Carg05245-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05245-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cold-regulated 413 plasma membrane protein 2
Location	Carg_Chr07: 3729724 .. 3731577 (+)
Sequence length	866
RNA-Seq Expression	Carg05245-RA
Synteny	Carg05245-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGAAAACCAATCTGATCCGAAACTTCCAACCATTTTGGAGTCTCTAACTCTGCTGAAAACAAGGAGATTGACCGCTTTACATTTTCCCATCACCCAGTTCCTTCGAAACTATAAGTATGCATCCAAGGTGTTTGAATAAATGCTTCACCGACTCTCACACTTTGAATACTCTTCTTCACTTCCCTGTAACATTTTCTCAAGCCAAATGGGGAGGATGCCATATTTGGCTCTCAATAGTGATCCGCTGATTGATGAGATTTTAAATTCTGATTTCAATGAGCTTAAAATTGCAGCCACCAGGCTTATTCATCATGCCGCCAAGCTCGGTGGAAAGGGCCTTGGGACTTCTTTTTTCAAATGGCTTGCCTCTTTTGCTGCCATGTGAGTGCTTTCTAATGCAATGGAGGCCAAAAAATGGGTCCCTTTTGGATTATTTATGGACTCTGCTTGTTCTTGGTTCTAAAGTTCATGTTTTTTTTTTTATTACATCACCGTGCAGTTACTTGTTGATTTTGGACCGCACAAACTGGAGAACAAACATGCTTACTTCGCTTCTTGTCCCTTACATTTTCTTCAGTCTTCCTGAAGGAATTTTCGACTTAGTGAGGTGACAGTCACGCTCGTTTCTTCTTATTTTTATTGCTTTAGCTGATGGCTTTCAAATGTTAACGATATGGTTTTCTTCTTGATTTTGTTAAGAGGGGATGCTGGGAAATGGATTGCCTTCGTTGCAGTGGTATTGAGGCTCTTCTTCCCACGACATTTCCCAGGTAATAAGCATGGTGTCCTCTGTTTAGTTTTCCACAACATATTGTTCAGTAACCTGCTGTTTTGTATGATAAAAGCATTGCTTTTGGATTTGTGACATCCCGTAGGAAAGGGGGAACAAAGCCTTCCTTATAAGGGTATGGAAATTTCTTCACGCGTGTTAAAACTTTAGGGGAAGCCGACCAGAGAATATCTAACAATATATCTAACAATATCTTCTAGCAGTGAGCTTGGTGTGCCAGCAAGGACGATTGCCCCTAGGGGGTGAATTGTGAGATCTCATATGGTCGGTGTGCCAGCATGGACGATGGCCCCTAAAGGGTGAATTGTGAGATCTCATATTTGTTGGAGAGGGGAACAAAGTATTACTAGTGTAGAAACCTCTCCGAACAGACATGTTTTAAAACTTTGAGTGGAAACTAGAAGAGAGTCAAAAGAGGATCATATCTCTTGGGCTTGAACGGAGAGTCAGACATCGGGCGGTATGCCAGCGAGCATGTTGTGCATGGAAATCTCTCTGACAGATGGAGATCTCTCTGACAGATGACTAATTTTAAAACTTTGAGTGAAGCCTGAATCATATCTCTCCTTGAATAATTTAACTTTGAGTGAAACCTTGTATGATGCCTGGAATAATAAGTTAACTACAAAAAGGCATTCATTCGTTCCTCATCACTATTAGATTCAAACTTGTAATCGTTGATGTTGAACTCATGGTTAGGAGTAGTGGAAGTGAGATTGTAAAAGCTGAAAACATTGAGAGAGCATGTTGATGTGCAGATTGGCTAGAGATTCCAGGGTCGTTGATTCTGCTTCTGGTGGCAGCACCAGGGTTCTTTGTACACTCATTGAGAGACCACTTGGCTGGCGTCGTGATATGTTTGATCATTGGATGTTACCTTCTGCAAGAGCACATTCGCGCATCAGGTGGCTTCAGAAACTCTCTTACTCAAAGCCATGGCATTTCCAACACCCTCGGCATCGTCCTCCTCCTTGTCTTCCCTGTTTGGGCCATGCTTGCTCGCTTCTTCTAGCTCTAAATCCCACACGTTTGCTTCTCACTTCTTCATCAACCAAAAATTTT

mRNA sequence

GCCGAAAACCAATCTGATCCGAAACTTCCAACCATTTTGGAGTCTCTAACTCTGCTGAAAACAAGGAGATTGACCGCTTTACATTTTCCCATCACCCAGTTCCTTCGAAACTATAAGTATGCATCCAAGGTGTTTGAATAAATGCTTCACCGACTCTCACACTTTGAATACTCTTCTTCACTTCCCTGTAACATTTTCTCAAGCCAAATGGGGAGGATGCCATATTTGGCTCTCAATAGTGATCCGCTGATTGATGAGATTTTAAATTCTGATTTCAATGAGCTTAAAATTGCAGCCACCAGGCTTATTCATCATGCCGCCAAGCTCGGTGGAAAGGGCCTTGGGACTTCTTTTTTCAAATGGCTTGCCTCTTTTGCTGCCATTTACTTGTTGATTTTGGACCGCACAAACTGGAGAACAAACATGCTTACTTCGCTTCTTGTCCCTTACATTTTCTTCAGTCTTCCTGAAGGAATTTTCGACTTAGTGAGAGGGGATGCTGGGAAATGGATTGCCTTCGTTGCAGTGGTATTGAGGCTCTTCTTCCCACGACATTTCCCAGATTGGCTAGAGATTCCAGGGTCGTTGATTCTGCTTCTGGTGGCAGCACCAGGGTTCTTTGTACACTCATTGAGAGACCACTTGGCTGGCGTCGTGATATGTTTGATCATTGGATGTTACCTTCTGCAAGAGCACATTCGCGCATCAGGTGGCTTCAGAAACTCTCTTACTCAAAGCCATGGCATTTCCAACACCCTCGGCATCGTCCTCCTCCTTGTCTTCCCTGTTTGGGCCATGCTTGCTCGCTTCTTCTAGCTCTAAATCCCACACGTTTGCTTCTCACTTCTTCATCAACCAAAAATTTT

Coding sequence (CDS)

ATGCTTCACCGACTCTCACACTTTGAATACTCTTCTTCACTTCCCTGTAACATTTTCTCAAGCCAAATGGGGAGGATGCCATATTTGGCTCTCAATAGTGATCCGCTGATTGATGAGATTTTAAATTCTGATTTCAATGAGCTTAAAATTGCAGCCACCAGGCTTATTCATCATGCCGCCAAGCTCGGTGGAAAGGGCCTTGGGACTTCTTTTTTCAAATGGCTTGCCTCTTTTGCTGCCATTTACTTGTTGATTTTGGACCGCACAAACTGGAGAACAAACATGCTTACTTCGCTTCTTGTCCCTTACATTTTCTTCAGTCTTCCTGAAGGAATTTTCGACTTAGTGAGAGGGGATGCTGGGAAATGGATTGCCTTCGTTGCAGTGGTATTGAGGCTCTTCTTCCCACGACATTTCCCAGATTGGCTAGAGATTCCAGGGTCGTTGATTCTGCTTCTGGTGGCAGCACCAGGGTTCTTTGTACACTCATTGAGAGACCACTTGGCTGGCGTCGTGATATGTTTGATCATTGGATGTTACCTTCTGCAAGAGCACATTCGCGCATCAGGTGGCTTCAGAAACTCTCTTACTCAAAGCCATGGCATTTCCAACACCCTCGGCATCGTCCTCCTCCTTGTCTTCCCTGTTTGGGCCATGCTTGCTCGCTTCTTCTAG

Protein sequence

MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF

Homology

[Close]

BLAST of Carg05245-RA vs. NCBI nr
Match: KAG7027084.1 (Cold-regulated plasma membrane protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454.1 bits (1167), Expect = 6.8e-124
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60
           MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA
Sbjct: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60

Query: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120
           KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA
Sbjct: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120

Query: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180
           GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY
Sbjct: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180

Query: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 225
           LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF
Sbjct: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 224

[Close]

BLAST of Carg05245-RA vs. NCBI nr
Match: XP_022962765.1 (cold-regulated 413 plasma membrane protein 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 452.6 bits (1163), Expect = 2.0e-123
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60
           MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHH A
Sbjct: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHTA 60

Query: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120
           KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA
Sbjct: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120

Query: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180
           GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY
Sbjct: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180

Query: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 225
           LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF
Sbjct: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 224

[Close]

BLAST of Carg05245-RA vs. NCBI nr
Match: XP_023002994.1 (cold-regulated 413 plasma membrane protein 2 [Cucurbita maxima])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 221/224 (98.66%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60
           M+HRL HFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA
Sbjct: 1   MIHRLLHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60

Query: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120
           KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLP+GIFDLVRGDA
Sbjct: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPQGIFDLVRGDA 120

Query: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180
           GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY
Sbjct: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180

Query: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 225
           LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF
Sbjct: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 224

[Close]

BLAST of Carg05245-RA vs. NCBI nr
Match: XP_023517082.1 (cold-regulated 413 plasma membrane protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.6 bits (1119), Expect = 2.5e-118
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 9   EYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLG 68
           +YSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLG
Sbjct: 8   KYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLG 67

Query: 69  TSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVA 128
           TSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVA
Sbjct: 68  TSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVA 127

Query: 129 VVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRA 188
           VVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRA
Sbjct: 128 VVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRA 187

Query: 189 SGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 225
           SGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF
Sbjct: 188 SGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 223

[Close]

BLAST of Carg05245-RA vs. NCBI nr
Match: KAG6595068.1 (Cold-regulated 413 plasma membrane protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 409.1 bits (1050), Expect = 2.5e-110
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 23  MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY 82
           MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY
Sbjct: 1   MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY 60

Query: 83  LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW 142
           LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW
Sbjct: 61  LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW 120

Query: 143 LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI 202
           LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI
Sbjct: 121 LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI 180

Query: 203 SNTLGIVLLLVFPVWAMLARFF 225
           SNTLGIVLLLVFPVWAMLARFF
Sbjct: 181 SNTLGIVLLLVFPVWAMLARFF 202

[Close]

BLAST of Carg05245-RA vs. ExPASy Swiss-Prot
Match: Q9SVL6 (Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana OX=3702 GN=COR413PM2 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-75
Identity = 138/201 (68.66%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 23  MGRMPYLALNSDPL-IDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAI 82
           MGRM YLA+ +D +    ++NSD  ELK+AA +L    +KLGG G G SF K+LASFAAI
Sbjct: 1   MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFSDVSKLGGLGFGVSFLKFLASFAAI 60

Query: 83  YLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPD 142
           YLLILDRTNW+T MLTSLL+PYIF SLP  IF+ + GD GKWIAFVAVVLRLFFP+HFPD
Sbjct: 61  YLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPD 120

Query: 143 WLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHG 202
           WLE+PGSLILLLV +P F  H +R    G VI L IGCYLLQEHIRASGGFRNS TQ  G
Sbjct: 121 WLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRG 180

Query: 203 ISNTLGIVLLLVFPVWAMLAR 223
           +SNTLGI+LLLV+PVWA++ R
Sbjct: 181 VSNTLGIILLLVYPVWALIVR 201

[Close]

BLAST of Carg05245-RA vs. ExPASy Swiss-Prot
Match: Q9XIM7 (Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=COR413PM1 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.7e-64
Identity = 120/196 (61.22%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 26  MPYLALNSD-PLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIYLL 85
           MP  +L +D   +  ++ SDFNEL IAA  L  HA  L G G GTS  +W+AS AAIYLL
Sbjct: 1   MPMKSLRNDHGTLKAMIGSDFNELTIAAKNLATHAFTLTGLGFGTSVLEWVASIAAIYLL 60

Query: 86  ILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLE 145
           +LDRTNW+TNMLTSLL+PYIFFSLP  IF + RG+ GKWIAFVAVV++LFFP+H  ++LE
Sbjct: 61  VLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLE 120

Query: 146 IPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGISN 205
           +P +L+LL V AP     + RD   G+ ICL IGCYLLQEHIRASGGFRN+ T+++GISN
Sbjct: 121 LPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISN 180

Query: 206 TLGIVLLLVFPVWAML 221
           T+GI+ L+VFPVWA++
Sbjct: 181 TVGIICLVVFPVWALI 196

[Close]

BLAST of Carg05245-RA vs. ExPASy Swiss-Prot
Match: O23164 (Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=At4g37220 PE=2 SV=2)

HSP 1 Score: 245.0 bits (624), Expect = 8.2e-64
Identity = 114/202 (56.44%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 23  MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY 82
           MGR  +LA+ ++     ++NSD NE   AA +L+     LGG G GTS  +W AS  AIY
Sbjct: 1   MGRGEFLAMKTEENAANLINSDMNEFVAAAKKLVKDVGMLGGVGFGTSVLQWAASIFAIY 60

Query: 83  LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW 142
           LLILDRTNW+T MLT+LLVPYIFF+LP  IF    GD GKWIA +A+++RLFFP+ FP+W
Sbjct: 61  LLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEW 120

Query: 143 LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI 202
           LEIP +LIL++V +P     +LR+   G VICL+I CYL  EHI+ASGGF+NS TQ +GI
Sbjct: 121 LEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNGI 180

Query: 203 SNTLGIVLLLVFPVWAMLARFF 225
           SNT+GIV LLV+PVW +    F
Sbjct: 181 SNTIGIVALLVYPVWTIFFHIF 202

[Close]

BLAST of Carg05245-RA vs. ExPASy Swiss-Prot
Match: O64834 (Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana OX=3702 GN=At2g23680 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-34
Identity = 77/183 (42.08%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 46  NELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIYLLILDRTNWR--TNMLTSLLVPY 105
           NE++  A +LIH     G   + T F +WLAS  A++L+ILD+T W+   N++ SLL PY
Sbjct: 8   NEIQAVAGKLIH---SYGVPVMITLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPY 67

Query: 106 IFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHS 165
           +F SLP  IF ++R   GKWIA + V+LRLF P HF + LEIPG+ ILL+V  P      
Sbjct: 68  LFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAI 127

Query: 166 LRDHL--AGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLA 225
            RD L   G  +CL+   YL+ +H +A GG +NS TQ   ++ ++ + +L V+P+ +  A
Sbjct: 128 FRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWILFVYPILSSFA 187

[Close]

BLAST of Carg05245-RA vs. ExPASy Swiss-Prot
Match: F4I1G5 (Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=COR413IM2 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 73  KWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLR 132
           +W+++ + + L+        T +  S +VP      P GI   ++G+ G W AF+A++ R
Sbjct: 87  QWISTISCVALMFAR----GTGIHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTR 146

Query: 133 LFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGF 192
           LFF   FP  LE+P   +LL++ AP + V S+R    G ++ L I C+L  +H   +G  
Sbjct: 147 LFF--SFPVELELPFIALLLVIVAP-YQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTL 206

Query: 193 RNSLTQS 200
           + +  Q+
Sbjct: 207 QKAFDQN 206

[Close]

BLAST of Carg05245-RA vs. ExPASy TrEMBL
Match: A0A6J1HG04 (cold-regulated 413 plasma membrane protein 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463155 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 9.6e-124
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60
           MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHH A
Sbjct: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHTA 60

Query: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120
           KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA
Sbjct: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120

Query: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180
           GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY
Sbjct: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180

Query: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 225
           LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF
Sbjct: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 224

[Close]

BLAST of Carg05245-RA vs. ExPASy TrEMBL
Match: A0A6J1KS22 (cold-regulated 413 plasma membrane protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111496737 PE=3 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.2e-123
Identity = 221/224 (98.66%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MLHRLSHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60
           M+HRL HFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA
Sbjct: 1   MIHRLLHFEYSSSLPCNIFSSQMGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAA 60

Query: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDA 120
           KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLP+GIFDLVRGDA
Sbjct: 61  KLGGKGLGTSFFKWLASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSLPQGIFDLVRGDA 120

Query: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180
           GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY
Sbjct: 121 GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCY 180

Query: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 225
           LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF
Sbjct: 181 LLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLARFF 224

[Close]

BLAST of Carg05245-RA vs. ExPASy TrEMBL
Match: A0A0A0KFI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G488350 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.0e-101
Identity = 181/202 (89.60%), Postives = 195/202 (96.53%), Query Frame = 0


Query: 23  MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY 82
           MGRM YLALNSDPL++E++NSD +ELKIAATRL+ HA KLGGKGLGTSFFKWLASFAAIY
Sbjct: 1   MGRMAYLALNSDPLMEELINSDIHELKIAATRLLEHATKLGGKGLGTSFFKWLASFAAIY 60

Query: 83  LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW 142
           LLILDRTNWRTNMLTSLLVPYIFFSLP+GIF+L+RGDAGKWIAFVAVVLRLFFPRHFPDW
Sbjct: 61  LLILDRTNWRTNMLTSLLVPYIFFSLPQGIFNLLRGDAGKWIAFVAVVLRLFFPRHFPDW 120

Query: 143 LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI 202
           LEIPGSLILLLVA PGFF H+LRDH AGVVICLIIGCYLLQEHIRASGGFRNSLTQ+HGI
Sbjct: 121 LEIPGSLILLLVATPGFFAHTLRDHWAGVVICLIIGCYLLQEHIRASGGFRNSLTQTHGI 180

Query: 203 SNTLGIVLLLVFPVWAMLARFF 225
           SNT+GI+LLLVFPVWAM+ARFF
Sbjct: 181 SNTIGIILLLVFPVWAMVARFF 202

[Close]

BLAST of Carg05245-RA vs. ExPASy TrEMBL
Match: A0A6J1BUH1 (cold-regulated 413 plasma membrane protein 2-like OS=Momordica charantia OX=3673 GN=LOC111005887 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.0e-101
Identity = 181/202 (89.60%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 23  MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY 82
           MGRMPYLALNSDPL++E +NSD NELKIAATRL+ HA KLGGKGLGTSFFKWLASFAAIY
Sbjct: 1   MGRMPYLALNSDPLMEESINSDINELKIAATRLLEHATKLGGKGLGTSFFKWLASFAAIY 60

Query: 83  LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW 142
           LLILDRTNWRTNMLTSLLVPYIFFSLP+GIFDL+R DAGKWIAFVAVVLRLFFPRHFPDW
Sbjct: 61  LLILDRTNWRTNMLTSLLVPYIFFSLPQGIFDLLREDAGKWIAFVAVVLRLFFPRHFPDW 120

Query: 143 LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI 202
           LEIPGSLILL+VAAPGFF H+L+DH AGVVICL+IGCYLLQEHIRASGGFRNSLTQSHGI
Sbjct: 121 LEIPGSLILLVVAAPGFFAHTLKDHWAGVVICLVIGCYLLQEHIRASGGFRNSLTQSHGI 180

Query: 203 SNTLGIVLLLVFPVWAMLARFF 225
           SNT+GI+LL VFPVWAMLA FF
Sbjct: 181 SNTIGIILLFVFPVWAMLAHFF 202

[Close]

BLAST of Carg05245-RA vs. ExPASy TrEMBL
Match: A0A1S3B0J4 (cold-regulated 413 plasma membrane protein 2-like OS=Cucumis melo OX=3656 GN=LOC103484724 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.5e-100
Identity = 180/202 (89.11%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 23  MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY 82
           MGRM YLALNSDPL++E++NSD +ELKIAATRLI HA KLGGKGLGTSFFKWLASFAAIY
Sbjct: 1   MGRMAYLALNSDPLMEELINSDIHELKIAATRLIEHATKLGGKGLGTSFFKWLASFAAIY 60

Query: 83  LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW 142
           LLILDRTNWRTNMLTSLLVPYIFFSLP+GIF+L+RGD GKWIAFVAVVLRLFFPRHFPDW
Sbjct: 61  LLILDRTNWRTNMLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDW 120

Query: 143 LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI 202
           LEIPGSLILLLVA PGFF H+LRDH AGV+ICLIIGCYLLQEHIRASGGFRNS TQ+HGI
Sbjct: 121 LEIPGSLILLLVATPGFFAHTLRDHWAGVLICLIIGCYLLQEHIRASGGFRNSFTQTHGI 180

Query: 203 SNTLGIVLLLVFPVWAMLARFF 225
           SNT+GIVLLLVFPVWAM+ARFF
Sbjct: 181 SNTIGIVLLLVFPVWAMVARFF 202

[Close]

BLAST of Carg05245-RA vs. TAIR 10
Match: AT3G50830.1 (cold-regulated 413-plasma membrane 2 )

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-76
Identity = 138/201 (68.66%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 23  MGRMPYLALNSDPL-IDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAI 82
           MGRM YLA+ +D +    ++NSD  ELK+AA +L    +KLGG G G SF K+LASFAAI
Sbjct: 1   MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFSDVSKLGGLGFGVSFLKFLASFAAI 60

Query: 83  YLLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPD 142
           YLLILDRTNW+T MLTSLL+PYIF SLP  IF+ + GD GKWIAFVAVVLRLFFP+HFPD
Sbjct: 61  YLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPD 120

Query: 143 WLEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHG 202
           WLE+PGSLILLLV +P F  H +R    G VI L IGCYLLQEHIRASGGFRNS TQ  G
Sbjct: 121 WLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRG 180

Query: 203 ISNTLGIVLLLVFPVWAMLAR 223
           +SNTLGI+LLLV+PVWA++ R
Sbjct: 181 VSNTLGIILLLVYPVWALIVR 201

[Close]

BLAST of Carg05245-RA vs. TAIR 10
Match: AT2G15970.1 (cold regulated 413 plasma membrane 1 )

HSP 1 Score: 246.1 bits (627), Expect = 2.6e-65
Identity = 120/196 (61.22%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 26  MPYLALNSD-PLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIYLL 85
           MP  +L +D   +  ++ SDFNEL IAA  L  HA  L G G GTS  +W+AS AAIYLL
Sbjct: 1   MPMKSLRNDHGTLKAMIGSDFNELTIAAKNLATHAFTLTGLGFGTSVLEWVASIAAIYLL 60

Query: 86  ILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLE 145
           +LDRTNW+TNMLTSLL+PYIFFSLP  IF + RG+ GKWIAFVAVV++LFFP+H  ++LE
Sbjct: 61  VLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLE 120

Query: 146 IPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGISN 205
           +P +L+LL V AP     + RD   G+ ICL IGCYLLQEHIRASGGFRN+ T+++GISN
Sbjct: 121 LPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISN 180

Query: 206 TLGIVLLLVFPVWAML 221
           T+GI+ L+VFPVWA++
Sbjct: 181 TVGIICLVVFPVWALI 196

[Close]

BLAST of Carg05245-RA vs. TAIR 10
Match: AT4G37220.1 (Cold acclimation protein WCOR413 family )

HSP 1 Score: 245.0 bits (624), Expect = 5.8e-65
Identity = 114/202 (56.44%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 23  MGRMPYLALNSDPLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIY 82
           MGR  +LA+ ++     ++NSD NE   AA +L+     LGG G GTS  +W AS  AIY
Sbjct: 1   MGRGEFLAMKTEENAANLINSDMNEFVAAAKKLVKDVGMLGGVGFGTSVLQWAASIFAIY 60

Query: 83  LLILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDW 142
           LLILDRTNW+T MLT+LLVPYIFF+LP  IF    GD GKWIA +A+++RLFFP+ FP+W
Sbjct: 61  LLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEW 120

Query: 143 LEIPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGI 202
           LEIP +LIL++V +P     +LR+   G VICL+I CYL  EHI+ASGGF+NS TQ +GI
Sbjct: 121 LEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNGI 180

Query: 203 SNTLGIVLLLVFPVWAMLARFF 225
           SNT+GIV LLV+PVW +    F
Sbjct: 181 SNTIGIVALLVYPVWTIFFHIF 202

[Close]

BLAST of Carg05245-RA vs. TAIR 10
Match: AT2G15970.2 (cold regulated 413 plasma membrane 1 )

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-44
Identity = 89/154 (57.79%), Postives = 111/154 (72.08%), Query Frame = 0


Query: 26  MPYLALNSD-PLIDEILNSDFNELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIYLL 85
           MP  +L +D   +  ++ SDFNEL IAA  L  HA  L G G GTS  +W+AS AAIYLL
Sbjct: 1   MPMKSLRNDHGTLKAMIGSDFNELTIAAKNLATHAFTLTGLGFGTSVLEWVASIAAIYLL 60

Query: 86  ILDRTNWRTNMLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLE 145
           +LDRTNW+TNMLTSLL+PYIFFSLP  IF + RG+ GKWIAFVAVV++LFFP+H  ++LE
Sbjct: 61  VLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLE 120

Query: 146 IPGSLILLLVAAPGFFVHSLRDHLAGVVICLIIG 179
           +P +L+LL V AP     + RD   G+ ICL IG
Sbjct: 121 LPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIG 154

[Close]

BLAST of Carg05245-RA vs. TAIR 10
Match: AT2G23680.1 (Cold acclimation protein WCOR413 family )

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 77/183 (42.08%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 46  NELKIAATRLIHHAAKLGGKGLGTSFFKWLASFAAIYLLILDRTNWR--TNMLTSLLVPY 105
           NE++  A +LIH     G   + T F +WLAS  A++L+ILD+T W+   N++ SLL PY
Sbjct: 8   NEIQAVAGKLIH---SYGVPVMITLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPY 67

Query: 106 IFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVAAPGFFVHS 165
           +F SLP  IF ++R   GKWIA + V+LRLF P HF + LEIPG+ ILL+V  P      
Sbjct: 68  LFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAI 127

Query: 166 LRDHL--AGVVICLIIGCYLLQEHIRASGGFRNSLTQSHGISNTLGIVLLLVFPVWAMLA 225
            RD L   G  +CL+   YL+ +H +A GG +NS TQ   ++ ++ + +L V+P+ +  A
Sbjct: 128 FRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWILFVYPILSSFA 187

The following BLAST results are available for this feature:

BLAST of Carg05245-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027084.1	6.8e-124	100.00	Cold-regulated plasma membrane protein 2 [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022962765.1	2.0e-123	99.55	cold-regulated 413 plasma membrane protein 2 isoform X1 [Cucurbita moschata]	[more]
XP_023002994.1	1.3e-122	98.66	cold-regulated 413 plasma membrane protein 2 [Cucurbita maxima]	[more]
XP_023517082.1	2.5e-118	99.54	cold-regulated 413 plasma membrane protein 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6595068.1	2.5e-110	100.00	Cold-regulated 413 plasma membrane protein 2, partial [Cucurbita argyrosperma su...	[more]

BLAST of Carg05245-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVL6	2.7e-75	68.66	Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9XIM7	3.7e-64	61.22	Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O23164	8.2e-64	56.44	Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O64834	2.3e-34	42.08	Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4I1G5	1.8e-10	30.71	Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thalia...	[more]

BLAST of Carg05245-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HG04	9.6e-124	99.55	cold-regulated 413 plasma membrane protein 2 isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1KS22	6.2e-123	98.66	cold-regulated 413 plasma membrane protein 2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0KFI4	3.0e-101	89.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G488350 PE=3 SV=1	[more]
A0A6J1BUH1	3.0e-101	89.60	cold-regulated 413 plasma membrane protein 2-like OS=Momordica charantia OX=3673...	[more]
A0A1S3B0J4	2.5e-100	89.11	cold-regulated 413 plasma membrane protein 2-like OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Carg05245-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50830.1	1.9e-76	68.66	cold-regulated 413-plasma membrane 2	[more]
AT2G15970.1	2.6e-65	61.22	cold regulated 413 plasma membrane 1	[more]
AT4G37220.1	5.8e-65	56.44	Cold acclimation protein WCOR413 family	[more]
AT2G15970.2	1.5e-44	57.79	cold regulated 413 plasma membrane 1	[more]
AT2G23680.1	1.7e-35	42.08	Cold acclimation protein WCOR413 family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008892	Cold-regulated 413 protein	PFAM	PF05562	WCOR413	coord: 38..211 e-value: 5.6E-86 score: 287.2
IPR008892	Cold-regulated 413 protein	PANTHER	PTHR33596	COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2	coord: 23..222
None	No IPR available	PANTHER	PTHR33596:SF20	COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2-LIKE	coord: 23..222

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05245	Carg05245	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05245-RA:1	Carg05245-RA:1	exon
Carg05245-RA:2	Carg05245-RA:2	exon
Carg05245-RA:3	Carg05245-RA:3	exon
Carg05245-RA:4	Carg05245-RA:4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05245-RA:five_prime_utr	Carg05245-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05245-RA:cds	Carg05245-RA:cds	CDS
Carg05245-RA:cds	Carg05245-RA:cds_2	CDS
Carg05245-RA:cds	Carg05245-RA:cds_3	CDS
Carg05245-RA:cds	Carg05245-RA:cds_4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05245-RA:three_prime_utr	Carg05245-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05245-RA	Carg05245-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane