Carg05804-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05804-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 4592070 .. 4592297 (+)
Sequence length	228
RNA-Seq Expression	Carg05804-RA
Synteny	Carg05804-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTGCAAAAAACAAAGCTCCCACACTTCTGAGTCCTTCTTTCTCCGCCATAGCCGCCAAAATTCCTGCCATTTCCGGCCCCTCTCCGCCGCCCCTGCAACCATACTTTTGCCGGATTTCGAATCCAAATTCTGTTTCATACGACGAAGTTAAAAGCGAAGGAAGATTCGAGGAGGAACGAGGAAGAAGAAGGATGAAAGAGAAGAAATGGTTTGATTTATGA

mRNA sequence

ATGGCAAGTGCAAAAAACAAAGCTCCCACACTTCTGAGTCCTTCTTTCTCCGCCATAGCCGCCAAAATTCCTGCCATTTCCGGCCCCTCTCCGCCGCCCCTGCAACCATACTTTTGCCGGATTTCGAATCCAAATTCTGTTTCATACGACGAAGTTAAAAGCGAAGGAAGATTCGAGGAGGAACGAGGAAGAAGAAGGATGAAAGAGAAGAAATGGTTTGATTTATGA

Coding sequence (CDS)

ATGGCAAGTGCAAAAAACAAAGCTCCCACACTTCTGAGTCCTTCTTTCTCCGCCATAGCCGCCAAAATTCCTGCCATTTCCGGCCCCTCTCCGCCGCCCCTGCAACCATACTTTTGCCGGATTTCGAATCCAAATTCTGTTTCATACGACGAAGTTAAAAGCGAAGGAAGATTCGAGGAGGAACGAGGAAGAAGAAGGATGAAAGAGAAGAAATGGTTTGATTTATGA

Protein sequence

MASAKNKAPTLLSPSFSAIAAKIPAISGPSPPPLQPYFCRISNPNSVSYDEVKSEGRFEEERGRRRMKEKKWFDL

Homology

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BLAST of Carg05804-RA vs. NCBI nr
Match: KAG7015371.1 (hypothetical protein SDJN02_23006, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MASAKNKAPTLLSPSFSAIAAKIPAISGPSPPPLQPYFCRISNPNSVSYDEVKSEGRFEE 60
          MASAKNKAPTLLSPSFSAIAAKIPAISGPSPPPLQPYFCRISNPNSVSYDEVKSEGRFEE
Sbjct: 1  MASAKNKAPTLLSPSFSAIAAKIPAISGPSPPPLQPYFCRISNPNSVSYDEVKSEGRFEE 60

Query: 61 ERGRRRMKEKKWFDL 76
          ERGRRRMKEKKWFDL
Sbjct: 61 ERGRRRMKEKKWFDL 75

The following BLAST results are available for this feature:

BLAST of Carg05804-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015371.1	2.7e-32	100.00	hypothetical protein SDJN02_23006, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg05804-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05804-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05804-RA vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..75

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05804	Carg05804	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05804-RA:1	Carg05804-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05804-RA:cds	Carg05804-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05804-RA	Carg05804-RA-protein	polypeptide