Carg10279-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10279-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit C
Location	Carg_Chr10: 201929 .. 202591 (+)
Sequence length	663
RNA-Seq Expression	Carg10279-RA
Synteny	Carg10279-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

mRNA sequence

ATGGAGAGTAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

Coding sequence (CDS)

ATGGAGAGTAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

Protein sequence

MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR

Homology

[Close]

BLAST of Carg10279-RA vs. NCBI nr
Match: KAG7023061.1 (Nuclear transcription factor Y subunit C-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 435.6 bits (1119), Expect = 2.5e-118
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR 221
           TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR 220

[Close]

BLAST of Carg10279-RA vs. NCBI nr
Match: XP_022987443.1 (nuclear transcription factor Y subunit C-1 [Cucurbita maxima] >XP_023516854.1 nuclear transcription factor Y subunit C-1 [Cucurbita pepo subsp. pepo] >KAG6589382.1 Nuclear transcription factor Y subunit C-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433.7 bits (1114), Expect = 9.4e-118
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Carg10279-RA vs. NCBI nr
Match: XP_022921750.1 (nuclear transcription factor Y subunit C-1-like [Cucurbita moschata])

HSP 1 Score: 432.6 bits (1111), Expect = 2.1e-117
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGG+MIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGLMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Carg10279-RA vs. NCBI nr
Match: XP_022134838.1 (nuclear transcription factor Y subunit C-1-like [Momordica charantia])

HSP 1 Score: 426.0 bits (1094), Expect = 2.0e-115
Identity = 216/219 (98.63%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSPYPPPQAPVPAPP HHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Carg10279-RA vs. NCBI nr
Match: KAA0057769.1 (nuclear transcription factor Y subunit C-1 [Cucumis melo var. makuwa] >TYJ98450.1 nuclear transcription factor Y subunit C-1 [Cucumis melo var. makuwa])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 214/220 (97.27%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           M++NNQAQSSPYPPPQAPVPAPP HHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR 221
           TGVYAQPPSQAWQSVWQ AAEDGSYASG SSGQGNLDGQR
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQR 220

[Close]

BLAST of Carg10279-RA vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.2e-93
Identity = 190/234 (81.20%), Postives = 199/234 (85.04%), Query Frame = 0


Query: 1   MESNNQ-----AQSSPYPPPQAPVPA----PPLHHLLQQQQQQLQMFWSFQRQEIEQVND 60
           M++NNQ     A   P PPP   + A       HHLLQQQQQQLQ+FW++QRQEIEQVND
Sbjct: 1   MDTNNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVND 60

Query: 61  FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 120
           FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ
Sbjct: 61  FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 120

Query: 121 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGPP 180
           KNDIAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG P
Sbjct: 121 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-P 180

Query: 181 GGMMIGRPAMDPTGVYAQPPSQAWQSVWQPA---AEDGSYASGGSSGQGNLDGQ 220
           GGMMIGRPAMDP GVY QPPSQAWQSVWQ +    +D SY SGGSSGQGNLDGQ
Sbjct: 181 GGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

[Close]

BLAST of Carg10279-RA vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.9e-90
Identity = 187/245 (76.33%), Postives = 196/245 (80.00%), Query Frame = 0


Query: 3   SNNQAQSSP---YPPPQA---PVPAPP-------------LHHLLQQQQQQLQMFWSFQR 62
           +NN  Q  P   YPP  A    +P PP              HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAA---EDGSYASGGSSGQG 220
           YPPMGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY SGGSSG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of Carg10279-RA vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.0e-59
Identity = 136/221 (61.54%), Postives = 151/221 (68.33%), Query Frame = 0


Query: 11  PYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQ--VNDFKNHQLPLARIKKIMKA 70
           P  P     PA P HHLLQQQQ QLQ FW++QRQE E+   +DFKNHQLPLARIKKIMKA
Sbjct: 22  PGVPGAGGPPAVPHHHLLQQQQAQLQAFWAYQRQEAERASASDFKNHQLPLARIKKIMKA 81

Query: 71  DEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 130
           DEDVRMISAEAP+LFAKACELFILELTIRSWLHAEENKRRTLQ+ND+AAAI RTD+FDFL
Sbjct: 82  DEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFL 141

Query: 131 VDIVPRDEIKDEAG------LGGMVGAT-----ASGVPYYYPPMGQPAGPPGGMMIGRPA 190
           VDIVPR+E K+E G       GG  GA      A+G+PYYYPPMGQPA       +  PA
Sbjct: 142 VDIVPREEAKEEPGSALGFAAGGPAGAVGAAGPAAGLPYYYPPMGQPAPMMPAWHV--PA 201

Query: 191 MDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDG 219
            DP          AWQ    P  + G+  S    GQ    G
Sbjct: 202 WDP----------AWQQGAAPDVDQGAAGSFSEEGQQGFAG 230

[Close]

BLAST of Carg10279-RA vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-52
Identity = 119/186 (63.98%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 22  PPLHHLLQQQQ----QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISA 81
           P  H + QQQQ    QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 32  PAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISA 91

Query: 82  EAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI 141
           EAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR+++
Sbjct: 92  EAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDL 151

Query: 142 KDEA-GLGGMVGATASGVPY-YYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSV 201
           +DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P   WQ  
Sbjct: 152 RDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP--MWQ-- 211

[Close]

BLAST of Carg10279-RA vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-52
Identity = 103/137 (75.18%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 25  HHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFA 84
           HH  QQQQQQLQMFW+ Q QEIE   DFKNH LPLARIKKIMKADEDVRMISAEAP++FA
Sbjct: 45  HHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFA 104

Query: 85  KACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLG 144
           KACE+FILELT+R+W+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E GLG
Sbjct: 105 KACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE-GLG 164

Query: 145 ---GMVGATASGVPYYY 159
              G + +     PYYY
Sbjct: 165 VTKGTIPSVVGSPPYYY 180

[Close]

BLAST of Carg10279-RA vs. ExPASy TrEMBL
Match: A0A6J1JJG4 (nuclear transcription factor Y subunit C-1 OS=Cucurbita maxima OX=3661 GN=LOC111484989 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.5e-118
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Carg10279-RA vs. ExPASy TrEMBL
Match: A0A6J1E6P4 (nuclear transcription factor Y subunit C-1-like OS=Cucurbita moschata OX=3662 GN=LOC111429907 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.0e-117
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGG+MIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGLMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Carg10279-RA vs. ExPASy TrEMBL
Match: A0A6J1C352 (nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 GN=LOC111007012 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.4e-116
Identity = 216/219 (98.63%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           MESNNQAQSSPYPPPQAPVPAPP HHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASGGSSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Carg10279-RA vs. ExPASy TrEMBL
Match: A0A5D3BF73 (Nuclear transcription factor Y subunit C-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00510 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.1e-115
Identity = 214/220 (97.27%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           M++NNQAQSSPYPPPQAPVPAPP HHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR 221
           TGVYAQPPSQAWQSVWQ AAEDGSYASG SSGQGNLDGQR
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQR 220

[Close]

BLAST of Carg10279-RA vs. ExPASy TrEMBL
Match: A0A0A0LNK7 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G001515 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.3e-114
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60
           M++NNQAQSSPYPPPQAPVPAPP HHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA
Sbjct: 1   MDANNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLA 60

Query: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120
           RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT
Sbjct: 61  RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 120

Query: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDP 180
           RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAG PGGMMIGRPAMDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 181 TGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQ 220
           TGVYAQPPSQAWQSVWQ AAEDGSYASG SSGQGNLDGQ
Sbjct: 181 TGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQ 219

[Close]

BLAST of Carg10279-RA vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-94
Identity = 190/234 (81.20%), Postives = 199/234 (85.04%), Query Frame = 0


Query: 1   MESNNQ-----AQSSPYPPPQAPVPA----PPLHHLLQQQQQQLQMFWSFQRQEIEQVND 60
           M++NNQ     A   P PPP   + A       HHLLQQQQQQLQ+FW++QRQEIEQVND
Sbjct: 1   MDTNNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVND 60

Query: 61  FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 120
           FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ
Sbjct: 61  FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQ 120

Query: 121 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGPP 180
           KNDIAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG P
Sbjct: 121 KNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-P 180

Query: 181 GGMMIGRPAMDPTGVYAQPPSQAWQSVWQPA---AEDGSYASGGSSGQGNLDGQ 220
           GGMMIGRPAMDP GVY QPPSQAWQSVWQ +    +D SY SGGSSGQGNLDGQ
Sbjct: 181 GGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

[Close]

BLAST of Carg10279-RA vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 332.8 bits (852), Expect = 2.1e-91
Identity = 187/245 (76.33%), Postives = 196/245 (80.00%), Query Frame = 0


Query: 3   SNNQAQSSP---YPPPQA---PVPAPP-------------LHHLLQQQQQQLQMFWSFQR 62
           +NN  Q  P   YPP  A    +P PP              HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAA---EDGSYASGGSSGQG 220
           YPPMGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY SGGSSG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of Carg10279-RA vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 332.8 bits (852), Expect = 2.1e-91
Identity = 187/245 (76.33%), Postives = 196/245 (80.00%), Query Frame = 0


Query: 3   SNNQAQSSP---YPPPQA---PVPAPP-------------LHHLLQQQQQQLQMFWSFQR 62
           +NN  Q  P   YPP  A    +P PP              HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAA---EDGSYASGGSSGQG 220
           YPPMGQPA  PGGMMIGRPAMDP+GVYAQPPSQAWQSVWQ +A   +D SY SGGSSG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of Carg10279-RA vs. TAIR 10
Match: AT1G54830.2 (nuclear factor Y, subunit C3 )

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 119/186 (63.98%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 22  PPLHHLLQQQQ----QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISA 81
           P  H + QQQQ    QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 32  PAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISA 91

Query: 82  EAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI 141
           EAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR+++
Sbjct: 92  EAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDL 151

Query: 142 KDEA-GLGGMVGATASGVPY-YYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSV 201
           +DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P   WQ  
Sbjct: 152 RDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP--MWQ-- 211

[Close]

BLAST of Carg10279-RA vs. TAIR 10
Match: AT1G54830.1 (nuclear factor Y, subunit C3 )

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-53
Identity = 119/186 (63.98%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 22  PPLHHLLQQQQ----QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISA 81
           P  H + QQQQ    QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 32  PAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISA 91

Query: 82  EAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI 141
           EAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR+++
Sbjct: 92  EAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDL 151

Query: 142 KDEA-GLGGMVGATASGVPY-YYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSV 201
           +DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P   WQ  
Sbjct: 152 RDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP--MWQ-- 211

The following BLAST results are available for this feature:

BLAST of Carg10279-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023061.1	2.5e-118	100.00	Nuclear transcription factor Y subunit C-1, partial [Cucurbita argyrosperma subs...	[more]
XP_022987443.1	9.4e-118	100.00	nuclear transcription factor Y subunit C-1 [Cucurbita maxima] >XP_023516854.1 nu...	[more]
XP_022921750.1	2.1e-117	99.54	nuclear transcription factor Y subunit C-1-like [Cucurbita moschata]	[more]
XP_022134838.1	2.0e-115	98.63	nuclear transcription factor Y subunit C-1-like [Momordica charantia]	[more]
KAA0057769.1	1.3e-114	97.27	nuclear transcription factor Y subunit C-1 [Cucumis melo var. makuwa] >TYJ98450....	[more]

BLAST of Carg10279-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMP0	2.2e-93	81.20	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FMV5	2.9e-90	76.33	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	6.0e-59	61.54	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9ZVL3	1.9e-52	63.98	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8LCG7	3.2e-52	75.18	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg10279-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JJG4	4.5e-118	100.00	nuclear transcription factor Y subunit C-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1E6P4	1.0e-117	99.54	nuclear transcription factor Y subunit C-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1C352	9.4e-116	98.63	nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 G...	[more]
A0A5D3BF73	6.1e-115	97.27	Nuclear transcription factor Y subunit C-1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0LNK7	2.3e-114	97.26	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G0015...	[more]

BLAST of Carg10279-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48590.1	1.5e-94	81.20	nuclear factor Y, subunit C1	[more]
AT5G63470.1	2.1e-91	76.33	nuclear factor Y, subunit C4	[more]
AT5G63470.2	2.1e-91	76.33	nuclear factor Y, subunit C4	[more]
AT1G54830.2	1.3e-53	63.98	nuclear factor Y, subunit C3	[more]
AT1G54830.1	1.3e-53	63.98	nuclear factor Y, subunit C3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 24..134 e-value: 3.9E-46 score: 158.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 29..128
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 56..119 e-value: 2.2E-17 score: 63.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..220
None	No IPR available	PANTHER	PTHR10252:SF107	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4	coord: 4..219
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 4..219

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10279	Carg10279	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10279-RA:1	Carg10279-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10279-RA:cds	Carg10279-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10279-RA	Carg10279-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific