Carg06081-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06081-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Trinucleotide repeat-containing gene 18 protein-like protein
Location	Carg_Chr04: 21818133 .. 21818723 (-)
Sequence length	591
RNA-Seq Expression	Carg06081-RA
Synteny	Carg06081-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAATCTTCTCGCCGGACTCGTTCTTTCTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTCGCGGTTCTTACTATTTTCCCGATGACTCTCCGCTCTCCGCCGCCACTCCGATCCGATCATTCTCCGGCAGCATTCCCTTTTCCTGGGAATATTTACCCGGAATCCCCAAGAAACAGTCTCCAGCGAGGCTTCGGCTAGATTCCGCCTCTCCTCTGACCTCTCTCCTCCCCTTGCCTCCCATTTCCACCACTCTGCCGTCCTCCAAGCGCTTCGGATTTCACGACTGGAGGAAATCAAACCGCCAAAATCCGCAGCGAGATCCTTTCTTCGACGCCTTCGTCGAGTGCTCCAAAGAACCTTCCGCCGCCACCGCTGCTGAGCAAGACCCGACTGCCGAGCTCTGGAACAGCGGCAGCAATGGCAAAGCGGTTTCGAGAAGCCTGAGCGACCGATTCGGATTCCTGAATCCGTACTCTTCTTGCAAACGAACCTGCGGCGTTTCGGAATCCATCGTGTATCGTCCGAGAAGGGGGAGGAGTTCGTTCGATCTGCTAAACCACCGCAACGGTGGGTAA

mRNA sequence

ATGTTTCAATCTTCTCGCCGGACTCGTTCTTTCTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTCGCGGTTCTTACTATTTTCCCGATGACTCTCCGCTCTCCGCCGCCACTCCGATCCGATCATTCTCCGGCAGCATTCCCTTTTCCTGGGAATATTTACCCGGAATCCCCAAGAAACAGTCTCCAGCGAGGCTTCGGCTAGATTCCGCCTCTCCTCTGACCTCTCTCCTCCCCTTGCCTCCCATTTCCACCACTCTGCCGTCCTCCAAGCGCTTCGGATTTCACGACTGGAGGAAATCAAACCGCCAAAATCCGCAGCGAGATCCTTTCTTCGACGCCTTCGTCGAGTGCTCCAAAGAACCTTCCGCCGCCACCGCTGCTGAGCAAGACCCGACTGCCGAGCTCTGGAACAGCGGCAGCAATGGCAAAGCGGTTTCGAGAAGCCTGAGCGACCGATTCGGATTCCTGAATCCGTACTCTTCTTGCAAACGAACCTGCGGCGTTTCGGAATCCATCGTGTATCGTCCGAGAAGGGGGAGGAGTTCGTTCGATCTGCTAAACCACCGCAACGGTGGGTAA

Coding sequence (CDS)

ATGTTTCAATCTTCTCGCCGGACTCGTTCTTTCTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTCGCGGTTCTTACTATTTTCCCGATGACTCTCCGCTCTCCGCCGCCACTCCGATCCGATCATTCTCCGGCAGCATTCCCTTTTCCTGGGAATATTTACCCGGAATCCCCAAGAAACAGTCTCCAGCGAGGCTTCGGCTAGATTCCGCCTCTCCTCTGACCTCTCTCCTCCCCTTGCCTCCCATTTCCACCACTCTGCCGTCCTCCAAGCGCTTCGGATTTCACGACTGGAGGAAATCAAACCGCCAAAATCCGCAGCGAGATCCTTTCTTCGACGCCTTCGTCGAGTGCTCCAAAGAACCTTCCGCCGCCACCGCTGCTGAGCAAGACCCGACTGCCGAGCTCTGGAACAGCGGCAGCAATGGCAAAGCGGTTTCGAGAAGCCTGAGCGACCGATTCGGATTCCTGAATCCGTACTCTTCTTGCAAACGAACCTGCGGCGTTTCGGAATCCATCGTGTATCGTCCGAGAAGGGGGAGGAGTTCGTTCGATCTGCTAAACCACCGCAACGGTGGGTAA

Protein sequence

MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGIPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYRPRRGRSSFDLLNHRNGG

Homology

[Close]

BLAST of Carg06081-RA vs. NCBI nr
Match: KAG7033401.1 (hypothetical protein SDJN02_07457, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.4 bits (973), Expect = 1.9e-101
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 60
           MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI
Sbjct: 1   MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 60

Query: 61  PKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFVE 120
           PKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFVE
Sbjct: 61  PKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFVE 120

Query: 121 CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYRP 180
           CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYRP
Sbjct: 121 CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYRP 180

Query: 181 RRGRSSFDLLNHRNGG 197
           RRGRSSFDLLNHRNGG
Sbjct: 181 RRGRSSFDLLNHRNGG 196

[Close]

BLAST of Carg06081-RA vs. NCBI nr
Match: KAG6602714.1 (hypothetical protein SDJN03_07947, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374.8 bits (961), Expect = 4.6e-100
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MFQSSRRTRSF-SSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG 60
           MFQSSRRTRSF SSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG
Sbjct: 1   MFQSSRRTRSFSSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG 60

Query: 61  IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFV 120
           IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFV
Sbjct: 61  IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFV 120

Query: 121 ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYR 180
           ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYR
Sbjct: 121 ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYR 180

Query: 181 PRRGRSSFDLLNHRNGG 197
           PRRGRSSFDLLNHRNGG
Sbjct: 181 PRRGRSSFDLLNHRNGG 197

[Close]

BLAST of Carg06081-RA vs. NCBI nr
Match: XP_023528120.1 (uncharacterized protein LOC111791129 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.6 bits (945), Expect = 3.3e-98
Identity = 194/199 (97.49%), Postives = 194/199 (97.49%), Query Frame = 0


Query: 1   MFQSSRRTRSF---SSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYL 60
           MFQSSRRTRSF   SSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYL
Sbjct: 1   MFQSSRRTRSFSSSSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYL 60

Query: 61  PGIPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDA 120
           PGIPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQN QRDPFFDA
Sbjct: 61  PGIPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNSQRDPFFDA 120

Query: 121 FVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIV 180
           FVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDR GFLNPYSSCKRTCGVSESIV
Sbjct: 121 FVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRLGFLNPYSSCKRTCGVSESIV 180

Query: 181 YRPRRGRSSFDLLNHRNGG 197
           YRPRRGRSSFDLLNHRNGG
Sbjct: 181 YRPRRGRSSFDLLNHRNGG 199

[Close]

BLAST of Carg06081-RA vs. NCBI nr
Match: XP_022953683.1 (uncharacterized protein LOC111456137 [Cucurbita moschata])

HSP 1 Score: 368.2 bits (944), Expect = 4.3e-98
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSS-SSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG 60
           MFQSSRRTRSFSSSS SSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG
Sbjct: 1   MFQSSRRTRSFSSSSPSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG 60

Query: 61  IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFV 120
           IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQN QRDPFFDAFV
Sbjct: 61  IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNSQRDPFFDAFV 120

Query: 121 ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYR 180
           ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNP SSCKRTCGVSESIVYR
Sbjct: 121 ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPNSSCKRTCGVSESIVYR 180

Query: 181 PRRGRSSFDLLNHRNGG 197
           PRRGRSSFDLLNHRNGG
Sbjct: 181 PRRGRSSFDLLNHRNGG 197

[Close]

BLAST of Carg06081-RA vs. NCBI nr
Match: XP_022991024.1 (uncharacterized protein LOC111487739 [Cucurbita maxima])

HSP 1 Score: 367.9 bits (943), Expect = 5.6e-98
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 60
           MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI
Sbjct: 1   MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 60

Query: 61  PKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFVE 120
           PKKQSPARLRLDSASPLT LLPLPPIST LPSSKRFGFHDWRKSNRQN QRDPFFDAFVE
Sbjct: 61  PKKQSPARLRLDSASPLTFLLPLPPISTALPSSKRFGFHDWRKSNRQNSQRDPFFDAFVE 120

Query: 121 CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYRP 180
           CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTC VSESIVYRP
Sbjct: 121 CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCSVSESIVYRP 180

Query: 181 RRGRSSFDLLNHRNGG 197
           RRGRSSFDLLNHR+GG
Sbjct: 181 RRGRSSFDLLNHRSGG 196

[Close]

BLAST of Carg06081-RA vs. ExPASy TrEMBL
Match: A0A6J1GNZ5 (uncharacterized protein LOC111456137 OS=Cucurbita moschata OX=3662 GN=LOC111456137 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.1e-98
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSS-SSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG 60
           MFQSSRRTRSFSSSS SSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG
Sbjct: 1   MFQSSRRTRSFSSSSPSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPG 60

Query: 61  IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFV 120
           IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQN QRDPFFDAFV
Sbjct: 61  IPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNSQRDPFFDAFV 120

Query: 121 ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYR 180
           ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNP SSCKRTCGVSESIVYR
Sbjct: 121 ECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPNSSCKRTCGVSESIVYR 180

Query: 181 PRRGRSSFDLLNHRNGG 197
           PRRGRSSFDLLNHRNGG
Sbjct: 181 PRRGRSSFDLLNHRNGG 197

[Close]

BLAST of Carg06081-RA vs. ExPASy TrEMBL
Match: A0A6J1JTM6 (uncharacterized protein LOC111487739 OS=Cucurbita maxima OX=3661 GN=LOC111487739 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.7e-98
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 60
           MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI
Sbjct: 1   MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 60

Query: 61  PKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFVE 120
           PKKQSPARLRLDSASPLT LLPLPPIST LPSSKRFGFHDWRKSNRQN QRDPFFDAFVE
Sbjct: 61  PKKQSPARLRLDSASPLTFLLPLPPISTALPSSKRFGFHDWRKSNRQNSQRDPFFDAFVE 120

Query: 121 CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYRP 180
           CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTC VSESIVYRP
Sbjct: 121 CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCSVSESIVYRP 180

Query: 181 RRGRSSFDLLNHRNGG 197
           RRGRSSFDLLNHR+GG
Sbjct: 181 RRGRSSFDLLNHRSGG 196

[Close]

BLAST of Carg06081-RA vs. ExPASy TrEMBL
Match: A0A5D3C8I6 (Trinucleotide repeat-containing gene 18 protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001240 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.2e-75
Identity = 161/200 (80.50%), Postives = 171/200 (85.50%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSSS---SSSSSSSSSRGSYYFPDDSPLSA-ATPIRSFSGSIPFSWEY 60
           MFQSSRRT SFSSSSS   SSSSSSSSSRGSYYFP +SP SA ATPIRSFSG+IPFSWE+
Sbjct: 1   MFQSSRRTHSFSSSSSNSLSSSSSSSSSRGSYYFPGESPFSASATPIRSFSGNIPFSWEH 60

Query: 61  LPGIPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFD 120
           LPGIPKKQSPARLR  SASPL+SLLPLPP STTL SSKRFGF DWRKSNRQNPQRDPFFD
Sbjct: 61  LPGIPKKQSPARLRRGSASPLSSLLPLPPNSTTLSSSKRFGFQDWRKSNRQNPQRDPFFD 120

Query: 121 AFVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESI 180
           AF+ECSKEP+ A        AELW+  SNGKA++RSLSDRFGFLN YSSCKRTCGVSESI
Sbjct: 121 AFLECSKEPTNAAV-----DAELWSGASNGKAITRSLSDRFGFLNLYSSCKRTCGVSESI 180

Query: 181 VYRPRRGRSSFDLLNHRNGG 197
           VY PR   SSFDLLN R+GG
Sbjct: 181 VYLPRTPTSSFDLLNQRSGG 195

[Close]

BLAST of Carg06081-RA vs. ExPASy TrEMBL
Match: A0A1S3B2H5 (uncharacterized protein LOC103485423 OS=Cucumis melo OX=3656 GN=LOC103485423 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 7.2e-75
Identity = 161/200 (80.50%), Postives = 171/200 (85.50%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSSS---SSSSSSSSSRGSYYFPDDSPLSA-ATPIRSFSGSIPFSWEY 60
           MFQSSRRT SFSSSSS   SSSSSSSSSRGSYYFP +SP SA ATPIRSFSG+IPFSWE+
Sbjct: 1   MFQSSRRTHSFSSSSSNSLSSSSSSSSSRGSYYFPGESPFSASATPIRSFSGNIPFSWEH 60

Query: 61  LPGIPKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFD 120
           LPGIPKKQSPARLR  SASPL+SLLPLPP STTL SSKRFGF DWRKSNRQNPQRDPFFD
Sbjct: 61  LPGIPKKQSPARLRRGSASPLSSLLPLPPNSTTLSSSKRFGFQDWRKSNRQNPQRDPFFD 120

Query: 121 AFVECSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESI 180
           AF+ECSKEP+ A        AELW+  SNGKA++RSLSDRFGFLN YSSCKRTCGVSESI
Sbjct: 121 AFLECSKEPTNAAV-----DAELWSGASNGKAITRSLSDRFGFLNLYSSCKRTCGVSESI 180

Query: 181 VYRPRRGRSSFDLLNHRNGG 197
           VY PR   SSFDLLN R+GG
Sbjct: 181 VYLPRTPTSSFDLLNQRSGG 195

[Close]

BLAST of Carg06081-RA vs. ExPASy TrEMBL
Match: A0A6J1DE38 (uncharacterized protein LOC111020211 OS=Momordica charantia OX=3673 GN=LOC111020211 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69
Identity = 154/194 (79.38%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MFQSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 60
           MFQSSRRT SF  SSSSS SSSSSSRGSYYFPDDSPLS+ATPIRSFSG+IPFSWE+LPGI
Sbjct: 1   MFQSSRRTHSF--SSSSSLSSSSSSRGSYYFPDDSPLSSATPIRSFSGAIPFSWEHLPGI 60

Query: 61  PKK-QSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFV 120
           PKK QSPARLR DSASPLTSLLPLPP STT PSSKRFGF +WRKSNR N QRDPFFDAFV
Sbjct: 61  PKKLQSPARLRQDSASPLTSLLPLPPNSTTPPSSKRFGFQEWRKSNRHNSQRDPFFDAFV 120

Query: 121 ECSKEPSAATAAEQDPTAELWNSG---SNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESI 180
           ECSK+ ++A        AELW+ G   + GKA+SRSLSDRFGFLN YSSCKRTCGVSESI
Sbjct: 121 ECSKDRASA-------AAELWSGGGGSNGGKAISRSLSDRFGFLNLYSSCKRTCGVSESI 180

Query: 181 VYRPRRGRSSFDLL 191
           V  PR  RSSFDLL
Sbjct: 181 VCLPRTPRSSFDLL 185

[Close]

BLAST of Carg06081-RA vs. TAIR 10
Match: AT1G71970.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-20
Identity = 84/201 (41.79%), Postives = 107/201 (53.23%), Query Frame = 0


Query: 3   QSSRRTRSFSSSSSSSSSSSSSSRGSYYFPDDSPL-SAATPIRSFSGSIPFSWEYLPGIP 62
           +SS  +R   SSSSS SS SS S  S  FP DSPL S ATP+R     +PFSWE LPG P
Sbjct: 21  KSSISSRRSLSSSSSFSSFSSCSSSSLVFPGDSPLNSPATPLRLL--GVPFSWEQLPGKP 80

Query: 63  KKQSPARLRLDSASPLTSLLPLPP---ISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAF 122
           K  S       +      LLPLPP   IS      K    +  +K++     +DPF  A 
Sbjct: 81  KDYSHRLNNRRNNESSNLLLPLPPHRNISFPATGKKPKPNNSSKKNSFPVTGKDPFAAAL 140

Query: 123 VECSKEPSAATAAEQDPTAE-------LWNSGSNGKAVSR-SLSDRFGFLNPYSSCKRTC 182
           +ECSK+    +  + D             NSG + K +S+ S+ DRFG +N Y SC+RTC
Sbjct: 141 LECSKDEGTNSDNDDDVDGVEDVDRRFRGNSGGSSKVLSKNSIGDRFGLVNLYGSCRRTC 200

Query: 183 GVSESIVYRPR-RGRSSFDLL 191
            V+ESIVY PR R  +S+D L
Sbjct: 201 AVTESIVYLPRARKAASYDNL 219

[Close]

BLAST of Carg06081-RA vs. TAIR 10
Match: AT1G22680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1); Has 44 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 7.0e-14
Identity = 77/191 (40.31%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 5   SRRTRSFSSSS----SSSSSSSSSSRGSYYFPDDSPLSAATPIRSFSGSIPFSWEYLPGI 64
           +RR+ S   SS    S+  S SSSS  S  F  +SP   ATP+      IPFSWE LPG 
Sbjct: 12  TRRSNSVKFSSTVNISTRRSLSSSSSNSLLFSGNSP---ATPLHPL--GIPFSWEKLPGK 71

Query: 65  PKKQSPARLRLDSASPLTSLLPLPPISTTLPSSKRFGFHDWRKSNRQNPQRDPFFDAFVE 124
           PK+ S  R        L++LLPLPP  +    + R      +K+      RDPF  A VE
Sbjct: 72  PKEFSYHR----KNESLSNLLPLPPHWSNHSPNTR-----CKKNTSPAAMRDPFMAALVE 131

Query: 125 CSKEPSAATAAEQDPTAELWNSGSNGKAVSRSLSDRFGFLNPYSSCKRTCGVSESIVYRP 184
           CSK   A T  E          G + K + +S S   G LN YSSC+R C VSESIVY P
Sbjct: 132 CSK--GATTDGEH-------TGGESRKVLRKSRS--IGLLNLYSSCRRACEVSESIVYLP 176

Query: 185 RRGRSSFDLLN 192
            +  +S+D L+
Sbjct: 192 -KSIASYDHLH 176

The following BLAST results are available for this feature:

BLAST of Carg06081-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033401.1	1.9e-101	100.00	hypothetical protein SDJN02_07457, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6602714.1	4.6e-100	99.49	hypothetical protein SDJN03_07947, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023528120.1	3.3e-98	97.49	uncharacterized protein LOC111791129 [Cucurbita pepo subsp. pepo]	[more]
XP_022953683.1	4.3e-98	98.48	uncharacterized protein LOC111456137 [Cucurbita moschata]	[more]
XP_022991024.1	5.6e-98	97.45	uncharacterized protein LOC111487739 [Cucurbita maxima]	[more]

BLAST of Carg06081-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06081-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNZ5	2.1e-98	98.48	uncharacterized protein LOC111456137 OS=Cucurbita moschata OX=3662 GN=LOC1114561...	[more]
A0A6J1JTM6	2.7e-98	97.45	uncharacterized protein LOC111487739 OS=Cucurbita maxima OX=3661 GN=LOC111487739...	[more]
A0A5D3C8I6	7.2e-75	80.50	Trinucleotide repeat-containing gene 18 protein-like protein OS=Cucumis melo var...	[more]
A0A1S3B2H5	7.2e-75	80.50	uncharacterized protein LOC103485423 OS=Cucumis melo OX=3656 GN=LOC103485423 PE=...	[more]
A0A6J1DE38	2.7e-69	79.38	uncharacterized protein LOC111020211 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Carg06081-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71970.1	1.0e-20	41.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G22680.1	7.0e-14	40.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..146
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 3..184
None	No IPR available	PANTHER	PTHR33696:SF1	T22J18.15	coord: 3..184

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg06081	Carg06081	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06081-RA:1	Carg06081-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06081-RA:cds	Carg06081-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg06081-RA	Carg06081-RA-protein	polypeptide