Carg06733-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCACAACAACTCTAGTCATTCCGCTCTTCCTCTATCTCGTCCTCTCATCTTTTCTCCTATCCATTTCCACCGCCAACATCCACTCCAACAGTTGCCGATCCTTCTGCGGCAACATCACAATCGACTATCCCTTCGCTCTCCAGTACGGCTGCGGCCATCCTGGCTACCGCGACCTTCTCTACTGCATGAACGACGTTTTAATGTTCCACATCCGATCCGGATCCTACAGAGTCCTAGACATCGATTACGCTTACGAAGCCCTAACTCTCCACGACCCTCACATGTCGAACTGCGACACAATCGTCCTCGGCCGCCGCGGCAACGGCTTCGACATCGAGGAATGGCGATCGCCGTACCTGAATCCGACGGCCGATAACGCGTTCCTCCTCATCGGTTGCTCCGCCCAATCGCCACTCTTCCAAGGGTTCCCGAACAAGCACCTAGTCTGTAGAAACGTTTCCGGACTGGGCTGTGAGGAGTATTATGACTGTCCGGCTTGGGGTATATTGGGCCACAGACGACCGGGCCGAAATTATGGGCCCGGCCCACCAGAGTGCTGTGCGGTTCCTTTTGGGTCCATTAAGGCCGTAAATCTCACTAAGCTTCAGTGTGAAGGCTATAGCAGTGCTTATAACTTGGCCCCGTTGAGGCTTAATGGGCCTGATCAATGGGCCTATGGGATTCGTGTGAAATATTCAGTCCAAGCAAACGAAGACTTTTGCCGCGCGTGCCAAGCCACTGGCGGCACGTGTGGGTTTGGTACGGATGGTGTTAGACAGCTGTGCATGTGTGGTAGTTCCAATTCTTCCTCCACTTGTGATTTTGGTAAGTCAGGGGCAATTTCGTAATATATATATATATTTCGTGTTTAATAAATTTTATATTTAATAAATTCTTAAAAATGTTATTTTTTAAATTAATTGATCAATTATATTAAATTTAAATTTTATAACTACGGGTAAAACTGTGAATTATAATTCTCCTCGATGAATATGATTTGTTCGAGTGTTCTTTGCAAAATTAAATGCAAAATTTTAAAATTTTGCACCTAAAGTATAGTTTTTTCTCGTTCTTGCTTCGTTTTTTAACCTACTTAATTTAACCAGTACCCGAATTATTTTAATTATATCAAATTATATTTACGTAATTTGCAGTTATGCCCTCATTATCGACAAGGATGACATCATGGACACTAATCAAAGCCATATTAGCAGGTAAATATATGGTTCAATACATACATACATACATGTGTATACATACATACACGTGTATATACATATATACACGTGTATATACATATATACATATGTATGTATATATATGATGATTTGTATAATGATGATTTATTTGTAAATATAATTGTAGGAAGCTTGATGGTGATGTTAGAGTAGACAAAGAGGAGCCAATTATGAAGTGGGAGATTGGTTGTGTTTTGGAGCTGCTCCAAGGAAATTGGAATTAGTTCATAAATTTTGAGCAATTTTATAGATTTAATGCATTAGGAGTAGAATATCACAAGCTTTTGTATTGTTTTTGTTGCGAAAACATGAGTGAATCTGTACATGTGTACACTAACGTTTTTTTTTAACAGAATCTAACGAAG ATGTCCACAACAACTCTAGTCATTCCGCTCTTCCTCTATCTCGTCCTCTCATCTTTTCTCCTATCCATTTCCACCGCCAACATCCACTCCAACAGTTGCCGATCCTTCTGCGGCAACATCACAATCGACTATCCCTTCGCTCTCCAGTACGGCTGCGGCCATCCTGGCTACCGCGACCTTCTCTACTGCATGAACGACGTTTTAATGTTCCACATCCGATCCGGATCCTACAGAGTCCTAGACATCGATTACGCTTACGAAGCCCTAACTCTCCACGACCCTCACATGTCGAACTGCGACACAATCGTCCTCGGCCGCCGCGGCAACGGCTTCGACATCGAGGAATGGCGATCGCCGTACCTGAATCCGACGGCCGATAACGCGTTCCTCCTCATCGGTTGCTCCGCCCAATCGCCACTCTTCCAAGGGTTCCCGAACAAGCACCTAGTCTGTAGAAACGTTTCCGGACTGGGCTGTGAGGAGTATTATGACTGTCCGGCTTGGGGTATATTGGGCCACAGACGACCGGGCCGAAATTATGGGCCCGGCCCACCAGAGTGCTGTGCGGTTCCTTTTGGGTCCATTAAGGCCGTAAATCTCACTAAGCTTCAGTGTGAAGGCTATAGCAGTGCTTATAACTTGGCCCCGTTGAGGCTTAATGGGCCTGATCAATGGGCCTATGGGATTCGTGTGAAATATTCAGTCCAAGCAAACGAAGACTTTTGCCGCGCGTGCCAAGCCACTGGCGGCACGTGTGGGTTTGGTACGGATGGTGTTAGACAGCTGTGCATGTGTGGTAGTTCCAATTCTTCCTCCACTTGTGATTTTGGTAAGTCAGGGGCAATTTCTTATGCCCTCATTATCGACAAGGATGACATCATGGACACTAATCAAAGCCATATTAGCAGGAAGCTTGATGGTGATGTTAGAGTAGACAAAGAGGAGCCAATTATGAAGTGGGAGATTGGTTGTGTTTTGGAGCTGCTCCAAGGAAATTGGAATTAGTTCATAAATTTTGAGCAATTTTATAGATTTAATGCATTAGGAGTAGAATATCACAAGCTTTTGTATTGTTTTTGTTGCGAAAACATGAGTGAATCTGTACATGTGTACACTAACGTTTTTTTTTAACAGAATCTAACGAAG ATGTCCACAACAACTCTAGTCATTCCGCTCTTCCTCTATCTCGTCCTCTCATCTTTTCTCCTATCCATTTCCACCGCCAACATCCACTCCAACAGTTGCCGATCCTTCTGCGGCAACATCACAATCGACTATCCCTTCGCTCTCCAGTACGGCTGCGGCCATCCTGGCTACCGCGACCTTCTCTACTGCATGAACGACGTTTTAATGTTCCACATCCGATCCGGATCCTACAGAGTCCTAGACATCGATTACGCTTACGAAGCCCTAACTCTCCACGACCCTCACATGTCGAACTGCGACACAATCGTCCTCGGCCGCCGCGGCAACGGCTTCGACATCGAGGAATGGCGATCGCCGTACCTGAATCCGACGGCCGATAACGCGTTCCTCCTCATCGGTTGCTCCGCCCAATCGCCACTCTTCCAAGGGTTCCCGAACAAGCACCTAGTCTGTAGAAACGTTTCCGGACTGGGCTGTGAGGAGTATTATGACTGTCCGGCTTGGGGTATATTGGGCCACAGACGACCGGGCCGAAATTATGGGCCCGGCCCACCAGAGTGCTGTGCGGTTCCTTTTGGGTCCATTAAGGCCGTAAATCTCACTAAGCTTCAGTGTGAAGGCTATAGCAGTGCTTATAACTTGGCCCCGTTGAGGCTTAATGGGCCTGATCAATGGGCCTATGGGATTCGTGTGAAATATTCAGTCCAAGCAAACGAAGACTTTTGCCGCGCGTGCCAAGCCACTGGCGGCACGTGTGGGTTTGGTACGGATGGTGTTAGACAGCTGTGCATGTGTGGTAGTTCCAATTCTTCCTCCACTTGTGATTTTGGTAAGTCAGGGGCAATTTCTTATGCCCTCATTATCGACAAGGATGACATCATGGACACTAATCAAAGCCATATTAGCAGGAAGCTTGATGGTGATGTTAGAGTAGACAAAGAGGAGCCAATTATGAAGTGGGAGATTGGTTGTGTTTTGGAGCTGCTCCAAGGAAATTGGAATTAG MSTTTLVIPLFLYLVLSSFLLSISTANIHSNSCRSFCGNITIDYPFALQYGCGHPGYRDLLYCMNDVLMFHIRSGSYRVLDIDYAYEALTLHDPHMSNCDTIVLGRRGNGFDIEEWRSPYLNPTADNAFLLIGCSAQSPLFQGFPNKHLVCRNVSGLGCEEYYDCPAWGILGHRRPGRNYGPGPPECCAVPFGSIKAVNLTKLQCEGYSSAYNLAPLRLNGPDQWAYGIRVKYSVQANEDFCRACQATGGTCGFGTDGVRQLCMCGSSNSSSTCDFGKSGAISYALIIDKDDIMDTNQSHISRKLDGDVRVDKEEPIMKWEIGCVLELLQGNWN Homology
BLAST of Carg06733-RA vs. NCBI nr
Match: KAG7012253.1 (hypothetical protein SDJN02_25005, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 716.5 bits (1848), Expect = 1.1e-202 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
BLAST of Carg06733-RA vs. NCBI nr
Match: XP_022954591.1 (uncharacterized protein LOC111456814 [Cucurbita moschata]) HSP 1 Score: 597.4 bits (1539), Expect = 7.4e-167 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
BLAST of Carg06733-RA vs. NCBI nr
Match: KAG6573066.1 (hypothetical protein SDJN03_26953, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 597.4 bits (1539), Expect = 7.4e-167 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
BLAST of Carg06733-RA vs. NCBI nr
Match: XP_023542539.1 (uncharacterized protein LOC111802420 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 594.7 bits (1532), Expect = 4.8e-166 Identity = 274/276 (99.28%), Postives = 275/276 (99.64%), Query Frame = 0
BLAST of Carg06733-RA vs. NCBI nr
Match: XP_022994636.1 (uncharacterized protein LOC111490288 [Cucurbita maxima]) HSP 1 Score: 581.6 bits (1498), Expect = 4.2e-162 Identity = 268/276 (97.10%), Postives = 271/276 (98.19%), Query Frame = 0
BLAST of Carg06733-RA vs. ExPASy TrEMBL
Match: A0A6J1GRA7 (uncharacterized protein LOC111456814 OS=Cucurbita moschata OX=3662 GN=LOC111456814 PE=4 SV=1) HSP 1 Score: 597.4 bits (1539), Expect = 3.6e-167 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
BLAST of Carg06733-RA vs. ExPASy TrEMBL
Match: A0A6J1JZQ3 (uncharacterized protein LOC111490288 OS=Cucurbita maxima OX=3661 GN=LOC111490288 PE=4 SV=1) HSP 1 Score: 581.6 bits (1498), Expect = 2.0e-162 Identity = 268/276 (97.10%), Postives = 271/276 (98.19%), Query Frame = 0
BLAST of Carg06733-RA vs. ExPASy TrEMBL
Match: A0A5D3BLE9 (Glycosyl transferase, family 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003730 PE=4 SV=1) HSP 1 Score: 541.2 bits (1393), Expect = 3.1e-150 Identity = 245/283 (86.57%), Postives = 263/283 (92.93%), Query Frame = 0
BLAST of Carg06733-RA vs. ExPASy TrEMBL
Match: A0A1S3AWN5 (uncharacterized protein LOC103483617 OS=Cucumis melo OX=3656 GN=LOC103483617 PE=4 SV=1) HSP 1 Score: 533.9 bits (1374), Expect = 4.9e-148 Identity = 241/276 (87.32%), Postives = 258/276 (93.48%), Query Frame = 0
BLAST of Carg06733-RA vs. ExPASy TrEMBL
Match: A0A0A0LTJ0 (GUB_WAK_bind domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G046160 PE=4 SV=1) HSP 1 Score: 532.7 bits (1371), Expect = 1.1e-147 Identity = 240/276 (86.96%), Postives = 258/276 (93.48%), Query Frame = 0
BLAST of Carg06733-RA vs. TAIR 10
Match: AT5G50290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 402.1 bits (1032), Expect = 4.3e-112 Identity = 167/248 (67.34%), Postives = 208/248 (83.87%), Query Frame = 0
BLAST of Carg06733-RA vs. TAIR 10
Match: AT3G17350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 166.0 bits (419), Expect = 5.1e-41 Identity = 92/275 (33.45%), Postives = 139/275 (50.55%), Query Frame = 0
BLAST of Carg06733-RA vs. TAIR 10
Match: AT1G10380.1 (Putative membrane lipoprotein ) HSP 1 Score: 130.6 bits (327), Expect = 2.4e-30 Identity = 84/280 (30.00%), Postives = 128/280 (45.71%), Query Frame = 0
BLAST of Carg06733-RA vs. TAIR 10
Match: AT1G11915.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 122.1 bits (305), Expect = 8.5e-28 Identity = 92/284 (32.39%), Postives = 128/284 (45.07%), Query Frame = 0
BLAST of Carg06733-RA vs. TAIR 10
Match: AT1G21250.1 (cell wall-associated kinase ) HSP 1 Score: 44.7 bits (104), Expect = 1.7e-04 Identity = 43/172 (25.00%), Postives = 71/172 (41.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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