Carg08376-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08376-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	BEST Arabidopsis thaliana protein match is: s in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Location	Carg_Chr05: 3800167 .. 3800721 (+)
Sequence length	555
RNA-Seq Expression	Carg08376-RA
Synteny	Carg08376-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAAACTTTCATTGGGATATGAAGAGCAAAGTGATAGCAAGAACATCTTCAATAGGTTGTTCTTCTCGCAGCACTTATTACTGTGGAGCAGCTGAAGGAGTCCCTTTCAAATGGGAAACACAGCCAGGAACCCCCAAGGATCCACCCCCTCAAGACTTGCTTCCACCCCTCAGCCCTCCACCAGCAGTTATCAGCCTCGGGTTACCGCTACCGTGCATTGAGAAACCAAAAACCCGACCCCGACCCCGACCCACGATGAAGCTTAGGTTCTGGAGGAGGGTCAAGAAGAGTAGGGATGGTGGGAGAGCTGCCCAAGCAACAACTATAGATTATAGCAATGATAAGTTGGAAACATTTTCATTTCTCAGCTCGGACTGCGAGTTCATGGCTTCTCCTCGGGATTCTATGTCGTCGTCATCGTCTTCTTCATCTCCGTCGTCTCTCATCGAGTCGTTAACCGTACGAAATATGGGGAGGGTGTCACTTGGAAGGCCTTCTAGTTGCAGTACTGCTGGAAAAATTCATAGAATTCTGGCTTGTTACCATTGA

mRNA sequence

ATGGATGGAAACTTTCATTGGGATATGAAGAGCAAAGTGATAGCAAGAACATCTTCAATAGGTTGTTCTTCTCGCAGCACTTATTACTGTGGAGCAGCTGAAGGAGTCCCTTTCAAATGGGAAACACAGCCAGGAACCCCCAAGGATCCACCCCCTCAAGACTTGCTTCCACCCCTCAGCCCTCCACCAGCAGTTATCAGCCTCGGGTTACCGCTACCGTGCATTGAGAAACCAAAAACCCGACCCCGACCCCGACCCACGATGAAGCTTAGGTTCTGGAGGAGGGTCAAGAAGAGTAGGGATGGTGGGAGAGCTGCCCAAGCAACAACTATAGATTATAGCAATGATAAGTTGGAAACATTTTCATTTCTCAGCTCGGACTGCGAGTTCATGGCTTCTCCTCGGGATTCTATGTCGTCGTCATCGTCTTCTTCATCTCCGTCGTCTCTCATCGAGTCGTTAACCGTACGAAATATGGGGAGGGTGTCACTTGGAAGGCCTTCTAGTTGCAGTACTGCTGGAAAAATTCATAGAATTCTGGCTTGTTACCATTGA

Coding sequence (CDS)

ATGGATGGAAACTTTCATTGGGATATGAAGAGCAAAGTGATAGCAAGAACATCTTCAATAGGTTGTTCTTCTCGCAGCACTTATTACTGTGGAGCAGCTGAAGGAGTCCCTTTCAAATGGGAAACACAGCCAGGAACCCCCAAGGATCCACCCCCTCAAGACTTGCTTCCACCCCTCAGCCCTCCACCAGCAGTTATCAGCCTCGGGTTACCGCTACCGTGCATTGAGAAACCAAAAACCCGACCCCGACCCCGACCCACGATGAAGCTTAGGTTCTGGAGGAGGGTCAAGAAGAGTAGGGATGGTGGGAGAGCTGCCCAAGCAACAACTATAGATTATAGCAATGATAAGTTGGAAACATTTTCATTTCTCAGCTCGGACTGCGAGTTCATGGCTTCTCCTCGGGATTCTATGTCGTCGTCATCGTCTTCTTCATCTCCGTCGTCTCTCATCGAGTCGTTAACCGTACGAAATATGGGGAGGGTGTCACTTGGAAGGCCTTCTAGTTGCAGTACTGCTGGAAAAATTCATAGAATTCTGGCTTGTTACCATTGA

Protein sequence

MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLETFSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRILACYH

Homology

[Close]

BLAST of Carg08376-RA vs. NCBI nr
Match: KAG7029810.1 (hypothetical protein SDJN02_08153, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.9 bits (938), Expect = 2.0e-97
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120

Query: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL 180
           FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL
Sbjct: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL 180

Query: 181 ACYH 185
           ACYH
Sbjct: 181 ACYH 184

[Close]

BLAST of Carg08376-RA vs. NCBI nr
Match: XP_022929606.1 (uncharacterized protein LOC111436141 [Cucurbita moschata])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAVISLGLPLPCIEKPKT  RPRPTMKL FWRRVKKSRDGGRAAQATTIDYSNDKLET
Sbjct: 61  PPPAVISLGLPLPCIEKPKT--RPRPTMKLWFWRRVKKSRDGGRAAQATTIDYSNDKLET 120

Query: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL 180
           FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL
Sbjct: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL 180

Query: 181 ACYH 185
           ACYH
Sbjct: 181 ACYH 182

[Close]

BLAST of Carg08376-RA vs. NCBI nr
Match: XP_023546389.1 (uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 6.7e-93
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPF WETQPGTPKDPPPQDLLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFVWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAVISLGLPLPCIEKPKT  RPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET
Sbjct: 61  PPPAVISLGLPLPCIEKPKT--RPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120

Query: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL 180
           FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTV+NMGR SLGRPSSCSTAGKIHRIL
Sbjct: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVQNMGRASLGRPSSCSTAGKIHRIL 180

Query: 181 ACYH 185
           ACYH
Sbjct: 181 ACYH 182

[Close]

BLAST of Carg08376-RA vs. NCBI nr
Match: XP_022997465.1 (uncharacterized protein LOC111492375 [Cucurbita maxima])

HSP 1 Score: 341.7 bits (875), Expect = 4.0e-90
Identity = 177/187 (94.65%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAV+SLGLPLPCIEKPKT  RPRPTMKLRFWRRVKKSRD GRAAQATTIDYSN KLET
Sbjct: 61  PPPAVLSLGLPLPCIEKPKT--RPRPTMKLRFWRRVKKSRDDGRAAQATTIDYSNGKLET 120

Query: 121 FSFLSSDCEFMASPRDSM---SSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIH 180
           FSFLSSDCEFMASPRDSM   SSSSSSSSPSSLIESLTVR+MGRVSLGRPSSC TAGKIH
Sbjct: 121 FSFLSSDCEFMASPRDSMSSSSSSSSSSSPSSLIESLTVRHMGRVSLGRPSSCGTAGKIH 180

Query: 181 RILACYH 185
           RILACYH
Sbjct: 181 RILACYH 185

[Close]

BLAST of Carg08376-RA vs. NCBI nr
Match: KAG6598869.1 (hypothetical protein SDJN03_08647, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 173/183 (94.54%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120

Query: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSC--STAGKIHR 180
           FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLT+RNMGRVSLGRPSSC   T  K++ 
Sbjct: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTIRNMGRVSLGRPSSCVEQTERKLNL 180

Query: 181 ILA 182
            LA
Sbjct: 181 TLA 183

[Close]

BLAST of Carg08376-RA vs. ExPASy TrEMBL
Match: A0A6J1ENL5 (uncharacterized protein LOC111436141 OS=Cucurbita moschata OX=3662 GN=LOC111436141 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.0e-94
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAVISLGLPLPCIEKPKT  RPRPTMKL FWRRVKKSRDGGRAAQATTIDYSNDKLET
Sbjct: 61  PPPAVISLGLPLPCIEKPKT--RPRPTMKLWFWRRVKKSRDGGRAAQATTIDYSNDKLET 120

Query: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL 180
           FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL
Sbjct: 121 FSFLSSDCEFMASPRDSMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIHRIL 180

Query: 181 ACYH 185
           ACYH
Sbjct: 181 ACYH 182

[Close]

BLAST of Carg08376-RA vs. ExPASy TrEMBL
Match: A0A6J1K9Q8 (uncharacterized protein LOC111492375 OS=Cucurbita maxima OX=3661 GN=LOC111492375 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 177/187 (94.65%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAV+SLGLPLPCIEKPKT  RPRPTMKLRFWRRVKKSRD GRAAQATTIDYSN KLET
Sbjct: 61  PPPAVLSLGLPLPCIEKPKT--RPRPTMKLRFWRRVKKSRDDGRAAQATTIDYSNGKLET 120

Query: 121 FSFLSSDCEFMASPRDSM---SSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIH 180
           FSFLSSDCEFMASPRDSM   SSSSSSSSPSSLIESLTVR+MGRVSLGRPSSC TAGKIH
Sbjct: 121 FSFLSSDCEFMASPRDSMSSSSSSSSSSSPSSLIESLTVRHMGRVSLGRPSSCGTAGKIH 180

Query: 181 RILACYH 185
           RILACYH
Sbjct: 181 RILACYH 185

[Close]

BLAST of Carg08376-RA vs. ExPASy TrEMBL
Match: A0A5D3BQA0 (Putative OSBP(Oxysterol binding protein)-related protein 4B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00410 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.4e-64
Identity = 140/192 (72.92%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MDGN-FHWDMKSKVIARTSSIGCSSRSTYYCGAA-EGVPFKWETQPGTPKDPPPQDLLPP 60
           M+G  FHWDMK+KVI+RTSSIGCSS S YY G A +GVPFKWETQPGTPKDPPPQDLLPP
Sbjct: 1   MEGQLFHWDMKNKVISRTSSIGCSSHSIYYSGTANQGVPFKWETQPGTPKDPPPQDLLPP 60

Query: 61  LSPPPAVISLGLPLP-CIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDK 120
           LSPPPAV+SLG+P P CI++PK+R  PR  M+LRFW+++ KSRDGGRAAQ T ID+ NDK
Sbjct: 61  LSPPPAVLSLGVPKPACIDQPKSRSLPR--MRLRFWKKIMKSRDGGRAAQTTPIDHYNDK 120

Query: 121 LETFSFLSSDCEFMA--SPRDSMSS---SSSSSSPSSLIESLTVRNMGRVSLGRPSSCST 180
           LETFSFLSSDCEFMA  SPRDSMSS   SSSSSSPSS I+SL V N  +VS GRPSS + 
Sbjct: 121 LETFSFLSSDCEFMASPSPRDSMSSSSTSSSSSSPSSFIDSLNVGNTQKVSFGRPSSWNN 180

Query: 181 AGKIHRILACYH 185
           A +I+R+L CYH
Sbjct: 181 AWQINRMLVCYH 190

[Close]

BLAST of Carg08376-RA vs. ExPASy TrEMBL
Match: A0A5A7UK88 (Putative OSBP(Oxysterol binding protein)-related protein 4B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00410 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.0e-63
Identity = 139/192 (72.40%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MDGN-FHWDMKSKVIARTSSIGCSSRSTYYCGAA-EGVPFKWETQPGTPKDPPPQDLLPP 60
           M+G  FHWDMK+KVI+RTSSIGCSS S YY G A +GVPFKWETQPGTPKDPPPQDLLPP
Sbjct: 1   MEGQLFHWDMKNKVISRTSSIGCSSHSIYYSGTANQGVPFKWETQPGTPKDPPPQDLLPP 60

Query: 61  LSPPPAVISLGLPLP-CIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDK 120
           LSPPPAV+SLG+P P CI++PK+R  PR  M+LRFW+++ KSRDGGRAAQ T ID+ NDK
Sbjct: 61  LSPPPAVLSLGVPKPACIDQPKSRSLPR--MRLRFWKKIMKSRDGGRAAQTTPIDHYNDK 120

Query: 121 LETFSFLSSDCEFMA--SPRDSMSS---SSSSSSPSSLIESLTVRNMGRVSLGRPSSCST 180
           LETFSFLSSDCEFMA  SPRD MSS   SSSSSSPSS I+SL V N  +VS GRPSS + 
Sbjct: 121 LETFSFLSSDCEFMASPSPRDPMSSSSTSSSSSSPSSFIDSLNVGNTQKVSFGRPSSWNN 180

Query: 181 AGKIHRILACYH 185
           A +I+R+L CYH
Sbjct: 181 AWQINRMLVCYH 190

[Close]

BLAST of Carg08376-RA vs. ExPASy TrEMBL
Match: A0A6J1DGF8 (uncharacterized protein LOC111020830 OS=Momordica charantia OX=3673 GN=LOC111020830 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.8e-59
Identity = 131/187 (70.05%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60
           MDG FHWD KSKVI+RTSS+GCSSRS YYCG AEGVPFKWETQPGTPKDPPPQ++LPPLS
Sbjct: 1   MDGKFHWDTKSKVISRTSSVGCSSRSIYYCGTAEGVPFKWETQPGTPKDPPPQEMLPPLS 60

Query: 61  PPPAVISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLET 120
           PPPAV+SLGLP PCIE+P   PRPR  M LRFWR+ +K R+ G            DKLET
Sbjct: 61  PPPAVLSLGLPKPCIERP--NPRPRLRMSLRFWRKSEKKRENGDGFG------HPDKLET 120

Query: 121 FSFLSSDCEFMASPRD---SMSSSSSSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKIH 180
            SF+SSD EFMASPRD   S+SSSSSSS PSSL+ESL VRNMGRVS GRP       +I+
Sbjct: 121 SSFMSSDGEFMASPRDSVSSLSSSSSSSLPSSLLESLNVRNMGRVSFGRP------WQIN 173

Query: 181 RILACYH 185
           R LACYH
Sbjct: 181 RFLACYH 173

[Close]

BLAST of Carg08376-RA vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 9   MKSKVIARTSSIGCSSRSTYYC-GAAEGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVIS 68
           MK       SSI  +S   YY     EGVPF+WE QPGTP +  P++++PPLSPPPA++S
Sbjct: 1   MKKDTCKEGSSISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLS 60

Query: 69  LGLPLP--CIEKPKTRPRPRPTMKLRFWRRVKKSR 101
           LGLP P   IE+PK    P   +KLR W+ +   R
Sbjct: 61  LGLPKPSISIEEPKNFVFP-TKLKLRNWKHLHCKR 94

[Close]

BLAST of Carg08376-RA vs. TAIR 10
Match: AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B )

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 9   MKSKVIARTSSIGCSSRSTYYC-GAAEGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVIS 68
           MK       SSI  +S   YY     EGVPF+WE QPGTP +  P++++PPLSPPPA++S
Sbjct: 1   MKKDTCKEGSSISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLS 60

Query: 69  LGLPLP--CIEKPKTRPRPRPTMKLRFWRRVKKSR 101
           LGLP P   IE+PK    P   +KLR W+ +   R
Sbjct: 61  LGLPKPSISIEEPKNFVFP-TKLKLRNWKHLHCKR 94

[Close]

BLAST of Carg08376-RA vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 5.1e-06
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 19  SIGCSS-RSTYYCGAAEGVPFKWETQPGTPKDPPPQ-DLLPPLSPPPAVIS 68
           S  C S R  YY GAA  VPF+WE+ PGTPK P  +   LPPL+PPP+  S
Sbjct: 57  SAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPSHFS 107

[Close]

BLAST of Carg08376-RA vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 52/148 (35.14%), Postives = 66/148 (44.59%), Query Frame = 0


Query: 9   MKSKVIARTSS-IGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQD--LLPPLSPPPAV 68
           + SK+I + SS +  SSR  YY GA+  VPF WET+PGTPK     +   LPPL+PPP+ 
Sbjct: 13  ISSKIIVKESSQVNSSSRIYYYGGAS--VPFLWETRPGTPKHALFSESLRLPPLTPPPSY 72

Query: 69  ISLGLPLPCIEKPKTRPRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLETFSFLS 128
            S                               S  G + ++A TI  +       S   
Sbjct: 73  YS-----------------------------SSSSSGNKLSKARTIKQTRFVKTLLSRHV 129

Query: 129 SDCEFMASPRDSMSSSS-SSSSPSSLIE 153
           S   F  S   S SSSS SSSSP S +E
Sbjct: 133 SRPSFSWSSASSSSSSSYSSSSPPSKVE 129

[Close]

BLAST of Carg08376-RA vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 42.7 bits (99), Expect = 3.6e-04
Identity = 43/154 (27.92%), Postives = 72/154 (46.75%), Query Frame = 0


Query: 25  RSTYYCGAAEGVPFKWETQPGTPKDPPPQD--LLPPLSPPPAVISLGLPLPCIEKPKTRP 84
           RS+YY GA+  +PF WE++PGTPK+    D  L  PL+PPP+  S G+      + K R 
Sbjct: 15  RSSYYGGAS--IPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILSTPRTQSKVRS 74

Query: 85  RPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSNDKLETFSFLSSDCEFMASPRDSMSSSS 144
           +    +    +  +++S  G +   +++  +S+         SS   F +SP  S+    
Sbjct: 75  KLSKFLSFSMFSDLRRSNHGSKKTASSSFSWSS--------TSSSSSFSSSPPHSLKKRM 134

Query: 145 SSSSPSSLIESLTVRNMGRVSLGRPSSCSTAGKI 177
           S    S L+ +    +  R S      CS  G++
Sbjct: 135 SHDKKSPLLYANYEEDELRSSPTSTLCCSNGGRL 158

The following BLAST results are available for this feature:

BLAST of Carg08376-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029810.1	2.0e-97	100.00	hypothetical protein SDJN02_08153, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022929606.1	1.0e-93	98.37	uncharacterized protein LOC111436141 [Cucurbita moschata]	[more]
XP_023546389.1	6.7e-93	97.28	uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo]	[more]
XP_022997465.1	4.0e-90	94.65	uncharacterized protein LOC111492375 [Cucurbita maxima]	[more]
KAG6598869.1	1.3e-88	94.54	hypothetical protein SDJN03_08647, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg08376-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08376-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ENL5	5.0e-94	98.37	uncharacterized protein LOC111436141 OS=Cucurbita moschata OX=3662 GN=LOC1114361...	[more]
A0A6J1K9Q8	2.0e-90	94.65	uncharacterized protein LOC111492375 OS=Cucurbita maxima OX=3661 GN=LOC111492375...	[more]
A0A5D3BQA0	5.4e-64	72.92	Putative OSBP(Oxysterol binding protein)-related protein 4B OS=Cucumis melo var....	[more]
A0A5A7UK88	2.0e-63	72.40	Putative OSBP(Oxysterol binding protein)-related protein 4B OS=Cucumis melo var....	[more]
A0A6J1DGF8	1.8e-59	70.05	uncharacterized protein LOC111020830 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Carg08376-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25845.1	3.6e-12	47.37	BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela...	[more]
AT4G25850.2	3.6e-12	47.37	OSBP(oxysterol binding protein)-related protein 4B	[more]
AT5G01790.1	5.1e-06	54.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G40475.1	1.2e-04	35.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G56260.2	3.6e-04	27.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..62
None	No IPR available	PANTHER	PTHR33257:SF6	OXYSTEROL-BINDING 4B-LIKE PROTEIN-RELATED	coord: 10..153
None	No IPR available	PANTHER	PTHR33257	OS05G0165500 PROTEIN	coord: 10..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg08376	Carg08376	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08376-RA:1	Carg08376-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08376-RA:cds	Carg08376-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg08376-RA	Carg08376-RA-protein	polypeptide