Carg07768-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07768-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 1084066 .. 1085958 (+)
Sequence length246
RNA-Seq ExpressionCarg07768-RA
SyntenyCarg07768-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAATGCTGCTATTGAGCAGGACTTACCTAAGGTAATCAATTCTAGGTTAGCATCCAAGTCTTCCTCCTATAACTAAAAGAATCATTATAAAGTATGATACAAACGTTCACAACATTGAAATTTTAATGTGGCATGCACAAATGGATCCAATAGATTACAGAGTGCAGTTGAAATGAGTCATAGTGCTAGGAGAATTCAAAGGGGAATAGGTTTTGGGTTTGTAAAACATATAGATGGTCCTAAGCTGGTAACTTCTTGAAACATAATTTCATGTAGCTAGTTTACAGGTATCTTGAACTATATCAAAGAATGGGTGTACATTTTTAGAAATGAATTTATTGGGCCTTTAGCTGTTCCTATGACCGATACCTTGTGGCCATTACTTTTCATGATGGTCTTTATATTCATTGAAATATGCTGCCAGCCTCCCTTTAGTTCCATCCCCATCTTCAATCTCATTGTCTAAAGTAGGTTTCATACAATTTCAACAATGTAACCTTGCATCCATCGTCGATCTTTTCCCCCTTGTATATCTAATTCAACATGTTTCTTTCTCTAGGATCGTGAGAGATTGCTCATTGCTGAACTTAGCGACTTACTCGTTTCCAAGCAGGAGGATAACTATGTACATGTTTGTTCATCATGATGTTTTAGGTATAAAAATTGAAGTTTAGAATAGTTGGCTGTGCAGTTTCTTAGACAATGTTTATAATCTATCTACATTTCCCCTTTTTGCTGTAATGTAGGTGGATGATTACTGTGTGTTGAGATGCAGTTCATCGATCATAGTAACTGTAAGATTTTTTTTTATTATTTATTTATTTATTATTAAGATGATACGTAACTTTGGTGGCCCTCTATTTTGAGTATTTAAGAGCTAAAAATAGAAAATTGTAAAAGCTGTTAATGATGATCTATTTTTGTCATTCTAAAAATAGAAATCAGTCTTAGTTTGATTTTTATTTTTGGAACAAATTTTTTTTTTATTATTGTTCGTAATTTTTAGAACAATGAAAAAGAAAAGTCGACTAAGATTTAACGTAGAAAATACTTTTTAATGGTTAAAAGCGGAGGACCTCTCACTTGGAGAAAGATAAGCAGTATCTAAATTAATTGAATTTTATTTAATTAAGGAAGTACGATTCAATTTCTTTACTCAGTTCTCTAAAAAAAAAAAAATTATAAAAACGCTTTTTTTTATTTCTTTCGTCAAGCCCCTGTACTTCTAAAATATTTACAACTTTAAAAAAATAATTAATATAGGTGAATTTATGGCAAATTGTTAAAGTATCTAATTTTATTTGAAGTGGGGATTCACTGAATCGGTTGAAAAAGATAATTAATCCTTAATCCTTCCTCATAAGAGTAAGGAACAATATCGATTTTTGTGAGTTCGAGCGGTTACAAGCGTATAGACTAAAATGAAATATATTTACTAGTGGACGAATAATATTTATTAGCTGTGAGTTTGAGCAGTTATAAACTCTAATTGGCTTACACAATATCTACTAGCTTGTTATAGCTTGTTATAAGCCCCATAGAAGCCATGCTAATTGGCTGACACAATAGCTTCTCAGGTAATCTACTGATTTGTAATAGATAATTGACACCATTAGGTAACGGACACAATATCTATTATTTACTGATTTGTAATAGTGACCCAATATCTACTTATCATAGGTAACTGACCCAATATCTACTTATCATAGGTAACTGACCCAATATCGATGAGTCCCATGGTGGGGTGGGAAGAGTTGGTGGCCAGAAATGGTTTGATGGTTTGATTTCATAAACGCAGAGCCTTAGGCTTAGGCCTTACCTTACGTTAACCCCTCAACTTCAAATCCAATCTGAGGAGGAAAAGGTCAAATCGATTCCACCGAACTAA

mRNA sequence

ATGATGAATGCTGCTATTGAGCAGGACTTACCTAAGGATCGTGAGAGATTGCTCATTGCTGAACTTAGCGACTTACTCGTTTCCAAGCAGGAGGATAACTATGTACATGTGGATGATTACTGTGTGTTGAGATGCAGTTCATCGATCATAGTAACTAGCCTTAGGCTTAGGCCTTACCTTACGTTAACCCCTCAACTTCAAATCCAATCTGAGGAGGAAAAGGTCAAATCGATTCCACCGAACTAA

Coding sequence (CDS)

ATGATGAATGCTGCTATTGAGCAGGACTTACCTAAGGATCGTGAGAGATTGCTCATTGCTGAACTTAGCGACTTACTCGTTTCCAAGCAGGAGGATAACTATGTACATGTGGATGATTACTGTGTGTTGAGATGCAGTTCATCGATCATAGTAACTAGCCTTAGGCTTAGGCCTTACCTTACGTTAACCCCTCAACTTCAAATCCAATCTGAGGAGGAAAAGGTCAAATCGATTCCACCGAACTAA

Protein sequence

MMNAAIEQDLPKDRERLLIAELSDLLVSKQEDNYVHVDDYCVLRCSSSIIVTSLRLRPYLTLTPQLQIQSEEEKVKSIPPN
Homology
[Close]
BLAST of Carg07768-RA vs. NCBI nr
Match: KAG7026559.1 (hypothetical protein SDJN02_10561, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MMNAAIEQDLPKDRERLLIAELSDLLVSKQEDNYVHVDDYCVLRCSSSIIVTSLRLRPYL 60
          MMNAAIEQDLPKDRERLLIAELSDLLVSKQEDNYVHVDDYCVLRCSSSIIVTSLRLRPYL
Sbjct: 1  MMNAAIEQDLPKDRERLLIAELSDLLVSKQEDNYVHVDDYCVLRCSSSIIVTSLRLRPYL 60

Query: 61 TLTPQLQIQSEEEKVKSIPPN 82
          TLTPQLQIQSEEEKVKSIPPN
Sbjct: 61 TLTPQLQIQSEEEKVKSIPPN 81

The following BLAST results are available for this feature:
BLAST of Carg07768-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026559.12.1e-35100.00hypothetical protein SDJN02_10561, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg07768-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07768-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07768-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg07768Carg07768gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg07768-RA:1Carg07768-RA:1exon
Carg07768-RA:2Carg07768-RA:2exon
Carg07768-RA:3Carg07768-RA:3exon
Carg07768-RA:4Carg07768-RA:4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg07768-RA:cdsCarg07768-RA:cdsCDS
Carg07768-RA:cdsCarg07768-RA:cds_2CDS
Carg07768-RA:cdsCarg07768-RA:cds_3CDS
Carg07768-RA:cdsCarg07768-RA:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg07768-RACarg07768-RA-proteinpolypeptide