Carg07969-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07969-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B-box zinc finger family protein
Location	Carg_Chr07: 1970360 .. 1971260 (+)
Sequence length	662
RNA-Seq Expression	Carg07969-RA
Synteny	Carg07969-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTATGGTCATCGGTCGGCATTATTTGTTATAACCTAAAGACTGCAGTGGCCGACACCAAGAACATCAGATATCAGGAACAGGGGGACGACCAAAATGAAATTTTGAAGGCACCCTTTTCAGGTTTTGATCGAGTTATGTGTTTTTTATGAAGTTTAGGAGGTGGGTTTTTGAGATTGATCGTAAAGTTTCCATCTTTTTAATGGTTTATGTTGTGAGTGGCAATGAGTGATCGGTTTTGATGAGGATACTTTGTGATTCCTGTGAAAATGCTGCAGCGACCTTGTTTTGTGCAGCTGATGAGGCTGCTCTTTGTGCAGCATGTGATGTCAAGGTATATATATATATGAAACCAAGTGCTTATATTACCTTTAGTTTTATGTCTTGTGATTTGGAAGGCTTTAGTTCACGTTGATGGGCAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTAGCAAGTCCGAGCGAAGTTTCCCGCTGTGATATATGTGAAAATGCACCAGGTATACATATAATCATGAAGTCTTTTGGTCTTGTTTTTGTTTGAGGGTTAACATTCTGAAGGAAAATGTTTGCAGCTTTCTTTTACTGTGAGATAGATGGAAGCTCCTTGTGCTTACAATGCGACGTGGTTGTTCATGTGGGAGGCAAGAGAATGCACAAGAGATATCTTCGGCTGGGGCAGAGAGTTGAGGTATTAATCCTACATGAAACCCTTAAATCTCTCAAGAACTTGGAACATATTTGATGTTGTTTGGTTAATTTTGCAGTTTCCTGGGGATAAACAACATGATCCAAAGGACTTGCAGAATCAAGATGGGGTTGATTCAAATGGAGATGGGCATTCCAAGCGGGGGAACGAAGTGATTGATTTGAACCTGTAG

mRNA sequence

TGTCTATGGTCATCGGTCGGCATTATTTGTTATAACCTAAAGACTGCAGTGGCCGACACCAAGAACATCAGATATCAGGAACAGGGGGACGACCAAAATGAAATTTTGAAGGCACCCTTTTCAGGTTTTGATCGAGTTATGTGTTTTTTATGAAGTTTAGGAGGTGGGTTTTTGAGATTGATCGTAAAGTTTCCATCTTTTTAATGGTTTATGTTGTGAGTGGCAATGAGTGATCGGTTTTGATGAGGATACTTTGTGATTCCTGTGAAAATGCTGCAGCGACCTTGTTTTGTGCAGCTGATGAGGCTGCTCTTTGTGCAGCATGTGATGTCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTAGCAAGTCCGAGCGAAGTTTCCCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGAAGCTCCTTGTGCTTACAATGCGACGTGGTTGTTCATGTGGGAGGCAAGAGAATGCACAAGAGATATCTTCGGCTGGGGCAGAGAGTTGAGTTTCCTGGGGATAAACAACATGATCCAAAGGACTTGCAGAATCAAGATGGGGTTGATTCAAATGGAGATGGGCATTCCAAGCGGGGGAACGAAGTGATTGATTTGAACCTGTAG

Coding sequence (CDS)

ATGAGGATACTTTGTGATTCCTGTGAAAATGCTGCAGCGACCTTGTTTTGTGCAGCTGATGAGGCTGCTCTTTGTGCAGCATGTGATGTCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTAGCAAGTCCGAGCGAAGTTTCCCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGAAGCTCCTTGTGCTTACAATGCGACGTGGTTGTTCATGTGGGAGGCAAGAGAATGCACAAGAGATATCTTCGGCTGGGGCAGAGAGTTGAGTTTCCTGGGGATAAACAACATGATCCAAAGGACTTGCAGAATCAAGATGGGGTTGATTCAAATGGAGATGGGCATTCCAAGCGGGGGAACGAAGTGATTGATTTGAACCTGTAG

Protein sequence

MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDLQNQDGVDSNGDGHSKRGNEVIDLNL

Homology

[Close]

BLAST of Carg07969-RA vs. NCBI nr
Match: KAG7026753.1 (B-box zinc finger protein 19 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 5.2e-74
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE
Sbjct: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDLQNQDGV 120
           NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDLQNQDGV
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDLQNQDGV 120

Query: 121 DSNGDGHSKRGNEVIDLNL 140
           DSNGDGHSKRGNEVIDLNL
Sbjct: 121 DSNGDGHSKRGNEVIDLNL 139

[Close]

BLAST of Carg07969-RA vs. NCBI nr
Match: XP_023517413.1 (B-box zinc finger protein 19-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 7.8e-70
Identity = 136/152 (89.47%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE
Sbjct: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDV+VHVGGKRMHKRYLRLGQRVEFPGDKQ+DPKDL      
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVLVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDLNVQAME 120

Query: 121 -------QNQDGVDSNGDGHSKRGNEVIDLNL 140
                  QNQDGVDSNGDGHSKRGNEVIDLN+
Sbjct: 121 QAETVRGQNQDGVDSNGDGHSKRGNEVIDLNM 152

[Close]

BLAST of Carg07969-RA vs. NCBI nr
Match: XP_023003940.1 (B-box zinc finger protein 19-like [Cucurbita maxima])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 135/152 (88.82%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE
Sbjct: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQ+DPKD+      
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDMNVQAME 120

Query: 121 -------QNQDGVDSNGDGHSKRGNEVIDLNL 140
                  QNQDGVDSNGDGHSKRGN+VIDLN+
Sbjct: 121 QAETVRGQNQDGVDSNGDGHSKRGNQVIDLNM 152

[Close]

BLAST of Carg07969-RA vs. NCBI nr
Match: XP_022963232.1 (B-box zinc finger protein 19-like [Cucurbita moschata])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 136/152 (89.47%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVS CDICE
Sbjct: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSCCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQ+DPKDL      
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDLNVQAME 120

Query: 121 -------QNQDGVDSNGDGHSKRGNEVIDLNL 140
                  QNQDGVDSNGDGHSKRGNEVIDLN+
Sbjct: 121 QVETVRGQNQDGVDSNGDGHSKRGNEVIDLNM 152

[Close]

BLAST of Carg07969-RA vs. NCBI nr
Match: XP_023517412.1 (B-box zinc finger protein 18-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 124/141 (87.94%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 12  AATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEID 71
           +ATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEID
Sbjct: 58  SATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEID 117

Query: 72  GSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL-------------QNQD 131
           GSSLCLQCDV+VHVGGKRMHKRYLRLGQRVEFPGDKQ+DPKDL             QNQD
Sbjct: 118 GSSLCLQCDVLVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDLNVQAMEQAETVRGQNQD 177

Query: 132 GVDSNGDGHSKRGNEVIDLNL 140
           GVDSNGDGHSKRGNEVIDLN+
Sbjct: 178 GVDSNGDGHSKRGNEVIDLNM 198

[Close]

BLAST of Carg07969-RA vs. ExPASy Swiss-Prot
Match: C0SVM5 (B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-50
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCD+CENAAA +FCAADEAALC  CD KVHMCNKLASRHVRVGLA PS    CDICE
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGD--KQHDPKD-LQNQ 120
           NAPAFFYCEIDGSSLCLQCD+VVHVGGKR H R+L L QR+EFPGD  K+++ +D LQNQ
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKPKENNTRDNLQNQ 120

Query: 121 D-GVDSNGDGHSKRGNEVIDLN 139
               + NG+ + K  +E+IDLN
Sbjct: 121 RVSTNGNGEANGKIDDEMIDLN 142

[Close]

BLAST of Carg07969-RA vs. ExPASy Swiss-Prot
Match: Q9SJU5 (B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 6.7e-48
Identity = 96/143 (67.13%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCD+CE+AAA +FCAADEAALC +CD KVH CNKLASRH+RVGLA PS    CDICE
Sbjct: 1   MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDLQNQDGV 120
           NAPAFFYCEIDGSSLCLQCD+VVHVGGKR H+R+L L QR+EFPGDK +    L  +   
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHADQLGLRCQK 120

Query: 121 DSNGDGHSKRGN-----EVIDLN 139
            S+G G    GN      +IDLN
Sbjct: 121 ASSGRGQESNGNGDHDHNMIDLN 143

[Close]

BLAST of Carg07969-RA vs. ExPASy Swiss-Prot
Match: Q9SYM2 (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGL-ASPSEVSRCDIC 60
           M+I C+ CE A AT+ C ADEAALC ACD K+H  NKLA +H RV L AS S + +CDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDVVVHVGGKRM--HKRYLRLGQRV 102
           + A  FF+C  D + LC +CDV +H     +  H+R+L  G +V
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104

[Close]

BLAST of Carg07969-RA vs. ExPASy Swiss-Prot
Match: Q96288 (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-21
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPS-EVSRCDIC 60
           M+I CD CE A AT+ C ADEAALC  CD+++H  NKLAS+H R+ L S S +  RCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDVVVHVGGKRM--HKRYLRLGQRV 102
           +   AF +C  D + LC  CD  +HV   R   H+R+L  G +V
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKV 104

[Close]

BLAST of Carg07969-RA vs. ExPASy Swiss-Prot
Match: Q9SID1 (B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 59/127 (46.46%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPS-EVSRCDIC 60
           M+I CD CE A ATL C ADEAALCA CDV+VH  NKLAS+H R+ L S S +   CDIC
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDVVVHVGGKRM--HKRYLRLGQRVEFPG-------DKQH- 117
               AF +C  D + LC  CD   H    R   H+R+L  G RV           +K H 
Sbjct: 61  LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

[Close]

BLAST of Carg07969-RA vs. ExPASy TrEMBL
Match: A0A6J1KT68 (B-box zinc finger protein 19-like OS=Cucurbita maxima OX=3661 GN=LOC111497383 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.5e-70
Identity = 135/152 (88.82%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE
Sbjct: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQ+DPKD+      
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDMNVQAME 120

Query: 121 -------QNQDGVDSNGDGHSKRGNEVIDLNL 140
                  QNQDGVDSNGDGHSKRGN+VIDLN+
Sbjct: 121 QAETVRGQNQDGVDSNGDGHSKRGNQVIDLNM 152

[Close]

BLAST of Carg07969-RA vs. ExPASy TrEMBL
Match: A0A6J1HEQ5 (B-box zinc finger protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC111463506 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 136/152 (89.47%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVS CDICE
Sbjct: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSCCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQ+DPKDL      
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDLNVQAME 120

Query: 121 -------QNQDGVDSNGDGHSKRGNEVIDLNL 140
                  QNQDGVDSNGDGHSKRGNEVIDLN+
Sbjct: 121 QVETVRGQNQDGVDSNGDGHSKRGNEVIDLNM 152

[Close]

BLAST of Carg07969-RA vs. ExPASy TrEMBL
Match: A0A0A0KJB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505230 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.4e-58
Identity = 123/168 (73.21%), Postives = 131/168 (77.98%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCE+A ATLFCAADEAALCA CD KVHMCNKLASRHVRVGLA+PSEV RCDICE
Sbjct: 1   MRILCDSCESAPATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDV+VHVGGKRMHKRYLRL QRVEFPGDKQ+D KDL      
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDVKDLNVKPTE 120

Query: 121 -------QNQD-------------GVD---SNGDGHSKRGNEVIDLNL 140
                  QN++             GV    SNGDGHSKR N+VIDLN+
Sbjct: 121 QVEKVKSQNEERGENEKHEELRVSGVTKDYSNGDGHSKRPNKVIDLNM 168

[Close]

BLAST of Carg07969-RA vs. ExPASy TrEMBL
Match: A0A5A7SKM7 (B-box zinc finger protein 19-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001490 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.7e-58
Identity = 122/168 (72.62%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCE+AAATLFCAADEAALCA CD KVHMCNKLASRHVRVGLA+PSEV RCDICE
Sbjct: 1   MRILCDSCESAAATLFCAADEAALCAVCDTKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDV+VHVGGKRMHKRYLRL QRVEFPGDK++D KD       
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKRNDGKDQNVKPME 120

Query: 121 -------QNQD-------------GVD---SNGDGHSKRGNEVIDLNL 140
                  QN++             GV+   SNGDGHSKR N+VIDLN+
Sbjct: 121 QVEKVKGQNEERGEIEKHEELRVSGVEKDYSNGDGHSKRPNKVIDLNM 168

[Close]

BLAST of Carg07969-RA vs. ExPASy TrEMBL
Match: A0A1S3B2K6 (B-box zinc finger protein 19-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485108 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.7e-58
Identity = 122/168 (72.62%), Postives = 132/168 (78.57%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCDSCE+AAATLFCAADEAALCA CD KVHMCNKLASRHVRVGLA+PSEV RCDICE
Sbjct: 1   MRILCDSCESAAATLFCAADEAALCAVCDTKVHMCNKLASRHVRVGLANPSEVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDL------ 120
           NAPAFFYCEIDGSSLCLQCDV+VHVGGKRMHKRYLRL QRVEFPGDK++D KD       
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKRNDGKDQNVKPME 120

Query: 121 -------QNQD-------------GVD---SNGDGHSKRGNEVIDLNL 140
                  QN++             GV+   SNGDGHSKR N+VIDLN+
Sbjct: 121 QVEKVKGQNEERGEIEKHEELRVSGVEKDYSNGDGHSKRPNKVIDLNM 168

[Close]

BLAST of Carg07969-RA vs. TAIR 10
Match: AT4G38960.1 (B-box type zinc finger family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-51
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCD+CENAAA +FCAADEAALC  CD KVHMCNKLASRHVRVGLA PS    CDICE
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGD--KQHDPKD-LQNQ 120
           NAPAFFYCEIDGSSLCLQCD+VVHVGGKR H R+L L QR+EFPGD  K+++ +D LQNQ
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKPKENNTRDNLQNQ 120

Query: 121 D-GVDSNGDGHSKRGNEVIDLN 139
               + NG+ + K  +E+IDLN
Sbjct: 121 RVSTNGNGEANGKIDDEMIDLN 142

[Close]

BLAST of Carg07969-RA vs. TAIR 10
Match: AT2G21320.1 (B-box zinc finger family protein )

HSP 1 Score: 191.4 bits (485), Expect = 4.8e-49
Identity = 96/143 (67.13%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICE 60
           MRILCD+CE+AAA +FCAADEAALC +CD KVH CNKLASRH+RVGLA PS    CDICE
Sbjct: 1   MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKRYLRLGQRVEFPGDKQHDPKDLQNQDGV 120
           NAPAFFYCEIDGSSLCLQCD+VVHVGGKR H+R+L L QR+EFPGDK +    L  +   
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHADQLGLRCQK 120

Query: 121 DSNGDGHSKRGN-----EVIDLN 139
            S+G G    GN      +IDLN
Sbjct: 121 ASSGRGQESNGNGDHDHNMIDLN 143

[Close]

BLAST of Carg07969-RA vs. TAIR 10
Match: AT4G38960.3 (B-box type zinc finger family protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-45
Identity = 102/185 (55.14%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVK----------------------------- 60
           MRILCD+CENAAA +FCAADEAALC  CD K                             
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKALHMRLDISKCSESVKRVQIVETSSLIWW 60

Query: 61  --------------VHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEIDGSSLCL 120
                         VHMCNKLASRHVRVGLA PS    CDICENAPAFFYCEIDGSSLCL
Sbjct: 61  IKMGTFCLQSLHLVVHMCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCL 120

Query: 121 QCDVVVHVGGKRMHKRYLRLGQRVEFPGD--KQHDPKD-LQNQD-GVDSNGDGHSKRGNE 139
           QCD+VVHVGGKR H R+L L QR+EFPGD  K+++ +D LQNQ    + NG+ + K  +E
Sbjct: 121 QCDMVVHVGGKRTHGRFLLLRQRIEFPGDKPKENNTRDNLQNQRVSTNGNGEANGKIDDE 180

[Close]

BLAST of Carg07969-RA vs. TAIR 10
Match: AT4G38960.2 (B-box type zinc finger family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-35
Identity = 75/109 (68.81%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 34  MCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVVVHVGGKRMHKR 93
           MCNKLASRHVRVGLA PS    CDICENAPAFFYCEIDGSSLCLQCD+VVHVGGKR H R
Sbjct: 1   MCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGR 60

Query: 94  YLRLGQRVEFPGD--KQHDPKD-LQNQD-GVDSNGDGHSKRGNEVIDLN 139
           +L L QR+EFPGD  K+++ +D LQNQ    + NG+ + K  +E+IDLN
Sbjct: 61  FLLLRQRIEFPGDKPKENNTRDNLQNQRVSTNGNGEANGKIDDEMIDLN 109

[Close]

BLAST of Carg07969-RA vs. TAIR 10
Match: AT1G78600.1 (light-regulated zinc finger protein 1 )

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-22
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGL-ASPSEVSRCDIC 60
           M+I C+ CE A AT+ C ADEAALC ACD K+H  NKLA +H RV L AS S + +CDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDVVVHVGGKRM--HKRYLRLGQRV 102
           + A  FF+C  D + LC +CDV +H     +  H+R+L  G +V
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104

The following BLAST results are available for this feature:

BLAST of Carg07969-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026753.1	5.2e-74	100.00	B-box zinc finger protein 19 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023517413.1	7.8e-70	89.47	B-box zinc finger protein 19-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023003940.1	1.3e-69	88.82	B-box zinc finger protein 19-like [Cucurbita maxima]	[more]
XP_022963232.1	3.0e-69	89.47	B-box zinc finger protein 19-like [Cucurbita moschata]	[more]
XP_023517412.1	1.2e-62	87.94	B-box zinc finger protein 18-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg07969-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0SVM5	1.9e-50	71.83	B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1	[more]
Q9SJU5	6.7e-48	67.13	B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2	[more]
Q9SYM2	1.8e-21	50.00	B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2	[more]
Q96288	7.0e-21	49.04	B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1	[more]
Q9SID1	1.7e-19	46.46	B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2	[more]

BLAST of Carg07969-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KT68	6.5e-70	88.82	B-box zinc finger protein 19-like OS=Cucurbita maxima OX=3661 GN=LOC111497383 PE...	[more]
A0A6J1HEQ5	1.4e-69	89.47	B-box zinc finger protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC111463506 ...	[more]
A0A0A0KJB1	7.4e-58	73.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505230 PE=4 SV=1	[more]
A0A5A7SKM7	9.7e-58	72.62	B-box zinc finger protein 19-like isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3B2K6	9.7e-58	72.62	B-box zinc finger protein 19-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]

BLAST of Carg07969-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38960.1	1.3e-51	71.83	B-box type zinc finger family protein	[more]
AT2G21320.1	4.8e-49	67.13	B-box zinc finger family protein	[more]
AT4G38960.3	2.4e-45	55.14	B-box type zinc finger family protein	[more]
AT4G38960.2	1.8e-35	68.81	B-box type zinc finger family protein	[more]
AT1G78600.1	1.3e-22	50.00	light-regulated zinc finger protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 51..96 e-value: 7.7E-10 score: 48.7 coord: 4..47 e-value: 7.8E-7 score: 38.7
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 52..85 e-value: 1.1E-6 score: 28.7 coord: 4..41 e-value: 9.3E-7 score: 28.9
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 51..97 score: 8.915803
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 1..47 score: 10.494711
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..93 e-value: 6.9E-7 score: 31.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..139
None	No IPR available	PANTHER	PTHR31832:SF5	B-BOX ZINC FINGER PROTEIN 19	coord: 1..119
None	No IPR available	PANTHER	PTHR31832	B-BOX ZINC FINGER PROTEIN 22	coord: 1..119
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 56..95 e-value: 8.974E-10 score: 49.2183

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg07969	Carg07969	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07969-RA:1	Carg07969-RA:1	exon
Carg07969-RA:2	Carg07969-RA:2	exon
Carg07969-RA:3	Carg07969-RA:3	exon
Carg07969-RA:4	Carg07969-RA:4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07969-RA:five_prime_utr	Carg07969-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07969-RA:cds	Carg07969-RA:cds	CDS
Carg07969-RA:cds	Carg07969-RA:cds_2	CDS
Carg07969-RA:cds	Carg07969-RA:cds_3	CDS
Carg07969-RA:cds	Carg07969-RA:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg07969-RA	Carg07969-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009640	photomorphogenesis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding