Carg09151-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09151-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 1340139 .. 1341576 (-)
Sequence length775
RNA-Seq ExpressionCarg09151-RA
SyntenyCarg09151-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGTTTTAGAAACTAAATGACTGAAACACCCTTCCACATAAGAAATTCATTGGGGCTATATTCGTCTTCACGCACGATCAGAAGCCCTAGTAATGCAAATGCTAGGTATTTTTTCCCTCCATTTGCTTTGGTCGATCCTGCAGTCCGGCGGCTTGTCTTCAATTCTCACGTCCTCTTTCGTGTAAGGTATCTATCCAAATCCTTCTTCGATCCATGCTGATCTCTTTGGTTCTTTGCTCTGTTCAGATTCGCAGCATTTAAGGCAGTTCTTATTCGACTTCTCTGCGAGATTTTTGGTTATTTGTATTTTTCTGTTTCTTTTGCCTTTATTCATTACTGTTTTTTATCTGCTGGTGAGAATCACTCGGTCGTTGCTTGTGGAATACCCTGCATAAAATTTTCGAGTGCTAATTAAATAAAGACCGTCGTGATTTAAATTGTCAAATTCGGGGTGTTTAGCATTGTAGTTCTTATTCTTGCAGGACATTGTTTATGAGTTTAAAAACTTGCCTTGCTATGCTGATATCTTCCTCGATGCCTTGGTTTAAATATTTAAGTTATTGGAATTTTAACTCGCTTGTGCTTTCTTAAAGTTGGGCTCTTTTACTTTACTTTTATAGTTTTATAGAACATTCTGGACTGATATTCATAAGCAATTCTGTTTGTGCATCAGTTTACTTGTTCCTACACTTAATGACTCATTGGGTTGTTCAAAATGGGAACTTGAAGCTGCATAACCAGTAATTTTTGGTAGATTGTCTTGGAAATTGCTGGTTGGGAGTAATTATTAGGGAAAATATTCGCTTTGGTATTGATTTTCTAAGATTTGTTTTTCGTGTGTTTGTTTAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCAGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGATCAAGTTCCCAGTTCCCCGGTTTGCAGTTGCTAAATGTTATCCTTTTATCTTACCTACAAATAGAATGCTTTACATCATTTTTCCCTATTGAAGTGTGATTTTAGTGACTAACTTCTCCAAGGCTTTGCTTCCATGGCAGAATATGTGAACTGGATGAGTAATTTAATTGAGTTCTGAAACGATAATTTTGTGTTTATTTACCAACTGCTTAATATTTTTGGTGTTACTTTGGTCATGCAAGTCTGTTAAGTTTTAAATGATGGTTTCAATAATATGCAATTTATTCTTATCCAAGAAAATATGTAAATTAGGTGATATAGGATCATAAAATGTATCTCTTTTCTTACCCCCTTTACCCTTTACCCTGGTTCTTTTTCATGG

mRNA sequence

TTAGTTTTAGAAACTAAATGACTGAAACACCCTTCCACATAAGAAATTCATTGGGGCTATATTCGTCTTCACGCACGATCAGAAGCCCTAGTAATGCAAATGCTAGGTATTTTTTCCCTCCATTTGCTTTGGTCGATCCTGCAGTCCGGCGGCTTGTCTTCAATTCTCACGTCCTCTTTCGTGTAAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCAGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGATCAAGTTCCCAGTTCCCCGGTTTGCAGTTGCTAAATGTTATCCTTTTATCTTACCTACAAATAGAATGCTTTACATCATTTTTCCCTATTGAAGTGTGATTTTAGTGACTAACTTCTCCAAGGCTTTGCTTCCATGGCAGAATATGTGAACTGGATGAGTAATTTAATTGAGTTCTGAAACGATAATTTTGTGTTTATTTACCAACTGCTTAATATTTTTGGTGTTACTTTGGTCATGCAAGTCTGTTAAGTTTTAAATGATGGTTTCAATAATATGCAATTTATTCTTATCCAAGAAAATATGTAAATTAGGTGATATAGGATCATAAAATGTATCTCTTTTCTTACCCCCTTTACCCTTTACCCTGGTTCTTTTTCATGG

Coding sequence (CDS)

ATGACTGAAACACCCTTCCACATAAGAAATTCATTGGGGCTATATTCGTCTTCACGCACGATCAGAAGCCCTAGTAATGCAAATGCTAGGTATTTTTTCCCTCCATTTGCTTTGGTCGATCCTGCAGTCCGGCGGCTTGTCTTCAATTCTCACGTCCTCTTTCGTGTAAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAG

Protein sequence

MTETPFHIRNSLGLYSSSRTIRSPSNANARYFFPPFALVDPAVRRLVFNSHVLFRVRNGIADQACCGGQSDG
Homology
[Close]
BLAST of Carg09151-RA vs. NCBI nr
Match: KAG6587641.1 (hypothetical protein SDJN03_16206, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021601.1 hypothetical protein SDJN02_15327 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.0e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MTETPFHIRNSLGLYSSSRTIRSPSNANARYFFPPFALVDPAVRRLVFNSHVLFRVRNGI 60
          MTETPFHIRNSLGLYSSSRTIRSPSNANARYFFPPFALVDPAVRRLVFNSHVLFRVRNGI
Sbjct: 1  MTETPFHIRNSLGLYSSSRTIRSPSNANARYFFPPFALVDPAVRRLVFNSHVLFRVRNGI 60

Query: 61 ADQACCGGQSDG 73
          ADQACCGGQSDG
Sbjct: 61 ADQACCGGQSDG 72

The following BLAST results are available for this feature:
BLAST of Carg09151-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587641.13.0e-33100.00hypothetical protein SDJN03_16206, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg09151-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09151-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09151-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg09151Carg09151gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09151-RA:2Carg09151-RA:2exon
Carg09151-RA:1Carg09151-RA:1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09151-RA:three_prime_utrCarg09151-RA:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09151-RA:cdsCarg09151-RA:cds_2CDS
Carg09151-RA:cdsCarg09151-RA:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09151-RA:five_prime_utrCarg09151-RA:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg09151-RACarg09151-RA-proteinpolypeptide