Carg08325-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08325-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 3417079 .. 3417609 (+)
Sequence length402
RNA-Seq ExpressionCarg08325-RA
SyntenyCarg08325-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCTCTCAAAACATCCCTTATGGAGCCAAGTTAGTTGTGTTGTTCATATTGCAAACTGCTTATGTATTTACCTTCTTAAGGTCTCTCTGCTATCATTTTCAGAACACTTTTGTCAGGGAAGGAAGCCATGAAATGGAGTGTGGGATACACTGCTTTCGGATTCACTGGACGATGCTACCGACGATCGAACGGAAAATTACGCTACAGGTTTTGGTTGAGCCCCAACCACAGAACTAGTCTTTAGTTTTACCTTCACGTACATTGGGTGGCTGTATATCATGTTCACAATATCAAGAACATTTGAATTTGCTGATTTCTCCTTTACATGATGTATAGAATGTTTACGGTAATGATGCACATTACAGTGTCCAAGTCTCTCTTTCTTCTGCTAGATTTCAGGAGGACCATTGCTTTGTAGTTGTTCTCGTCCCACCGACTGGACCTCCCGACATGGACGAAGATTTTCTATCAGGTGTGCTTCAACTTCAAGAGATTGAAATTATGTTTATGAATGCGATAATGTGA

mRNA sequence

ATGAAATTCTCTCAAAACATCCCTTATGGAGCCAAGTTAGTTGTGTTGTTCATATTGCAAACTGCTTATGTATTTACCTTCTTAAGGTCTCTCTGCTATCATTTTCAGAACACTTTTGTCAGGGAAGGAAGCCATGAAATGGAGTGTGGGATACACTGCTTTCGGATTCACTGGACGATGCTACCGACGATCGAACGGAAAATTACGCTACAGAATGTTTACGGTAATGATGCACATTACAGTGTCCAAGTCTCTCTTTCTTCTGCTAGATTTCAGGAGGACCATTGCTTTGTAGTTGTTCTCGTCCCACCGACTGGACCTCCCGACATGGACGAAGATTTTCTATCAGGTGTGCTTCAACTTCAAGAGATTGAAATTATGTTTATGAATGCGATAATGTGA

Coding sequence (CDS)

ATGAAATTCTCTCAAAACATCCCTTATGGAGCCAAGTTAGTTGTGTTGTTCATATTGCAAACTGCTTATGTATTTACCTTCTTAAGGTCTCTCTGCTATCATTTTCAGAACACTTTTGTCAGGGAAGGAAGCCATGAAATGGAGTGTGGGATACACTGCTTTCGGATTCACTGGACGATGCTACCGACGATCGAACGGAAAATTACGCTACAGAATGTTTACGGTAATGATGCACATTACAGTGTCCAAGTCTCTCTTTCTTCTGCTAGATTTCAGGAGGACCATTGCTTTGTAGTTGTTCTCGTCCCACCGACTGGACCTCCCGACATGGACGAAGATTTTCTATCAGGTGTGCTTCAACTTCAAGAGATTGAAATTATGTTTATGAATGCGATAATGTGA

Protein sequence

MKFSQNIPYGAKLVVLFILQTAYVFTFLRSLCYHFQNTFVREGSHEMECGIHCFRIHWTMLPTIERKITLQNVYGNDAHYSVQVSLSSARFQEDHCFVVVLVPPTGPPDMDEDFLSGVLQLQEIEIMFMNAIM
Homology
[Close]
BLAST of Carg08325-RA vs. NCBI nr
Match: KAG7029762.1 (hypothetical protein SDJN02_08104, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.9 bits (707), Expect = 8.8e-71
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MKFSQNIPYGAKLVVLFILQTAYVFTFLRSLCYHFQNTFVREGSHEMECGIHCFRIHWTM 60
           MKFSQNIPYGAKLVVLFILQTAYVFTFLRSLCYHFQNTFVREGSHEMECGIHCFRIHWTM
Sbjct: 1   MKFSQNIPYGAKLVVLFILQTAYVFTFLRSLCYHFQNTFVREGSHEMECGIHCFRIHWTM 60

Query: 61  LPTIERKITLQNVYGNDAHYSVQVSLSSARFQEDHCFVVVLVPPTGPPDMDEDFLSGVLQ 120
           LPTIERKITLQNVYGNDAHYSVQVSLSSARFQEDHCFVVVLVPPTGPPDMDEDFLSGVLQ
Sbjct: 61  LPTIERKITLQNVYGNDAHYSVQVSLSSARFQEDHCFVVVLVPPTGPPDMDEDFLSGVLQ 120

Query: 121 LQEIEIMFMNAIM 134
           LQEIEIMFMNAIM
Sbjct: 121 LQEIEIMFMNAIM 133

[Close]
BLAST of Carg08325-RA vs. NCBI nr
Match: KAG6598820.1 (Ubiquitin carboxyl-terminal hydrolase 26, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.4 bits (529), Expect = 3.9e-50
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 34   HFQNTFVREGSHEMECGIHCFRIHWTMLPTIERKITLQNVYGNDAHYSVQVSLSSARFQE 93
            HF NTFVREGSHEMECGIHCFRIHWTMLPTIERKITLQNVYGNDAHYSVQVSLSSARFQE
Sbjct: 1091 HFDNTFVREGSHEMECGIHCFRIHWTMLPTIERKITLQNVYGNDAHYSVQVSLSSARFQE 1150

Query: 94   DHCFVVVLVPPTGPPDMDEDFLSGVLQLQEIEIMFMNAIM 134
            DHCFVVVLVPPTGPPDMDEDFLSGVLQL+EIEIMFMNAI+
Sbjct: 1151 DHCFVVVLVPPTGPPDMDEDFLSGVLQLREIEIMFMNAII 1190

The following BLAST results are available for this feature:
BLAST of Carg08325-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029762.18.8e-71100.00hypothetical protein SDJN02_08104, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6598820.13.9e-5097.00Ubiquitin carboxyl-terminal hydrolase 26, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of Carg08325-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08325-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg08325-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg08325Carg08325gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg08325-RA:1Carg08325-RA:1exon
Carg08325-RA:2Carg08325-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg08325-RA:cdsCarg08325-RA:cdsCDS
Carg08325-RA:cdsCarg08325-RA:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg08325-RACarg08325-RA-proteinpolypeptide