Carg08113-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08113-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B-like cyclin
Location	Carg_Chr04: 2343838 .. 2344152 (-)
Sequence length	315
RNA-Seq Expression	Carg08113-RA
Synteny	Carg08113-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAAGCTGTCACCAACTAATGGAGGAGTACGTGATTGACACGTGTCCGTTAGGCCTCCGAAAACAACGGAATGAAGAAGCCGAGCAGCCGGCTCCCCCGAGTCCAGTCGGCGTGCTCGACGCGGCTGCATGTGGTAGCTGTGACACGCGCTTGGACAATCTCGGCTCTACTAGCCATGAACCCGCCGCTCCCTCAGCCGAACCTCAGACTAAACGGCTGCGATCCTCTGCGCCGGATGTACAGGATCAGTAGATAAGACCTTTGTGTCATTTGTTATAGGGAGGGTGAAAGAAAGAGAGCTTTTTATTT

mRNA sequence

ATGGTGAGAAGCTGTCACCAACTAATGGAGGAGTACGTGATTGACACGTGTCCGTTAGGCCTCCGAAAACAACGGAATGAAGAAGCCGAGCAGCCGGCTCCCCCGAGTCCAGTCGGCGTGCTCGACGCGGCTGCATGTGGTAGCTGTGACACGCGCTTGGACAATCTCGGCTCTACTAGCCATGAACCCGCCGCTCCCTCAGCCGAACCTCAGACTAAACGGCTGCGATCCTCTGCGCCGGATGTACAGGATCAGTAGATAAGACCTTTGTGTCATTTGTTATAGGGAGGGTGAAAGAAAGAGAGCTTTTTATTT

Coding sequence (CDS)

ATGGTGAGAAGCTGTCACCAACTAATGGAGGAGTACGTGATTGACACGTGTCCGTTAGGCCTCCGAAAACAACGGAATGAAGAAGCCGAGCAGCCGGCTCCCCCGAGTCCAGTCGGCGTGCTCGACGCGGCTGCATGTGGTAGCTGTGACACGCGCTTGGACAATCTCGGCTCTACTAGCCATGAACCCGCCGCTCCCTCAGCCGAACCTCAGACTAAACGGCTGCGATCCTCTGCGCCGGATGTACAGGATCAGTAG

Protein sequence

MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTSHEPAAPSAEPQTKRLRSSAPDVQDQ

Homology

[Close]

BLAST of Carg08113-RA vs. NCBI nr
Match: KAG7030937.1 (hypothetical protein SDJN02_04974, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 8.8e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
          MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS
Sbjct: 1  MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60

Query: 61 HEPAAPSAEPQTKRLRSSAPDVQDQ 86
          HEPAAPSAEPQTKRLRSSAPDVQDQ
Sbjct: 61 HEPAAPSAEPQTKRLRSSAPDVQDQ 85

[Close]

BLAST of Carg08113-RA vs. NCBI nr
Match: KAG6600278.1 (Cyclin-D1-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.3 bits (438), Expect = 8.8e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
           MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298

Query: 61  HEPAAPSAEPQTKRLRSSAPDVQDQ 86
           HEPAAPSAEPQTKRLRSSAPDVQDQ
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQDQ 323

[Close]

BLAST of Carg08113-RA vs. NCBI nr
Match: XP_023524819.1 (cyclin-D4-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 2.6e-39
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
           MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS
Sbjct: 210 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 269

Query: 61  HEPAAPSAEPQTKRLRSSAPDVQDQ 86
           HEPAAPSAEPQTKRLRSSAPDVQ+Q
Sbjct: 270 HEPAAPSAEPQTKRLRSSAPDVQEQ 294

[Close]

BLAST of Carg08113-RA vs. NCBI nr
Match: XP_022991967.1 (cyclin-D2-2-like [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 2.6e-39
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
           MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298

Query: 61  HEPAAPSAEPQTKRLRSSAPDVQDQ 86
           HEPAAPSAEPQTKRLRSSAPDVQ+Q
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323

[Close]

BLAST of Carg08113-RA vs. NCBI nr
Match: XP_023524811.1 (cyclin-D2-2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 2.6e-39
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
           MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298

Query: 61  HEPAAPSAEPQTKRLRSSAPDVQDQ 86
           HEPAAPSAEPQTKRLRSSAPDVQ+Q
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323

[Close]

BLAST of Carg08113-RA vs. ExPASy TrEMBL
Match: A0A6J1JNE1 (B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488456 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
           MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 298

Query: 61  HEPAAPSAEPQTKRLRSSAPDVQDQ 86
           HEPAAPSAEPQTKRLRSSAPDVQ+Q
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVQEQ 323

[Close]

BLAST of Carg08113-RA vs. ExPASy TrEMBL
Match: A0A6J1FQ05 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111447185 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.2e-38
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1   MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
           MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDT LDNLGSTS
Sbjct: 239 MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTHLDNLGSTS 298

Query: 61  HEPAAPSAEPQTKRLRSSAPDVQ 84
           HEPAAPSAEPQTKRLRSSAPDV+
Sbjct: 299 HEPAAPSAEPQTKRLRSSAPDVR 321

[Close]

BLAST of Carg08113-RA vs. ExPASy TrEMBL
Match: A0A6J1D6B2 (B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111017715 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 70/85 (82.35%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MVRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTS 60
           MVRSCHQLMEEYVIDTCP  LRKQR+ EAEQPAPPSPVGVLDAAACGSC    DN GSTS
Sbjct: 209 MVRSCHQLMEEYVIDTCPAALRKQRSGEAEQPAPPSPVGVLDAAACGSC----DNTGSTS 268

Query: 61  HEPAAPSAEPQTKRLRSSAPDVQDQ 86
           HE A   AEP TKRLRSSAPDVQ+Q
Sbjct: 269 HEAA---AEPPTKRLRSSAPDVQEQ 286

[Close]

BLAST of Carg08113-RA vs. ExPASy TrEMBL
Match: A0A5D3E1I4 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00440 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 2   VRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTSH 61
           V+SCHQLMEEYVIDTC   LRKQR    EQPAPPSPVGVLDAAACGSCDTRLD+ GSTSH
Sbjct: 211 VKSCHQLMEEYVIDTCTAELRKQRRIGEEQPAPPSPVGVLDAAACGSCDTRLDHPGSTSH 270

Query: 62  EPAAPSAEPQTKRLRSSAPDVQDQ 86
           EP  P+    +KR+RSSAPDVQ Q
Sbjct: 271 EP--PAEPSPSKRIRSSAPDVQHQ 292

[Close]

BLAST of Carg08113-RA vs. ExPASy TrEMBL
Match: A0A5A7TLD3 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00450 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 2   VRSCHQLMEEYVIDTCPLGLRKQRNEEAEQPAPPSPVGVLDAAACGSCDTRLDNLGSTSH 61
           V+SCHQLMEEYVIDTC   LRKQR    EQPAPPSPVGVLDAAACGSCDTRLD+ GSTSH
Sbjct: 211 VKSCHQLMEEYVIDTCTAELRKQRRIGEEQPAPPSPVGVLDAAACGSCDTRLDHPGSTSH 270

Query: 62  EPAAPSAEPQTKRLRSSAPDVQDQ 86
           EP  P+    +KR+RSSAPDVQ Q
Sbjct: 271 EP--PAEPSPSKRIRSSAPDVQHQ 292

The following BLAST results are available for this feature:

BLAST of Carg08113-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030937.1	8.8e-40	100.00	hypothetical protein SDJN02_04974, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600278.1	8.8e-40	100.00	Cyclin-D1-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023524819.1	2.6e-39	98.82	cyclin-D4-1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022991967.1	2.6e-39	98.82	cyclin-D2-2-like [Cucurbita maxima]	[more]
XP_023524811.1	2.6e-39	98.82	cyclin-D2-2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg08113-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08113-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNE1	1.2e-39	98.82	B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111488456 PE=3 SV=1	[more]
A0A6J1FQ05	5.2e-38	97.59	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111447185 PE=3 SV=1	[more]
A0A6J1D6B2	1.9e-27	82.35	B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111017715 PE=3 SV=1	[more]
A0A5D3E1I4	3.0e-25	76.19	B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00440 ...	[more]
A0A5A7TLD3	3.0e-25	76.19	B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00450 P...	[more]

BLAST of Carg08113-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg08113	Carg08113	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08113-RA:1	Carg08113-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08113-RA:three_prime_utr	Carg08113-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08113-RA:cds	Carg08113-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg08113-RA	Carg08113-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0044772	mitotic cell cycle phase transition
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity