Carg09055-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09055-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 1818876 .. 1819689 (-)
Sequence length201
RNA-Seq ExpressionCarg09055-RA
SyntenyCarg09055-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATGGATGGTGGTAATGGTGGGTCTAAACAGCTTGAACTGCAGGTAAAGATTACTTTTTATTGGTAAAATTGAGTTGGAATGTTGGTTCAATTTGGTGAATAGGTTTCAAACTCTTGCACTCTTTTCTTTGAAGATTAGAAAATGTTCTATTCTGATTTAGTTGGTCACCATAGCAAGACCAGTTAAAACTTCCAAGCAATAGAATCAATCTGCTTCCGGTGTGTTGGTATTTCATCTGACTTTTTGGAATGATTCTGTCTGATGAAGATGTATTCCAACACCAATGAACTATTTAGCATTGGTAAACTAAATAGCTTTTGCTTTTCGATAATATTGACCCATTTGCAAAGCTCTCAATCCAAAAACTTTCTCCCTTACCTATCTCCATGTTTGGAAACTTTAGGGAGTGAGCCAATGCAACCAGAGAGGGTGTATAGTGGTAGGGGAAGAGAGGTGGTGGGGAGACAGGAGGCCACACATGATATGAATGGGGGCTGGGAATTGGGGAACATATTCTCTGATTGATTTGCGGACATGGGTATCAGACCCATGTTCTCAATACTCAAACTCTCATTTGACTGCCCCTTCAATATTAATCATTCCATCTTCTTTTTCAATTCTGTTTATCTATCTTGCTTTGATGTTAGTATATCAGAGTGATAACCACGAGGAGTTCAGTTCATTCCAGAGGATGTTCAGCCATCTCTCTCATAGAAAAATTACTTCAAACAAAATTGATCAAACTATTGATAAGCTTCAAAATCAAATTATCAAGTCACCAGATTACAGATTGGAGAATGCAATCTAA

mRNA sequence

ATGCTGATGGATGGTGGTAATGGTGGGTCTAAACAGCTTGAACTGCAGAGTGATAACCACGAGGAGTTCAGTTCATTCCAGAGGATGTTCAGCCATCTCTCTCATAGAAAAATTACTTCAAACAAAATTGATCAAACTATTGATAAGCTTCAAAATCAAATTATCAAGTCACCAGATTACAGATTGGAGAATGCAATCTAA

Coding sequence (CDS)

ATGCTGATGGATGGTGGTAATGGTGGGTCTAAACAGCTTGAACTGCAGAGTGATAACCACGAGGAGTTCAGTTCATTCCAGAGGATGTTCAGCCATCTCTCTCATAGAAAAATTACTTCAAACAAAATTGATCAAACTATTGATAAGCTTCAAAATCAAATTATCAAGTCACCAGATTACAGATTGGAGAATGCAATCTAA

Protein sequence

MLMDGGNGGSKQLELQSDNHEEFSSFQRMFSHLSHRKITSNKIDQTIDKLQNQIIKSPDYRLENAI
Homology
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BLAST of Carg09055-RA vs. NCBI nr
Match: KAG7021696.1 (hypothetical protein SDJN02_15422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MLMDGGNGGSKQLELQSDNHEEFSSFQRMFSHLSHRKITSNKIDQTIDKLQNQIIKSPDY 60
          MLMDGGNGGSKQLELQSDNHEEFSSFQRMFSHLSHRKITSNKIDQTIDKLQNQIIKSPDY
Sbjct: 1  MLMDGGNGGSKQLELQSDNHEEFSSFQRMFSHLSHRKITSNKIDQTIDKLQNQIIKSPDY 60

Query: 61 RLENAI 67
          RLENAI
Sbjct: 61 RLENAI 66

The following BLAST results are available for this feature:
BLAST of Carg09055-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021696.11.7e-27100.00hypothetical protein SDJN02_15422, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg09055-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09055-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09055-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg09055Carg09055gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09055-RA:2Carg09055-RA:2exon
Carg09055-RA:1Carg09055-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09055-RA:cdsCarg09055-RA:cds_2CDS
Carg09055-RA:cdsCarg09055-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg09055-RACarg09055-RA-proteinpolypeptide