Carg05332-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05332-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ring finger protein, putative
Location	Carg_Chr07: 4281919 .. 4282437 (-)
Sequence length	519
RNA-Seq Expression	Carg05332-RA
Synteny	Carg05332-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCTAGATAG

mRNA sequence

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCTAGATAG

Coding sequence (CDS)

ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCTAGATAG

Protein sequence

MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR

Homology

[Close]

BLAST of Carg05332-RA vs. NCBI nr
Match: XP_022963187.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata] >KAG7027167.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348.2 bits (892), Expect = 4.0e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN
Sbjct: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 173
           DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 172

[Close]

BLAST of Carg05332-RA vs. NCBI nr
Match: KAG6595151.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNN N
Sbjct: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNAN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 173
           DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 172

[Close]

BLAST of Carg05332-RA vs. NCBI nr
Match: XP_023518789.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.4 bits (864), Expect = 7.1e-89
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGTDDGGGFLSSGNIGG GYGIGVSLGLLILITTILLASYYCTRV QSPTSGIQ+N N
Sbjct: 1   MNNGTDDGGGFLSSGNIGGDGYGIGVSLGLLILITTILLASYYCTRVAQSPTSGIQSNAN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 173
           DVLRILPDCGHLFHLKCVDPWLRLHPTCP CRTSPIPTPLSTPLAEQVPLAR
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPFCRTSPIPTPLSTPLAEQVPLAR 172

[Close]

BLAST of Carg05332-RA vs. NCBI nr
Match: XP_022977896.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 2.0e-70
Identity = 138/171 (80.70%), Postives = 150/171 (87.72%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT D GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A VVVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           +VLR LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Carg05332-RA vs. NCBI nr
Match: XP_023544988.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 3.3e-70
Identity = 138/171 (80.70%), Postives = 150/171 (87.72%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT D GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A VVVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           +VLR LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Carg05332-RA vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-46
Identity = 97/167 (58.08%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 7   DGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPP 66
           D  G L + +IGG+ YGIGVS+G+L+LITTI L SYYCTR  Q  +S  Q N + +    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTR-NQLSSSPSQTNQDST---- 110

Query: 67  PRLAEEDAVVVVDI--GIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLR 126
            R+      V++D+  G+D++TI+++PK+LYSEAK     ++ASCC+ICL DYK   +LR
Sbjct: 111 -RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLR 170

Query: 127 ILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
            LPDC HLFHLKC+D WLRL+PTCPVCRTSP+PTPLSTPLAE VPLA
Sbjct: 171 QLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of Carg05332-RA vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43
Identity = 96/182 (52.75%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 8   GGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTR--VVQSPTS-------GIQNN 67
           G    ++  +GG  YGIGVS+G+L+LITTI L SYYCTR  +  SPT+         ++N
Sbjct: 11  GHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESN 70

Query: 68  VNLSPPPPPRL----AEEDAVVVVDIGIDQETIRNFPKLLYSEAKI----QNNDSSASCC 127
             L PP   R      E D VVV  +G+ +E I+ FPKL Y EA++    Q   S+ SCC
Sbjct: 71  GTL-PPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 130

Query: 128 SICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 173
           SICLADYK  D++R+LPDC HLFH  CVDPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 131 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 190

[Close]

BLAST of Carg05332-RA vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.3e-28
Identity = 69/171 (40.35%), Postives = 110/171 (64.33%), Query Frame = 0


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQN----NVNLSPPPPPRLAEEDA 78
           G+GY I ++LG L+L++T+LL+SY C R  +  T+ +++      ++  P    +AEED 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  VVV----VDIGIDQETIRNFPKLLYS-EAKIQNND----SSASCCSICLADYKNSDVLRI 138
             +    V +G+DQ  I ++PK  +S +    ++D       + CSICL +YK +++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 139 LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLAR 173
           +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL++
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQ 204

[Close]

BLAST of Carg05332-RA vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 59/153 (38.56%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVV 78
           G GYGI +++ +L+LI+ I+LASY C R   +      ++V L  P P           V
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP--------AAEV 71

Query: 79  DIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCV 138
            +G+D+  I ++P+++  +++     ++   CSICL DY+  + +R +P+C H FH  CV
Sbjct: 72  KLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCV 131

Query: 139 DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           D WLR   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 DEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg05332-RA vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-25
Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPR---------L 78
           G GY I ++LG L+LI+TI+L+SY C R  +   S    N N +     R         +
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  AEEDAVV---VVDIGIDQETIRNFPKLLYSE--AKIQNND------SSASCCSICLADYK 138
           AE+D +    VV  G+D   I ++PK  +++    + N D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLAR 173
             ++LR++P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL++
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLSQ 202

[Close]

BLAST of Carg05332-RA vs. ExPASy TrEMBL
Match: A0A6J1HEI7 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111463471 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.0e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN
Sbjct: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
           LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS
Sbjct: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 173
           DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR
Sbjct: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 172

[Close]

BLAST of Carg05332-RA vs. ExPASy TrEMBL
Match: A0A6J1IL86 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.5e-71
Identity = 138/171 (80.70%), Postives = 150/171 (87.72%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT D GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A VVVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           +VLR LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Carg05332-RA vs. ExPASy TrEMBL
Match: A0A6J1EJP9 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.7e-70
Identity = 137/171 (80.12%), Postives = 149/171 (87.13%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT D GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR   S TS ++ N N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            SPP     AE +A  VVD+G+DQETI+++PKLLYSEAK+  NDSSASCCSICLADYKNS
Sbjct: 61  RSPPQ----AEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           +VLR LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 NVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 167

[Close]

BLAST of Carg05332-RA vs. ExPASy TrEMBL
Match: A0A5A7SKL1 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001830 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.0e-69
Identity = 139/171 (81.29%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT + GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR   S TS IQ+  +
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            S  PP  +AE D+ VVV+IG+DQETI ++PKLLYSEAK+Q NDS+ASCCSICLADYKNS
Sbjct: 61  RS--PPQAVAELDS-VVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           DVLR+LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 DVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168

[Close]

BLAST of Carg05332-RA vs. ExPASy TrEMBL
Match: A0A1S3CHE9 (RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.0e-69
Identity = 139/171 (81.29%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVN 60
           MNNGT + GGFLSS NIGG+GYGIGVSLGLLILITTILLASYYCTR   S TS IQ+  +
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  LSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNS 120
            S  PP  +AE D+ VVV+IG+DQETI ++PKLLYSEAK+Q NDS+ASCCSICLADYKNS
Sbjct: 61  RS--PPQAVAELDS-VVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNS 120

Query: 121 DVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           DVLR+LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA
Sbjct: 121 DVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168

[Close]

BLAST of Carg05332-RA vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-47
Identity = 97/167 (58.08%), Postives = 124/167 (74.25%), Query Frame = 0


Query: 7   DGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPP 66
           D  G L + +IGG+ YGIGVS+G+L+LITTI L SYYCTR  Q  +S  Q N + +    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTR-NQLSSSPSQTNQDST---- 110

Query: 67  PRLAEEDAVVVVDI--GIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLR 126
            R+      V++D+  G+D++TI+++PK+LYSEAK     ++ASCC+ICL DYK   +LR
Sbjct: 111 -RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK---GPTTASCCAICLGDYKGKHLLR 170

Query: 127 ILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
            LPDC HLFHLKC+D WLRL+PTCPVCRTSP+PTPLSTPLAE VPLA
Sbjct: 171 QLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of Carg05332-RA vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44
Identity = 96/182 (52.75%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 8   GGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTR--VVQSPTS-------GIQNN 67
           G    ++  +GG  YGIGVS+G+L+LITTI L SYYCTR  +  SPT+         ++N
Sbjct: 11  GHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESN 70

Query: 68  VNLSPPPPPRL----AEEDAVVVVDIGIDQETIRNFPKLLYSEAKI----QNNDSSASCC 127
             L PP   R      E D VVV  +G+ +E I+ FPKL Y EA++    Q   S+ SCC
Sbjct: 71  GTL-PPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 130

Query: 128 SICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 173
           SICLADYK  D++R+LPDC HLFH  CVDPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 131 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 190

[Close]

BLAST of Carg05332-RA vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 5.2e-29
Identity = 69/171 (40.35%), Postives = 110/171 (64.33%), Query Frame = 0


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQN----NVNLSPPPPPRLAEEDA 78
           G+GY I ++LG L+L++T+LL+SY C R  +  T+ +++      ++  P    +AEED 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  VVV----VDIGIDQETIRNFPKLLYS-EAKIQNND----SSASCCSICLADYKNSDVLRI 138
             +    V +G+DQ  I ++PK  +S +    ++D       + CSICL +YK +++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 139 LPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLAR 173
           +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL++
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQ 204

[Close]

BLAST of Carg05332-RA vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 59/153 (38.56%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVV 78
           G GYGI +++ +L+LI+ I+LASY C R   +      ++V L  P P           V
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSP--------AAEV 71

Query: 79  DIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCV 138
            +G+D+  I ++P+++  +++     ++   CSICL DY+  + +R +P+C H FH  CV
Sbjct: 72  KLGLDRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCV 131

Query: 139 DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLA 172
           D WLR   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 DEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Carg05332-RA vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-26
Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 19  GYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPR---------L 78
           G GY I ++LG L+LI+TI+L+SY C R  +   S    N N +     R         +
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  AEEDAVV---VVDIGIDQETIRNFPKLLYSE--AKIQNND------SSASCCSICLADYK 138
           AE+D +    VV  G+D   I ++PK  +++    + N D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLAR 173
             ++LR++P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL++
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLSQ 202

The following BLAST results are available for this feature:

BLAST of Carg05332-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963187.1	4.0e-92	100.00	RING-H2 finger protein ATL70-like [Cucurbita moschata] >KAG7027167.1 putative RI...	[more]
KAG6595151.1	1.2e-91	99.42	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023518789.1	7.1e-89	97.09	RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977896.1	2.0e-70	80.70	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
XP_023544988.1	3.3e-70	80.70	RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05332-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	3.5e-46	58.08	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	2.1e-43	52.75	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	7.3e-28	40.35	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	1.5e-25	38.56	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	4.4e-25	38.20	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Carg05332-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEI7	2.0e-92	100.00	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111463471 ...	[more]
A0A6J1IL86	9.5e-71	80.70	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE...	[more]
A0A6J1EJP9	4.7e-70	80.12	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 ...	[more]
A0A5A7SKL1	4.0e-69	81.29	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CHE9	4.0e-69	81.29	RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 S...	[more]

BLAST of Carg05332-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	2.5e-47	58.08	RING/U-box superfamily protein	[more]
AT5G06490.1	1.5e-44	52.75	RING/U-box superfamily protein	[more]
AT2G46160.1	5.2e-29	40.35	RING/U-box superfamily protein	[more]
AT5G07040.1	1.1e-26	38.56	RING/U-box superfamily protein	[more]
AT3G61550.1	3.1e-26	38.20	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 110..151 e-value: 1.8E-7 score: 40.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 110..152 e-value: 1.3E-12 score: 47.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 110..152 score: 12.931868
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 71..156 e-value: 2.7E-22 score: 80.2
None	No IPR available	PANTHER	PTHR46719:SF2	RING-H2 FINGER PROTEIN ATL70-LIKE	coord: 5..171
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 5..171
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 109..152 e-value: 2.00096E-19 score: 75.0309
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05332	Carg05332	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05332-RA:1	Carg05332-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05332-RA:cds	Carg05332-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05332-RA	Carg05332-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane