Carg08536-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08536-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Zinc finger matrin-type protein 1, putative isoform 1
Location	Carg_Chr02: 5102512 .. 5104908 (-)
Sequence length	1296
RNA-Seq Expression	Carg08536-RA
Synteny	Carg08536-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCAAGAAGTGAAGAAGAATTCCATAGGGGAGTGGCTCTTCGTTTTCCCGTTCAGAATTTTGGTTCCACAATTCTGATTCTCACTTTCTTCCGATCATCATTTCACTGATTCACCACAATTACAGCGCCAATGATCACTCTGGCTTCTGCTTATTTATCATCATCCCCTTCCAATTTCTCTTCTCTCAACCTTCTTCGCCTCACCAAACCCCCTTTCACCTTCTCAACTTCACTCTCCAATCTCAAACCCTTAAATCCCTCCCACAAATCAGCTTCTAATCAGGTAAAAATTGCTCCGTCCCCTCAGTTCCCCTGTTTCCGACACTCTGATTTGGATTTCGAGTGAAATAAGTTACCCACTTTGATCGCAGAGGACGACGACCCGAAATGGGATTTGTCGGGCGGAATTGGGAAACGATGCGCCTTTCGCTATTGCGATCGGGGCTTGCATTCTTAGTTCTCTTGTTCTTCCACCAGCTGGCGGTGGTTCCGATGATGATAGCGATGCCGTTATGGATTCCACTGATGCCAGGCTCGCTGTCATGGGCATCATTAGCTTTATCCCCTACTTCAACTGGCTGGTGTGCATGTTTTAGATTTTCAGTTCAATTTTTAGTTTGGATGTTGATTTTTAAAGAAATTATTTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGGTTGATTGGATAGAGTTGGGTTTTTGCGTGGCTTGATTCTGGGAAAAGACGTTATGCTGTGTATGCTATCGTGTATTTGGCTCCTTATCTAAGGTGATTTTCAATTCTTGGGGTTTTCTTGTTTTTCTTCCCTTCAAACTCACTGAGATGTGAAATTTTGAATATTAATCTGTAGCTGTGTTGGTTGAACTAGTTGGTTAAATTTCTAAGAACTCAAAAACAAGTAATGAGCCATGTAAAGAGAAGAATGTGCAGAATGTGGATCGCATGGGTTTTCTGTCATTTATGAAGTTACAAAGCCTCAGTAGTGTGCTTATCAAAATTTACTGGGCAAGAGGTTATGAAAAAGCATTTCATTTTGTTATTGATGAGTATTTTCTACAAGAATTTTGGTCTTATAAACTTGATTTGTTGGGGGGGGTTGCCATTGTGGTTATTAGGAGGTTTCAACCCTCAGTGGTGTGAGTATGTTAGAGCTAAATTACACCATCTGCAGGTGTATTTGAGACTTTGGTCATGTGTAACAACCCAAGCCCACCGCTATCTAATATTGTCCTTTTTGGGCTTTCCCTTCAAGATTTTTAGAACGTATATGCTAGGGAGAGGTTTTCACACGTTTATAAAGAATGTTTCATGCTCCTCCCAAACTGACGTGGGTTCTCATAGAATGAACGTCATTCATTATTTAAGTAGCATGCACAGGCACCATTATGTTATTCTCACCATAATTTTGCATCTCGTTATCAGGTCAAATTTATCGTTGTCACCCGATGAGAGTTGGCTTCCTATTGTCAGTATACTTATCTGCATAGCTCACATTCAGGTATCTTCACTAGTTTCTTCCTTGTCCTTCGAACTATTCACTAGAAGTTTTGCAAAATTCTGGTCATGACATGAACGCCAATGCAAACAGCATACTCTCATATTGAAATGTTGTACCATTAGCTTGTTTCTTGTATCACAACTTTGGATTTACTTGTAGGTTGAAGCAAGCATTAAAAATGGAGATATTCAACCCTTCCAAATATTCGGTAAGACGTCCAATCAAATTTCTCGGACGAAGATAGGGAGAGGCCATTTGAAGGGGTCCCAAGGACCAACTAAAAAGGTAAACTCTATATTACATAGACAAATTCAATGTACATGTGTGTTGTAATCTGAGTCTTATATGAGCTGTCTTACCTTATATTGAAGAGTGGCAAGAAAAGGGATATGAAGCTTCCATCTGCTGAAGAACAATTGAGAGGTGAGATTAAAGGATGGGGAGATTATAAAGAGACATTAGATCATGAACAATACAATGAAGAATGGGATGACGAACAGAGGAGAAAACGTTAGGACATAGTTCTTTCTTGAAGTTGAATTATACAGCATGATAGTTCTAAACATGTTTATTACATACAGAATGAAGTCACTTGCAACCATTTCCATGGAGCTTACATGTTCTTACAACTGCTGCAATTGTTCTGCAAAACTTAGCCTTCTGTTCTTATTCTCACTTAGTTTACTCTTCTTTTGCCGTTCGATATTGAAATTTCTGTAGCAAACATCACAAGGAACTATAAATACAGGATTGAGTATGGTAGTTTAATATTTGTATCAGAAACGTCAAATTTCTGCAATGTCATACAAGGAGTATAGATTCGTGGTAGATGCTGTCGATTTAGGTATAGCCTAAATGGTTAGGTCATCGTTTTTCGTTGGTTTTAGATTC

mRNA sequence

TGCCAAGAAGTGAAGAAGAATTCCATAGGGGAGTGGCTCTTCGTTTTCCCGTTCAGAATTTTGGTTCCACAATTCTGATTCTCACTTTCTTCCGATCATCATTTCACTGATTCACCACAATTACAGCGCCAATGATCACTCTGGCTTCTGCTTATTTATCATCATCCCCTTCCAATTTCTCTTCTCTCAACCTTCTTCGCCTCACCAAACCCCCTTTCACCTTCTCAACTTCACTCTCCAATCTCAAACCCTTAAATCCCTCCCACAAATCAGCTTCTAATCAGAGGACGACGACCCGAAATGGGATTTGTCGGGCGGAATTGGGAAACGATGCGCCTTTCGCTATTGCGATCGGGGCTTGCATTCTTAGTTCTCTTGTTCTTCCACCAGCTGGCGGTGGTTCCGATGATGATAGCGATGCCGTTATGGATTCCACTGATGCCAGGCTCGCTGTCATGGGCATCATTAGCTTTATCCCCTACTTCAACTGGCTGAGTTGGGTTTTTGCGTGGCTTGATTCTGGGAAAAGACGTTATGCTGTGTATGCTATCGTGTATTTGGCTCCTTATCTAAGGTCAAATTTATCGTTGTCACCCGATGAGAGTTGGCTTCCTATTGTCAGTATACTTATCTGCATAGCTCACATTCAGGTTGAAGCAAGCATTAAAAATGGAGATATTCAACCCTTCCAAATATTCGGTAAGACGTCCAATCAAATTTCTCGGACGAAGATAGGGAGAGGCCATTTGAAGGGGTCCCAAGGACCAACTAAAAAGAGTGGCAAGAAAAGGGATATGAAGCTTCCATCTGCTGAAGAACAATTGAGAGGTGAGATTAAAGGATGGGGAGATTATAAAGAGACATTAGATCATGAACAATACAATGAAGAATGGGATGACGAACAGAGGAGAAAACGTTAGGACATAGTTCTTTCTTGAAGTTGAATTATACAGCATGATAGTTCTAAACATGTTTATTACATACAGAATGAAGTCACTTGCAACCATTTCCATGGAGCTTACATGTTCTTACAACTGCTGCAATTGTTCTGCAAAACTTAGCCTTCTGTTCTTATTCTCACTTAGTTTACTCTTCTTTTGCCGTTCGATATTGAAATTTCTGTAGCAAACATCACAAGGAACTATAAATACAGGATTGAGTATGGTAGTTTAATATTTGTATCAGAAACGTCAAATTTCTGCAATGTCATACAAGGAGTATAGATTCGTGGTAGATGCTGTCGATTTAGGTATAGCCTAAATGGTTAGGTCATCGTTTTTCGTTGGTTTTAGATTC

Coding sequence (CDS)

ATGATCACTCTGGCTTCTGCTTATTTATCATCATCCCCTTCCAATTTCTCTTCTCTCAACCTTCTTCGCCTCACCAAACCCCCTTTCACCTTCTCAACTTCACTCTCCAATCTCAAACCCTTAAATCCCTCCCACAAATCAGCTTCTAATCAGAGGACGACGACCCGAAATGGGATTTGTCGGGCGGAATTGGGAAACGATGCGCCTTTCGCTATTGCGATCGGGGCTTGCATTCTTAGTTCTCTTGTTCTTCCACCAGCTGGCGGTGGTTCCGATGATGATAGCGATGCCGTTATGGATTCCACTGATGCCAGGCTCGCTGTCATGGGCATCATTAGCTTTATCCCCTACTTCAACTGGCTGAGTTGGGTTTTTGCGTGGCTTGATTCTGGGAAAAGACGTTATGCTGTGTATGCTATCGTGTATTTGGCTCCTTATCTAAGGTCAAATTTATCGTTGTCACCCGATGAGAGTTGGCTTCCTATTGTCAGTATACTTATCTGCATAGCTCACATTCAGGTTGAAGCAAGCATTAAAAATGGAGATATTCAACCCTTCCAAATATTCGGTAAGACGTCCAATCAAATTTCTCGGACGAAGATAGGGAGAGGCCATTTGAAGGGGTCCCAAGGACCAACTAAAAAGAGTGGCAAGAAAAGGGATATGAAGCTTCCATCTGCTGAAGAACAATTGAGAGGTGAGATTAAAGGATGGGGAGATTATAAAGAGACATTAGATCATGAACAATACAATGAAGAATGGGATGACGAACAGAGGAGAAAACGTTAG

Protein sequence

MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGICRAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNWLSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKNGDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGDYKETLDHEQYNEEWDDEQRRKR

Homology

[Close]

BLAST of Carg08536-RA vs. NCBI nr
Match: KAG7035513.1 (hypothetical protein SDJN02_02309 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 513.8 bits (1322), Expect = 8.5e-142
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC
Sbjct: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD
Sbjct: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQYNEEWDDEQRRKR
Sbjct: 241 YKETLDHEQYNEEWDDEQRRKR 262

[Close]

BLAST of Carg08536-RA vs. NCBI nr
Match: KAG6605602.1 (hypothetical protein SDJN03_02919, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 508.8 bits (1309), Expect = 2.7e-140
Identity = 260/262 (99.24%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQR TTRNGIC
Sbjct: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRRTTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLR EIKGWGD
Sbjct: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRDEIKGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQYNEEWDDEQRRKR
Sbjct: 241 YKETLDHEQYNEEWDDEQRRKR 262

[Close]

BLAST of Carg08536-RA vs. NCBI nr
Match: XP_022958724.1 (uncharacterized protein LOC111459865 isoform X1 [Cucurbita moschata])

HSP 1 Score: 503.1 bits (1294), Expect = 1.5e-138
Identity = 258/262 (98.47%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQR TTRNGIC
Sbjct: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRRTTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGKTSNQISRTKI RGHLKGSQGPTKKSGKKRDMKLPSAEEQLR EIKGWGD
Sbjct: 181 GDIQPFQIFGKTSNQISRTKIARGHLKGSQGPTKKSGKKRDMKLPSAEEQLRDEIKGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQ NEEWDDEQRRKR
Sbjct: 241 YKETLDHEQSNEEWDDEQRRKR 262

[Close]

BLAST of Carg08536-RA vs. NCBI nr
Match: XP_023534481.1 (uncharacterized protein LOC111796027 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534482.1 uncharacterized protein LOC111796027 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500.0 bits (1286), Expect = 1.3e-137
Identity = 255/262 (97.33%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQ+ TTRNGIC
Sbjct: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQKRTTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACIL+SLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILTSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGK SNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLR EI+GWGD
Sbjct: 181 GDIQPFQIFGKASNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRDEIRGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQ NEEWDDEQRRKR
Sbjct: 241 YKETLDHEQSNEEWDDEQRRKR 262

[Close]

BLAST of Carg08536-RA vs. NCBI nr
Match: XP_022958725.1 (uncharacterized protein LOC111459865 isoform X2 [Cucurbita moschata])

HSP 1 Score: 499.2 bits (1284), Expect = 2.2e-137
Identity = 258/262 (98.47%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQR TTRNGIC
Sbjct: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQR-TTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGKTSNQISRTKI RGHLKGSQGPTKKSGKKRDMKLPSAEEQLR EIKGWGD
Sbjct: 181 GDIQPFQIFGKTSNQISRTKIARGHLKGSQGPTKKSGKKRDMKLPSAEEQLRDEIKGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQ NEEWDDEQRRKR
Sbjct: 241 YKETLDHEQSNEEWDDEQRRKR 261

[Close]

BLAST of Carg08536-RA vs. ExPASy TrEMBL
Match: A0A6J1H5Y1 (uncharacterized protein LOC111459865 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459865 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 7.2e-139
Identity = 258/262 (98.47%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQR TTRNGIC
Sbjct: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRRTTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGKTSNQISRTKI RGHLKGSQGPTKKSGKKRDMKLPSAEEQLR EIKGWGD
Sbjct: 181 GDIQPFQIFGKTSNQISRTKIARGHLKGSQGPTKKSGKKRDMKLPSAEEQLRDEIKGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQ NEEWDDEQRRKR
Sbjct: 241 YKETLDHEQSNEEWDDEQRRKR 262

[Close]

BLAST of Carg08536-RA vs. ExPASy TrEMBL
Match: A0A6J1H4A9 (uncharacterized protein LOC111459865 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459865 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.0e-137
Identity = 258/262 (98.47%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQR TTRNGIC
Sbjct: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQR-TTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGKTSNQISRTKI RGHLKGSQGPTKKSGKKRDMKLPSAEEQLR EIKGWGD
Sbjct: 181 GDIQPFQIFGKTSNQISRTKIARGHLKGSQGPTKKSGKKRDMKLPSAEEQLRDEIKGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQ NEEWDDEQRRKR
Sbjct: 241 YKETLDHEQSNEEWDDEQRRKR 261

[Close]

BLAST of Carg08536-RA vs. ExPASy TrEMBL
Match: A0A6J1KAA9 (uncharacterized protein LOC111491538 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491538 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 251/262 (95.80%), Postives = 256/262 (97.71%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           M+TLASAYLSSSPSNFSSLNLLRL+KPPFTFSTSLSNLKPLNPSHKSASNQR TTRNGIC
Sbjct: 1   MVTLASAYLSSSPSNFSSLNLLRLSKPPFTFSTSLSNLKPLNPSHKSASNQRRTTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGK SNQIS T+IGRGHLKG +GPTKKSGKKRDMKLPSAEEQLR EI+GWGD
Sbjct: 181 GDIQPFQIFGKASNQISPTEIGRGHLKGFKGPTKKSGKKRDMKLPSAEEQLRDEIRGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQ NEEWDDEQRRKR
Sbjct: 241 YKETLDHEQSNEEWDDEQRRKR 262

[Close]

BLAST of Carg08536-RA vs. ExPASy TrEMBL
Match: A0A6J1K887 (uncharacterized protein LOC111491538 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491538 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.8e-134
Identity = 251/262 (95.80%), Postives = 256/262 (97.71%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           M+TLASAYLSSSPSNFSSLNLLRL+KPPFTFSTSLSNLKPLNPSHKSASNQR TTRNGIC
Sbjct: 1   MVTLASAYLSSSPSNFSSLNLLRLSKPPFTFSTSLSNLKPLNPSHKSASNQR-TTRNGIC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW
Sbjct: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN
Sbjct: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGK SNQIS T+IGRGHLKG +GPTKKSGKKRDMKLPSAEEQLR EI+GWGD
Sbjct: 181 GDIQPFQIFGKASNQISPTEIGRGHLKGFKGPTKKSGKKRDMKLPSAEEQLRDEIRGWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRKR 263
           YKETLDHEQ NEEWDDEQRRKR
Sbjct: 241 YKETLDHEQSNEEWDDEQRRKR 261

[Close]

BLAST of Carg08536-RA vs. ExPASy TrEMBL
Match: A0A6J1BQE6 (uncharacterized protein LOC111004499 OS=Momordica charantia OX=3673 GN=LOC111004499 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.7e-103
Identity = 200/261 (76.63%), Postives = 222/261 (85.06%), Query Frame = 0


Query: 1   MITLASAYLSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTRNGIC 60
           MI+LA A LSSSPSN SSL  LRL +PP TFSTSLSNLK LNP  K+AS+Q+    NG+C
Sbjct: 1   MISLAYASLSSSPSNLSSLK-LRLPRPPSTFSTSLSNLKSLNPCDKAASDQK-RIGNGVC 60

Query: 61  RAELGNDAPFAIAIGACILSSLVLPPAGGGSDDDSDAVMDSTDARLAVMGIISFIPYFNW 120
           RA+LGND PFA+AIGACILSS V P AGGGSDD+SDAV+DSTD R AVMGIISFIPYFNW
Sbjct: 61  RADLGNDGPFAVAIGACILSSFVFPVAGGGSDDESDAVIDSTDTRFAVMGIISFIPYFNW 120

Query: 121 LSWVFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKN 180
           LSWVFAWLDSG+R YAVYA+VYL PYLRSNLSLSP+ESWLPI SIL+CI HIQ+E SI+N
Sbjct: 121 LSWVFAWLDSGRRLYAVYALVYLVPYLRSNLSLSPEESWLPIASILLCIIHIQLEVSIRN 180

Query: 181 GDIQPFQIFGKTSNQISRTKIGRGHLKGSQGPTKKSGKKRDMKLPSAEEQLRGEIKGWGD 240
           GDIQPFQIFGKTS +IS T  GR H KGSQGP ++SG+K DMKLPS +EQLR EI+ WGD
Sbjct: 181 GDIQPFQIFGKTSKKISSTTRGRDHFKGSQGPPEESGEKEDMKLPSIQEQLRDEIRRWGD 240

Query: 241 YKETLDHEQYNEEWDDEQRRK 262
            KETLDHEQ N EWDDEQRRK
Sbjct: 241 SKETLDHEQSNGEWDDEQRRK 259

[Close]

BLAST of Carg08536-RA vs. TAIR 10
Match: AT5G41960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-45
Identity = 106/208 (50.96%), Postives = 136/208 (65.38%), Query Frame = 0


Query: 9   LSSSPSNFSSLNLLRLTKPPFTFSTSLSNLKPLNPSHKSASNQRTTTR--NGICRAELGN 68
           LSSS S ++   LL         S+S S+  PL  ++   + ++   +    ICRAE   
Sbjct: 12  LSSSASLYTKARLL---------SSSSSSPSPLPLAYPLQNPKKLCRKIERVICRAEFSQ 71

Query: 69  DAPFAIAIGACILSSLVLPPAGGGSDDDSD---AVMDSTDARLAVMGIISFIPYFNWLSW 128
           DAP   AIGACILSS V P A   +D++ +   + + STD RLA MGIISFIPYFNWLSW
Sbjct: 72  DAPLVTAIGACILSSFVFPVAKRVNDEEEEEENSAIVSTDMRLAAMGIISFIPYFNWLSW 131

Query: 129 VFAWLDSGKRRYAVYAIVYLAPYLRSNLSLSPDESWLPIVSILICIAHIQVEASIKNGDI 188
           VFAWLD+GK RYAVYA+VYL PYL SNLS+SP+ESWLPI SI++ I H+Q+EASI NGD+
Sbjct: 132 VFAWLDTGKSRYAVYALVYLVPYLSSNLSISPEESWLPITSIVLGIIHVQLEASIANGDV 191

Query: 189 QPFQIFGKTSNQ--ISRTKIG-RGHLKG 209
           +    F  TS+    S+ +I  + H KG
Sbjct: 192 ETLAFFRNTSDDDFSSKKRIHFKKHFKG 210

The following BLAST results are available for this feature:

BLAST of Carg08536-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035513.1	8.5e-142	100.00	hypothetical protein SDJN02_02309 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605602.1	2.7e-140	99.24	hypothetical protein SDJN03_02919, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958724.1	1.5e-138	98.47	uncharacterized protein LOC111459865 isoform X1 [Cucurbita moschata]	[more]
XP_023534481.1	1.3e-137	97.33	uncharacterized protein LOC111796027 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022958725.1	2.2e-137	98.47	uncharacterized protein LOC111459865 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg08536-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08536-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5Y1	7.2e-139	98.47	uncharacterized protein LOC111459865 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H4A9	1.0e-137	98.47	uncharacterized protein LOC111459865 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KAA9	1.3e-135	95.80	uncharacterized protein LOC111491538 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K887	1.8e-134	95.80	uncharacterized protein LOC111491538 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1BQE6	1.7e-103	76.63	uncharacterized protein LOC111004499 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of Carg08536-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41960.1	2.7e-45	50.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..235
None	No IPR available	PANTHER	PTHR36804	OSJNBA0013K16.11 PROTEIN	coord: 17..261

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg08536	Carg08536	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08536-RA:6	Carg08536-RA:6	exon
Carg08536-RA:5	Carg08536-RA:5	exon
Carg08536-RA:4	Carg08536-RA:4	exon
Carg08536-RA:3	Carg08536-RA:3	exon
Carg08536-RA:2	Carg08536-RA:2	exon
Carg08536-RA:1	Carg08536-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08536-RA:three_prime_utr	Carg08536-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08536-RA:cds	Carg08536-RA:cds_6	CDS
Carg08536-RA:cds	Carg08536-RA:cds_5	CDS
Carg08536-RA:cds	Carg08536-RA:cds_4	CDS
Carg08536-RA:cds	Carg08536-RA:cds_3	CDS
Carg08536-RA:cds	Carg08536-RA:cds_2	CDS
Carg08536-RA:cds	Carg08536-RA:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08536-RA:five_prime_utr	Carg08536-RA:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg08536-RA	Carg08536-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane