Carg04136-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04136-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 7852427 .. 7856099 (+)
Sequence length621
RNA-Seq ExpressionCarg04136-RA
SyntenyCarg04136-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAGCCTTTTGATCGTGGATTTGGAGTCTTTGATTTGTCTATGCTGTTTTCTTGGTATAATTACACCGATAAATTGAGCATTCTGGAATGGTGCTGTGACATTGTAGCATTTTTATGCTAAGTTATTTCTTTACTCTACTATGACTTGAAAGTTGAATAATTCACTAACCATAATCTTGTAGGAATATGCATTCACGACGGGGGGATTCCATGGAAAGTATATGGAAATAAAAAATCTTAGAAAATCTACACATTTGAGATTACTTGTCAGTTTGGAGAGGCTATGACATTATAGGGATTATAGTTTGGAGAGGCTATGACATTATAGGGATTGTGTGTAACAGTCCAAGCCTACCGCTAGCGGATATTGTCCTTTTAGGCTTTCTCTTTCAAGTTTCCCCTCAAGGTTTTTAAAATGCATCTGTTACGGGAAGATTTCCACATCATTACGAAGAATGCTTCGTTCTCCTCCCTAACCTATGTGGGATCTCGCAGTCAGAACAATTTTTATTGGCATTCTCATAGCAATATTACTTTCAAGATCTTTTTTGGTAATGAAAAGATGGGAACAAAGAGGAGTTCCTACGGAAGTTGGTGGGGATCCAGGTTATGCTGTGAGCAATGCTCGAGTGACTGAACTTTCTCATGTTCGTTGGAAAGCGGAGACAACCATAGCAGCATTATTTTAGCAATCACGTAAAAAACATTCAAAAAATATATTCCTTGGCTCAAAAAAGTTGATGTCCAAGGAATTTGTCATTGCTACTGATGGTAGGAAGTTTGAAAAACTTAACTTAGGTGAATGTGAATGGCAGGCTTATGGAGGAAGTGTTTGATCGTGCTTCCAACTTTGCTTCTGGGCTTGTAAGGTTTAGCCATGATGTTGATACTCGTGTTGCCGTAGGAAACTCGTGCTGAGTAGTTTACTGCCTTTCAGGTTATCTTATTTGTTGTGCTTCAACATTTTTTCTCTACAGCTCTACCCTTGGTTTTAACCTTCAGAGCTTTAATTCCTTGTTATATTTTTAGAACAATTCCGAATTACAGTTGATCTCTTTCAGGGATGCTTCAGACAGGACATTACTGTGGTTAACAATATGCTTCTCTTGGTGAGGAATCCCTAATCCACTCTCTTAATTAGGTTCATCCAATAATCTTCTTTGTTGCATTCTTCAGTTATTGTAGCTGTAGTATGGACTTCTGCATTGTAATTACAATCTTGAAAGTACCCGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCTTTACAAGTGTGTGTGGAAACCTCTCACTAGTAGACGCGTTTTAAAAACCTTGAGGGGAAGGCTGAAAGGAAAAGCCCAAAGAGGACAATATCTGGTAGCGGTGGGTTTAGGGTCGTTATAAATGGTATAAGAGCCAGACATTGGGTGATGTCCTAGCGAAGACGTTGGGCCTTGAAGGGGGGTGGATTGTGAGATACCACATCGATTAAACAGAGGAACTAGTGCCAACAAGGACGCTGGGCCCTGGAGGGGGGTGGACACTGGGCGGTGTGCCAACGAGGACGCTGAGCTCTGAAGAGAGGTGGATTATGAGATCCCACATCTATTGGAGAGAGGAATGAGTGTCAGTGAGGACGTTGGGCCCCAAAGAGGGGTGAATTGCGAGGTCCCACATCGGTTGGAGAGGAGAACAAAACATTCTTTATAAGTGTGTGAAAACCTCTCCCTAACAGATGCATTTTAAAATCCTTGATGGGAAGTCCGAAAGGACCTAAAGAGGACAATATTTGTTAGCGGTGGGCTTAGGGTCGTTCTTTCATTCATTTAACGCACCTTCTATAACTGATATGCCATATTGACGAGGACTAGCATACACGATCTGCTGGTTACTTAAAGAACCCTGAAAAGACTAACAAGGTCTACAAGGTAACTTTTTTACCATATTTTCATTAGATTCTGGATTTCTGCAGAAGATCTCAAACTTTCTGCTTACAATAGAATGGTGAGAAGTGCATGTGCTAGTTTTACTTGGGAGATATAGGAACATTTCATCATGATGGATGCCTTGAGATCATGGATAGGACGAAGGATATCGTTAAACTTCAGCATGGAGAATATATATCCCAAGGGAAGGTGAGGTTTTAAACTTCAAGTTTTGCTCCTAACATATTGGGTTTAAATTCTTCTTCTGTTCATATAGGCTGAGGCAGCCCTATTGTCGAGCAAGTACGTGGATAATGTTATTGTGGTATATGCATATCCCTTTCACAATTATTGTGTACCTCTTGTTGTCACTTTGCGTCCAGCCCTTGAGAAGTGGGCCAATGAAGCTGGCATCAATTATGGGGACTTTTCTCAGCTATGTGAAAATGGTGAAACCATTAGTGAGTTTCCAAGGTTTGCAAATCCTACTCTTATCTATTGAAAGGCAGAAGAATAATAGAAACAGTCCAATGAAAACAGAAAAGATAAGATAATCTGTTCCATAGGTTATTGCATAATTCAATTGGCAAGGCACTTTTGTAATTCATATGTATAAATTTTCTGTTAGGAACCACGAACCTCCACAATGGTATGATATTTGTCCACTTTGATCATAAGCACTCATAGCTTTACTTTCAAAAGGCTTCATACCAATGATCAACCTCTTAATTAGCTGATGTGGGTCTCTTCTCTCAACAATCCTCCCCTCAAATAAAGTATACCATAGAGTCTCTTCTGAAGCCTATAGAGCCCTCGAACAGTCTCCACTTAATCGAGACTCAACTCCTTTCTCTGGAGCCCTCGAACAAAGTACACCCTTTGTTCGATACTTGAGTCACTTTTGTTTGCACCTTCGAGACTACTAACTTCTTTGTTCGACACTTGAGGATTCGATTAGCACGACTAAGTTAAGGGTATAACTTTAATACCATGTTAGGAATCACAAATCTCTACAATAATATGATATTATCCACTTTGAGAATAAACTCTCATGGTTTTGCTTTTGGTTTCCCCAAAAAGCCTTGTAGGAGATGTATTCATTACTTATAAATCCACGATCATCCTCTTAATTAGCCAATGTATGACTCCCTTCCAACAATCCTCAACCGACTATCGATATTCCTTCATTAGTAAGATTAGCTTGAATCTTTTGGTGGACTCTGATTATTCATCTTCATTCTTTTAACTTCAGAATGCAAATTTAAATGGCTATTACTTTGTGTATGCAGAATGAGATCCCACTTCTGAACAATGCATTATTTTTAATAACTTTACAGATAGCAAAAGATGCAAAGTTACAAAAAGTTCCTGGCAAAGTTATGTTGGTACAAGATCCACGGACTCCAAAGTCAGGAGGAGCTGCTGCCTCTGCTTTAAAGCTAATAAGGGAACAAGGCAAGGCAAAAATTCAAGAACGAACTCGAACAGCTATACAGGTAATTAAATACTGCCTAGTTTTTCACTTTAGTACACAGCACATGGATCTCCACGTACTTAATTAGGTTTACCAATAACACTCCTTGCATGAAAGACACTCATCTTTATGCTAAAAGTATATATTTCTTAGTTGAGCACAGAGCACGGGACGACTCGAATTGATAGCCATTTGATTTTGGTTTTTGATCCTTGAAAATTGTGCTCGATTGCTCGTATCTCATAAATCTTTACGATGTTTTTCATCTTTTTTTCAAGATAATA

mRNA sequence

TGAAGCCTTTTGATCGTGGATTTGGAGTCTTTGATTTGTCTATGCTGTTTTCTTGGCTTATGGAGGAAGTGTTTGATCGTGCTTCCAACTTTGCTTCTGGGCTTGGATGCTTCAGACAGGACATTACTGTGGTTAACAATATGCTTCTCTTGGCTGAGGCAGCCCTATTGTCGAGCAAGTACGTGGATAATGTTATTGTGATAGCAAAAGATGCAAAGTTACAAAAAGTTCCTGGCAAAGTTATGTTGGTACAAGATCCACGGACTCCAAAGTCAGGAGGAGCTGCTGCCTCTGCTTTAAAGCTAATAAGGGAACAAGGCAAGGCAAAAATTCAAGAACGAACTCGAACAGCTATACAGGTAATTAAATACTGCCTAGTTTTTCACTTTAGTACACAGCACATGGATCTCCACGTACTTAATTAGGTTTACCAATAACACTCCTTGCATGAAAGACACTCATCTTTATGCTAAAAGTATATATTTCTTAGTTGAGCACAGAGCACGGGACGACTCGAATTGATAGCCATTTGATTTTGGTTTTTGATCCTTGAAAATTGTGCTCGATTGCTCGTATCTCATAAATCTTTACGATGTTTTTCATCTTTTTTTCAAGATAATA

Coding sequence (CDS)

ATGCTGTTTTCTTGGCTTATGGAGGAAGTGTTTGATCGTGCTTCCAACTTTGCTTCTGGGCTTGGATGCTTCAGACAGGACATTACTGTGGTTAACAATATGCTTCTCTTGGCTGAGGCAGCCCTATTGTCGAGCAAGTACGTGGATAATGTTATTGTGATAGCAAAAGATGCAAAGTTACAAAAAGTTCCTGGCAAAGTTATGTTGGTACAAGATCCACGGACTCCAAAGTCAGGAGGAGCTGCTGCCTCTGCTTTAAAGCTAATAAGGGAACAAGGCAAGGCAAAAATTCAAGAACGAACTCGAACAGCTATACAGGTAATTAAATACTGCCTAGTTTTTCACTTTAGTACACAGCACATGGATCTCCACGTACTTAATTAG

Protein sequence

MLFSWLMEEVFDRASNFASGLGCFRQDITVVNNMLLLAEAALLSSKYVDNVIVIAKDAKLQKVPGKVMLVQDPRTPKSGGAAASALKLIREQGKAKIQERTRTAIQVIKYCLVFHFSTQHMDLHVLN
Homology
[Close]
BLAST of Carg04136-RA vs. NCBI nr
Match: KAG7011852.1 (hypothetical protein SDJN02_26758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MLFSWLMEEVFDRASNFASGLGCFRQDITVVNNMLLLAEAALLSSKYVDNVIVIAKDAKL 60
           MLFSWLMEEVFDRASNFASGLGCFRQDITVVNNMLLLAEAALLSSKYVDNVIVIAKDAKL
Sbjct: 1   MLFSWLMEEVFDRASNFASGLGCFRQDITVVNNMLLLAEAALLSSKYVDNVIVIAKDAKL 60

Query: 61  QKVPGKVMLVQDPRTPKSGGAAASALKLIREQGKAKIQERTRTAIQVIKYCLVFHFSTQH 120
           QKVPGKVMLVQDPRTPKSGGAAASALKLIREQGKAKIQERTRTAIQVIKYCLVFHFSTQH
Sbjct: 61  QKVPGKVMLVQDPRTPKSGGAAASALKLIREQGKAKIQERTRTAIQVIKYCLVFHFSTQH 120

Query: 121 MDLHVLN 128
           MDLHVLN
Sbjct: 121 MDLHVLN 127

[Close]
BLAST of Carg04136-RA vs. NCBI nr
Match: KAG6572214.1 (Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 6   LMEEVFDRASNFASGLGCFRQDITVVNNMLLL 38
           LMEEVFDRASNFASGLGCFRQDITVVNNMLLL
Sbjct: 94  LMEEVFDRASNFASGLGCFRQDITVVNNMLLL 125

The following BLAST results are available for this feature:
BLAST of Carg04136-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011852.12.1e-61100.00hypothetical protein SDJN02_26758 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6572214.11.7e-07100.00Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferas... [more]
BLAST of Carg04136-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04136-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04136-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg04136Carg04136gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg04136-RA:1Carg04136-RA:1exon
Carg04136-RA:2Carg04136-RA:2exon
Carg04136-RA:3Carg04136-RA:3exon
Carg04136-RA:4Carg04136-RA:4exon
Carg04136-RA:5Carg04136-RA:5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg04136-RA:five_prime_utrCarg04136-RA:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg04136-RA:cdsCarg04136-RA:cdsCDS
Carg04136-RA:cdsCarg04136-RA:cds_2CDS
Carg04136-RA:cdsCarg04136-RA:cds_3CDS
Carg04136-RA:cdsCarg04136-RA:cds_4CDS
Carg04136-RA:cdsCarg04136-RA:cds_5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg04136-RA:three_prime_utrCarg04136-RA:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg04136-RACarg04136-RA-proteinpolypeptide