCYMA 92

[Close]

BLAST of Carg10907-RA vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-22
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 3   PSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNF 62
           P +++RG RQRHWGSWVSEIRH +LK R+W GTFE+AE+AARAYD+AA LM G  A+TNF
Sbjct: 4   PQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNF 63

Query: 63  PMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKA 102
           P +           N +  SS+K LS  L AKL +C  A
Sbjct: 64  PYNP----------NASQSSSSKLLSATLIAKLHRCYMA 92

[Close]

BLAST of Carg10907-RA vs. ExPASy TrEMBL
Match: A0A6J1G348 (ethylene-responsive transcription factor WIN1-like OS=Cucurbita moschata OX=3662 GN=LOC111450365 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 4.5e-121
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV
Sbjct: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAGQRSDSSWVMTVHLGKENSSSSS AAASGGNDDGGRLWNGKKSGGASMAGGGPHM
Sbjct: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSTAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180

Query: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 225
           RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF
Sbjct: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 224

[Close]

BLAST of Carg10907-RA vs. ExPASy TrEMBL
Match: A0A6J1KGA9 (ethylene-responsive transcription factor WIN1-like OS=Cucurbita maxima OX=3661 GN=LOC111493635 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.1e-117
Identity = 219/224 (97.77%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 39  MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 98

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV
Sbjct: 99  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 158

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAGQRSDSSWVMTVHLGKENSSSS+ AAA GGNDDGGRLWN KKSGGASMAGGGPHM
Sbjct: 159 WQKRAGQRSDSSWVMTVHLGKENSSSST-AAAYGGNDDGGRLWNSKKSGGASMAGGGPHM 218

Query: 181 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF 225
           RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDH EEAKLSPF
Sbjct: 219 RNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHQEEAKLSPF 261

[Close]

BLAST of Carg10907-RA vs. ExPASy TrEMBL
Match: A0A5D3BHZ7 (Ethylene-responsive transcription factor WIN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00280 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.9e-88
Identity = 182/233 (78.11%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M PSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEK-----LNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTEN 120
           NFPMS+T   E EK     +NNI +PSS KGLSEILHAKLRKCSK PSPSMTCLRLDTEN
Sbjct: 61  NFPMSQTTVSEFEKPDNNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTEN 120

Query: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGND---DGGRLWNGKKSGGAS 180
           SHIGVWQKRAGQRSDSSWVMTVHLGK NSSSSS +  +GG +   DGGR+   K+SG  S
Sbjct: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTAGGGEDGADGGRVKRNKRSGSFS 180

Query: 181 --------MAGGGPHMRNLQM-DEEERIALQMIEELLSRNYGNPSE-IQVQDH 216
                     GG  HMR L+M DEEERIALQMIEELLSRNYGNPSE IQ+QDH
Sbjct: 181 GLMSSSEGSGGGSCHMRKLEMDDEEERIALQMIEELLSRNYGNPSEIIQLQDH 233

[Close]

BLAST of Carg10907-RA vs. ExPASy TrEMBL
Match: A0A5A7V215 (Ethylene-responsive transcription factor WIN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001730 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.5e-88
Identity = 181/233 (77.68%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M PSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEK-----LNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTEN 120
           NFPMS+T   E EK     +NNI +PSS KGLSEILHAKLRKCSK PSPSMTCLRLDTEN
Sbjct: 61  NFPMSQTTVSEFEKPDNNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTEN 120

Query: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGND---DGGRLWNGKKSGGAS 180
           SHIGVWQKRAGQRSDSSWVMTVHLGK NSSSSS +  +GG +   DGGR+   K+SG  S
Sbjct: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTAGGGEDGADGGRVKRNKRSGSFS 180

Query: 181 --------MAGGGPHMRNLQM-DEEERIALQMIEELLSRNYGNPSE-IQVQDH 216
                     GG  HMR L+M DEEERIALQMIEELL+RNYGNPSE IQ+QDH
Sbjct: 181 GLMSSSEGSGGGSCHMRKLEMDDEEERIALQMIEELLNRNYGNPSEIIQLQDH 233

[Close]

BLAST of Carg10907-RA vs. ExPASy TrEMBL
Match: A0A1S3C6G2 (ethylene-responsive transcription factor WIN1-like OS=Cucumis melo OX=3656 GN=LOC103497212 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.5e-88
Identity = 181/233 (77.68%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M PSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT
Sbjct: 1   MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPELEK-----LNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTEN 120
           NFPMS+T   E EK     +NNI +PSS KGLSEILHAKLRKCSK PSPSMTCLRLDTEN
Sbjct: 61  NFPMSQTTVSEFEKPDNNMINNIISPSSPKGLSEILHAKLRKCSKVPSPSMTCLRLDTEN 120

Query: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGND---DGGRLWNGKKSGGAS 180
           SHIGVWQKRAGQRSDSSWVMTVHLGK NSSSSS +  +GG +   DGGR+   K+SG  S
Sbjct: 121 SHIGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTAGGGEDGADGGRVKRNKRSGSFS 180

Query: 181 --------MAGGGPHMRNLQM-DEEERIALQMIEELLSRNYGNPSE-IQVQDH 216
                     GG  HMR L+M DEEERIALQMIEELL+RNYGNPSE IQ+QDH
Sbjct: 181 GLMSSSEGSGGGSCHMRKLEMDDEEERIALQMIEELLNRNYGNPSEIIQLQDH 233

[Close]

BLAST of Carg10907-RA vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.6e-59
Identity = 124/210 (59.05%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M  +KKFRGVRQRHWGSWV+EIRHPLLKRR+WLGTFETAEEAARAYD+AAVLMSGRNAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPMSETAAPE-------LEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDT 120
           NFP++     E       +   + +++ +S+  LS IL AKLRKC K+PSPS+TCLRLDT
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 ENSHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASM 180
            +SHIGVWQKRAG +SDSSWVMTV LG  +SS  + + AS          +   +    +
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKAS---------QDAILAPTTEV 180

Query: 181 AGGGPHMRNLQMDEEERIALQMIEELLSRN 204
             GG   R   +DEEE++ALQMIEELL+ N
Sbjct: 181 EIGG--SREEVLDEEEKVALQMIEELLNTN 199

[Close]

BLAST of Carg10907-RA vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-48
Identity = 105/201 (52.24%), Postives = 137/201 (68.16%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M  SKKFRGVRQR WGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAAVLM+G++AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFP+ ++      ++N+     S K LSE+L+AKLRK  K  +P +TCLRLD ++SHIGV
Sbjct: 61  NFPVIKSNGSNSLEINSAL--RSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGV 120

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAG ++  +WV  V LG        + A  GG+ +  ++                 +
Sbjct: 121 WQKRAGSKTSPNWVKLVELG------DKVNARPGGDIETNKM----------------KV 177

Query: 181 RNLQMDEEERIALQMIEELLS 202
           RN  + E++++A+QMIEELL+
Sbjct: 181 RNEDVQEDDQMAMQMIEELLN 177

[Close]

BLAST of Carg10907-RA vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 108/203 (53.20%), Postives = 140/203 (68.97%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M  S+KFRGVRQR WGSWVSEIRHPLLKRRVWLGTFETAE AARAYDQAA+LM+G+NAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPM--SETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHI 120
           NFP+  SE  +  ++ +N  +   S K LSE+L+AKLRK  K  +PS+TCLRLDT++SHI
Sbjct: 61  NFPVVKSEEGSDHVKDVN--SPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHI 120

Query: 121 GVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGP 180
           GVWQKRAG ++  +WVM + LG   + S+     +  N       N +K      A    
Sbjct: 121 GVWQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQ-----NVEKEEEEEEA---- 180

Query: 181 HMRNLQMDEEERIALQMIEELLS 202
                 + +E+++A++MIEELL+
Sbjct: 181 -----IISDEDQLAMEMIEELLN 187

[Close]

BLAST of Carg10907-RA vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-45
Identity = 102/201 (50.75%), Postives = 134/201 (66.67%), Query Frame = 0


Query: 1   MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKT 60
           M  SKKFRGVRQR WGSWVSEIRHPLL   VWLGTF+TAE AARAYDQAAVLM+G++AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGV 120
           NFP+ ++      ++N+     S K LSE+L+AKLRK  K  +P +TCLRLD ++SHIGV
Sbjct: 61  NFPVIKSNGSNSLEINSAL--RSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGV 120

Query: 121 WQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHM 180
           WQKRAG ++  +WV  V LG        + A  GG+ +  ++                 +
Sbjct: 121 WQKRAGSKTSPNWVKLVELG------DKVNARPGGDIETNKM----------------KV 174

Query: 181 RNLQMDEEERIALQMIEELLS 202
           RN  + E++++A+QMIEELL+
Sbjct: 181 RNEDVQEDDQMAMQMIEELLN 174

[Close]

BLAST of Carg10907-RA vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 9.8e-28
Identity = 63/99 (63.64%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 3   PSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNF 62
           P ++FRGVRQRHWGSWVSEIRHPLLK R+WLGTFETAE+AARAYD+AA LM G  A+TNF
Sbjct: 4   PQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNF 63

Query: 63  PMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKA 102
           P +  A P           SS+K LS  L AKL KC  A
Sbjct: 64  PYNPNAIP----------TSSSKLLSATLTAKLHKCYMA 92

The following BLAST results are available for this feature:

BLAST of Carg10907-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599400.1	2.4e-121	100.00	Ethylene-responsive transcription factor WIN1, partial [Cucurbita argyrosperma s...	[more]
XP_022946212.1	9.2e-121	99.55	ethylene-responsive transcription factor WIN1-like [Cucurbita moschata]	[more]
XP_023522237.1	3.3e-118	96.94	ethylene-responsive transcription factor WIN1-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022999174.1	1.1e-116	97.77	ethylene-responsive transcription factor WIN1-like [Cucurbita maxima]	[more]
TYJ97818.1	6.0e-88	78.11	ethylene-responsive transcription factor WIN1-like [Cucumis melo var. makuwa]	[more]

BLAST of Carg10907-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI33	2.3e-58	59.05	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q3E958	1.8e-47	52.24	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LFN7	4.5e-46	53.20	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q94AW5	1.4e-26	63.64	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	2.1e-22	55.56	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]

BLAST of Carg10907-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G348	4.5e-121	99.55	ethylene-responsive transcription factor WIN1-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KGA9	5.1e-117	97.77	ethylene-responsive transcription factor WIN1-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5D3BHZ7	2.9e-88	78.11	Ethylene-responsive transcription factor WIN1-like OS=Cucumis melo var. makuwa O...	[more]
A0A5A7V215	6.5e-88	77.68	Ethylene-responsive transcription factor WIN1-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3C6G2	6.5e-88	77.68	ethylene-responsive transcription factor WIN1-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Carg10907-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15360.1	1.6e-59	59.05	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	1.3e-48	52.24	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	3.2e-47	53.20	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	3.0e-45	50.75	Integrase-type DNA-binding superfamily protein	[more]
AT5G25190.1	9.8e-28	63.64	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 7..18 score: 61.21 coord: 29..45 score: 73.48
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 6..69 e-value: 1.9E-38 score: 143.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 6..50 e-value: 3.0E-12 score: 46.6
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 6..63 score: 21.86483
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 5..65 e-value: 2.60802E-33 score: 112.75
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 5..65 e-value: 1.8E-26 score: 94.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..178
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..209
None	No IPR available	PANTHER	PTHR31194:SF49	AP2-EREBP TRANSCRIPTION FACTOR	coord: 1..209
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 6..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10907	Carg10907	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10907-RA:2	Carg10907-RA:2	exon
Carg10907-RA:1	Carg10907-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10907-RA:cds	Carg10907-RA:cds	CDS
Carg10907-RA:cds	Carg10907-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10907-RA	Carg10907-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity