Carg09047-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09047-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 1861581 .. 1862176 (+)
Sequence length490
RNA-Seq ExpressionCarg09047-RA
SyntenyCarg09047-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTCATACCTCATCCACCAATGCAGTTGGGTCGGTAAACTCGGCCTTATTAACCAAGTCCAGCGTGTCGAAGTATCTGATATACTAATGTGCAACAGTACTGCTCTTAATTTACATGGTTCATCTGTGTGCGTGTGCAGGGTCATTAGATGGTTGTTGGAGATGCGAGACCGAGTAGAGTGGAAAGTGATGGTGACGAGAGGTCGATACCTTACAGATGGTTCTAGTTTGACTGCTGTGGAATTCACTTCCATTTGCTTAGTCCCGACTGCCCTGTCTATTTGAAGCCCACTTTACACTCCCTCCCTAAACTAGTGGTTGTTTATGTTTCGTTGTTTTTGGACTGATTACTTTAGGAGCTCCAAATTCACCAGCTTGTTATTTAAATGAAGTGAATTCTCAGGATCTTGTCGTCCCCTCCCAACTCTATCTATGCACAGACACAATAAGAACTCTTCCTTACGTATGTATAAAGTAACTGATAAAATGTTGTCCATTTCAAGTGCCAGAAGATTAATCTCAGTTCGTAGTTGCAATATCTTCCAGACTGCTTGAAACTTTTGTGCTATTTGTATACGAAATTCTCTTTATA

mRNA sequence

ATGAACCTCATACCTCATCCACCAATGCAGTTGGGTCGGGTCATTAGATGGTTGTTGGAGATGCGAGACCGAGTAGAGTGGAAAGTGATGGTGACGAGAGGTCGATACCTTACAGATGGTTCTAGTTTGACTGCTGTGGAATTCACTTCCATTTGCTTAGTCCCGACTGCCCTGTCTATTTGAAGCCCACTTTACACTCCCTCCCTAAACTAGTGGTTGTTTATGTTTCGTTGTTTTTGGACTGATTACTTTAGGAGCTCCAAATTCACCAGCTTGTTATTTAAATGAAGTGAATTCTCAGGATCTTGTCGTCCCCTCCCAACTCTATCTATGCACAGACACAATAAGAACTCTTCCTTACGTATGTATAAAGTAACTGATAAAATGTTGTCCATTTCAAGTGCCAGAAGATTAATCTCAGTTCGTAGTTGCAATATCTTCCAGACTGCTTGAAACTTTTGTGCTATTTGTATACGAAATTCTCTTTATA

Coding sequence (CDS)

ATGAACCTCATACCTCATCCACCAATGCAGTTGGGTCGGGTCATTAGATGGTTGTTGGAGATGCGAGACCGAGTAGAGTGGAAAGTGATGGTGACGAGAGGTCGATACCTTACAGATGGTTCTAGTTTGACTGCTGTGGAATTCACTTCCATTTGCTTAGTCCCGACTGCCCTGTCTATTTGA

Protein sequence

MNLIPHPPMQLGRVIRWLLEMRDRVEWKVMVTRGRYLTDGSSLTAVEFTSICLVPTALSI
Homology
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BLAST of Carg09047-RA vs. NCBI nr
Match: KAG7021703.1 (hypothetical protein SDJN02_15430, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 5.6e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MNLIPHPPMQLGRVIRWLLEMRDRVEWKVMVTRGRYLTDGSSLTAVEFTSICLVPTALSI 60
          MNLIPHPPMQLGRVIRWLLEMRDRVEWKVMVTRGRYLTDGSSLTAVEFTSICLVPTALSI
Sbjct: 1  MNLIPHPPMQLGRVIRWLLEMRDRVEWKVMVTRGRYLTDGSSLTAVEFTSICLVPTALSI 60

The following BLAST results are available for this feature:
BLAST of Carg09047-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021703.15.6e-25100.00hypothetical protein SDJN02_15430, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg09047-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09047-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09047-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006605G2 nidogen/fibulin G2FPROSITEPS50993NIDOGEN_G2coord: 1..60
score: 8.61044

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg09047Carg09047gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09047-RA:1Carg09047-RA:1exon
Carg09047-RA:2Carg09047-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09047-RA:cdsCarg09047-RA:cdsCDS
Carg09047-RA:cdsCarg09047-RA:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg09047-RA:three_prime_utrCarg09047-RA:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg09047-RACarg09047-RA-proteinpolypeptide