Carg03773-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03773-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein indeterminate-domain 9-like
Location	Carg_Chr14: 859709 .. 861129 (+)
Sequence length	927
RNA-Seq Expression	Carg03773-RA
Synteny	Carg03773-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGACAGAAGTAATTAATGCAGATTATGTGTTTGGATTGTAACAAAAATGACAAAGATTGGAACATTAAATGTTGGATTTTTGTTGTTCCTCGTACAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCATTAGCTGAAGAAAGTGCAAGAATCACGACAGTTTCAGCAACAAATATTCTGAATAATCTCAGAAATGATTCAGTTCTTCTTCATCAACAAGATCAATCTTTGATTGATCTTCAGACCAATAATCTTCAAACACTTGGAGATGTTCCTGCCCTTTCCCAATTCACTCACTCTGAACATTTTCTAAGAGACTTTGAAGATCATCAACACAAGAACAGATCTCCTTTCTCACTTTGGTTGAACAATAACAACAATATTTCCAACTTTTATGGAGCTTCCTCTTCTTCTTCCAATCTTTTTGGATCCATAGCCGAAACTGGGCTTTCGATGTTGCCCGTGTTCGAGAAGGAAGATGTCGAGAAGAAGGGAAGTTTGTCGAAAGCTACGTCGTCGGCAGCTGCACTGTTGTCGGGTCAGTCGTCGTCCGTTGTTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCACCAACAATAATTCCCCGCTCATCGATGCCGGTGCTTTCGGAGTGATGAACTCTTCGTCTTTGTCTTCGTCCTCGTCCTCCAATGCTGTAAGCTTGAACTCTTTGAACAAATCTAGAAGCATGCCAATGGCTGACTCGGTTCAGATGGTCGGTACCAACTCCGATTTAAGCTCGAATATTCTCAGCCAGCTTCTAATGCCACTCAACAACGGTAAATTTAATCTTTTATTCATATTCTCAACGCTCTTTTCCGCTCTAGATTTGGAAATTACCGCCATTAATCGAGGATTATGAAATACTTAACCAATTAAATTACATTCAAATTTGTAAACCGAATCTTTTATTCATATTGTTAACGTAGGTAACAACAGTATGAAAAGTAACGACCAAACGAGAGACTTCCTCGGTGTCGGAGGAAACGGAGAAGCACCCCGGCCACCGTTCCTTCCACCAGAGCTGGCAAAATTCACCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAAATTCCATCATCAAAACCTTAATCAAATCGAAGGTGAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCATTTTTATGTAAGAAATTAGACCGTCAAAAACCAAGATGCATTCACAGATTTTTACTGTGCAGGGCGGCGGAAAGGGTCAGGCGGCGGCGACGGCAGTGGCCACCGGTGAATGGTTAAATTGACAGTTTCAGAACGTAGTAAAAAGGGCCGTGCATGTAAACCTTTTCTTCTTGTAATTTACTATGCTGT

mRNA sequence

ATGTTAAAGACAGAAACCAATAATCTTCAAACACTTGGAGATGTTCCTGCCCTTTCCCAATTCACTCACTCTGAACATTTTCTAAGAGACTTTGAAGATCATCAACACAAGAACAGATCTCCTTTCTCACTTTGGTTGAACAATAACAACAATATTTCCAACTTTTATGGAGCTTCCTCTTCTTCTTCCAATCTTTTTGGATCCATAGCCGAAACTGGGCTTTCGATGTTGCCCGTGTTCGAGAAGGAAGATGTCGAGAAGAAGGGAAGTTTGTCGAAAGCTACGTCGTCGGCAGCTGCACTGTTGTCGGGTCAGTCGTCGTCCGTTGTTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCACCAACAATAATTCCCCGCTCATCGATGCCGGTGCTTTCGGAGTGATGAACTCTTCGTCTTTGTCTTCGTCCTCGTCCTCCAATGCTGTAAGCTTGAACTCTTTGAACAAATCTAGAAGCATGCCAATGGCTGACTCGGTTCAGATGGTCGGTACCAACTCCGATTTAAGCTCGAATATTCTCAGCCAGCTTCTAATGCCACTCAACAACGGTAACAACAGTATGAAAAGTAACGACCAAACGAGAGACTTCCTCGGTGTCGGAGGAAACGGAGAAGCACCCCGGCCACCGTTCCTTCCACCAGAGCTGGCAAAATTCACCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAAATTCCATCATCAAAACCTTAATCAAATCGAAGGGCGGCGGAAAGGGTCAGGCGGCGGCGACGGCAGTGGCCACCGGTGAATGGTTAAATTGACAGTTTCAGAACGTAGTAAAAAGGGCCGTGCATGTAAACCTTTTCTTCTTGTAATTTACTATGCTGT

Coding sequence (CDS)

ATGTTAAAGACAGAAACCAATAATCTTCAAACACTTGGAGATGTTCCTGCCCTTTCCCAATTCACTCACTCTGAACATTTTCTAAGAGACTTTGAAGATCATCAACACAAGAACAGATCTCCTTTCTCACTTTGGTTGAACAATAACAACAATATTTCCAACTTTTATGGAGCTTCCTCTTCTTCTTCCAATCTTTTTGGATCCATAGCCGAAACTGGGCTTTCGATGTTGCCCGTGTTCGAGAAGGAAGATGTCGAGAAGAAGGGAAGTTTGTCGAAAGCTACGTCGTCGGCAGCTGCACTGTTGTCGGGTCAGTCGTCGTCCGTTGTTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCACCAACAATAATTCCCCGCTCATCGATGCCGGTGCTTTCGGAGTGATGAACTCTTCGTCTTTGTCTTCGTCCTCGTCCTCCAATGCTGTAAGCTTGAACTCTTTGAACAAATCTAGAAGCATGCCAATGGCTGACTCGGTTCAGATGGTCGGTACCAACTCCGATTTAAGCTCGAATATTCTCAGCCAGCTTCTAATGCCACTCAACAACGGTAACAACAGTATGAAAAGTAACGACCAAACGAGAGACTTCCTCGGTGTCGGAGGAAACGGAGAAGCACCCCGGCCACCGTTCCTTCCACCAGAGCTGGCAAAATTCACCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA

Protein sequence

MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASSSSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATALLQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSVQMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFTAINSTMGLSQFAANH

Homology

[Close]

BLAST of Carg03773-RA vs. NCBI nr
Match: KAG7017355.1 (hypothetical protein SDJN02_19220, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 465.3 bits (1196), Expect = 3.4e-127
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60
           MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS
Sbjct: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60

Query: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120
           SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL
Sbjct: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120

Query: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180
           LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV
Sbjct: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180

Query: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240
           QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT
Sbjct: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240

Query: 241 AINSTMGLSQFAANH 256
           AINSTMGLSQFAANH
Sbjct: 241 AINSTMGLSQFAANH 255

[Close]

BLAST of Carg03773-RA vs. NCBI nr
Match: KAG6580599.1 (Zinc finger protein BALDIBIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453.8 bits (1166), Expect = 1.0e-123
Identity = 248/255 (97.25%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60
           ++  +TNNLQTLGDVPALSQFTHS+HFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS
Sbjct: 229 LIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 288

Query: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120
           SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL
Sbjct: 289 SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 348

Query: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180
           LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV
Sbjct: 349 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 408

Query: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240
           QMV TNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT
Sbjct: 409 QMVSTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 468

Query: 241 AINSTMGLSQFAANH 256
           AINSTMGLSQFAANH
Sbjct: 469 AINSTMGLSQFAANH 483

[Close]

BLAST of Carg03773-RA vs. NCBI nr
Match: XP_022934107.1 (protein indeterminate-domain 9-like [Cucurbita moschata] >XP_022934108.1 protein indeterminate-domain 9-like [Cucurbita moschata])

HSP 1 Score: 448.0 bits (1151), Expect = 5.6e-122
Identity = 245/255 (96.08%), Postives = 251/255 (98.43%), Query Frame = 0


Query: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60
           ++  +TNNLQTLGDVPALSQFTHS+HFLRDFEDHQHKNRSPFSLWLNN+NNISNFYGASS
Sbjct: 227 LIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNSNNISNFYGASS 286

Query: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120
           SSSNLFGSIAETGLSMLPVFEKEDVE+KGSL KATSSAAALLSGQSSSVVSSSPMSATAL
Sbjct: 287 SSSNLFGSIAETGLSMLPVFEKEDVERKGSLPKATSSAAALLSGQSSSVVSSSPMSATAL 346

Query: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180
           LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSM MADSV
Sbjct: 347 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMSMADSV 406

Query: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240
           QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT
Sbjct: 407 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 466

Query: 241 AINSTMGLSQFAANH 256
           AINSTMGLSQFAANH
Sbjct: 467 AINSTMGLSQFAANH 481

[Close]

BLAST of Carg03773-RA vs. NCBI nr
Match: XP_023526465.1 (protein indeterminate-domain 9-like [Cucurbita pepo subsp. pepo] >XP_023526466.1 protein indeterminate-domain 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 447.6 bits (1150), Expect = 7.3e-122
Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60
           ++  +TNNLQTLGDVPALSQFTHS+HFLRDFEDHQHKNRSPFSLWLNNNNNISNFYG SS
Sbjct: 229 LIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGPSS 288

Query: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120
           SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL
Sbjct: 289 SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 348

Query: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180
           LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSM MADSV
Sbjct: 349 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMTMADSV 408

Query: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240
           QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAP+PPFLPPELAKF 
Sbjct: 409 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPQPPFLPPELAKFA 468

Query: 241 AINSTMGLSQFAANH 256
           AINSTMGLSQFAANH
Sbjct: 469 AINSTMGLSQFAANH 483

[Close]

BLAST of Carg03773-RA vs. NCBI nr
Match: XP_022984080.1 (protein indeterminate-domain 9-like [Cucurbita maxima] >XP_022984081.1 protein indeterminate-domain 9-like [Cucurbita maxima])

HSP 1 Score: 441.4 bits (1134), Expect = 5.2e-120
Identity = 243/255 (95.29%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60
           ++  +TNNLQTLGDVPALSQFTHS+HFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS
Sbjct: 227 LIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 286

Query: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120
           SSSNLFGSIAETGLSMLPVFEKEDVEKKGS SKATSSAAALLSGQSSSVVSSSPMSATAL
Sbjct: 287 SSSNLFGSIAETGLSMLPVFEKEDVEKKGSSSKATSSAAALLSGQSSSVVSSSPMSATAL 346

Query: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180
           LQKAALMGSTRSSTNNNS LIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSM MADSV
Sbjct: 347 LQKAALMGSTRSSTNNNSLLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMTMADSV 406

Query: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240
           QMVG+NSDLSSNILSQLLMPLNNGNN MKSNDQTRDFLGVGGNGEAPRPPFLPPELAKF 
Sbjct: 407 QMVGSNSDLSSNILSQLLMPLNNGNNRMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFA 466

Query: 241 AINSTMGLSQFAANH 256
           AINSTMGLSQFAANH
Sbjct: 467 AINSTMGLSQFAANH 481

[Close]

BLAST of Carg03773-RA vs. ExPASy TrEMBL
Match: A0A6J1F1R6 (protein indeterminate-domain 9-like OS=Cucurbita moschata OX=3662 GN=LOC111441380 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.7e-122
Identity = 245/255 (96.08%), Postives = 251/255 (98.43%), Query Frame = 0


Query: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60
           ++  +TNNLQTLGDVPALSQFTHS+HFLRDFEDHQHKNRSPFSLWLNN+NNISNFYGASS
Sbjct: 227 LIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNSNNISNFYGASS 286

Query: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120
           SSSNLFGSIAETGLSMLPVFEKEDVE+KGSL KATSSAAALLSGQSSSVVSSSPMSATAL
Sbjct: 287 SSSNLFGSIAETGLSMLPVFEKEDVERKGSLPKATSSAAALLSGQSSSVVSSSPMSATAL 346

Query: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180
           LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSM MADSV
Sbjct: 347 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMSMADSV 406

Query: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240
           QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT
Sbjct: 407 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 466

Query: 241 AINSTMGLSQFAANH 256
           AINSTMGLSQFAANH
Sbjct: 467 AINSTMGLSQFAANH 481

[Close]

BLAST of Carg03773-RA vs. ExPASy TrEMBL
Match: A0A6J1J479 (protein indeterminate-domain 9-like OS=Cucurbita maxima OX=3661 GN=LOC111482501 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.5e-120
Identity = 243/255 (95.29%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MLKTETNNLQTLGDVPALSQFTHSEHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 60
           ++  +TNNLQTLGDVPALSQFTHS+HFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS
Sbjct: 227 LIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGASS 286

Query: 61  SSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATAL 120
           SSSNLFGSIAETGLSMLPVFEKEDVEKKGS SKATSSAAALLSGQSSSVVSSSPMSATAL
Sbjct: 287 SSSNLFGSIAETGLSMLPVFEKEDVEKKGSSSKATSSAAALLSGQSSSVVSSSPMSATAL 346

Query: 121 LQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMPMADSV 180
           LQKAALMGSTRSSTNNNS LIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSM MADSV
Sbjct: 347 LQKAALMGSTRSSTNNNSLLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMTMADSV 406

Query: 181 QMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFT 240
           QMVG+NSDLSSNILSQLLMPLNNGNN MKSNDQTRDFLGVGGNGEAPRPPFLPPELAKF 
Sbjct: 407 QMVGSNSDLSSNILSQLLMPLNNGNNRMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFA 466

Query: 241 AINSTMGLSQFAANH 256
           AINSTMGLSQFAANH
Sbjct: 467 AINSTMGLSQFAANH 481

[Close]

BLAST of Carg03773-RA vs. ExPASy TrEMBL
Match: A0A5D3DNM0 (Protein indeterminate-domain 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002470 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 7.1e-91
Identity = 213/263 (80.99%), Postives = 226/263 (85.93%), Query Frame = 0


Query: 10  QTLGDVPALSQFT-HSEHFLRDFEDHQHKNRSPFSLWL---------NNNNNISNFYGAS 69
           Q+LGD+  LSQFT HS+HFLRDFEDHQ KNRSP SLWL         NNNNNISNF+GAS
Sbjct: 237 QSLGDISGLSQFTNHSDHFLRDFEDHQQKNRSPLSLWLNQASAENAINNNNNISNFFGAS 296

Query: 70  SSSSNLFGSIAETGLSMLPVFEKEDVEKKGS---LSKAT-SSAAALLSGQSS-SVVSSSP 129
           SSSSNLFGSI E GLSMLPV EKEDVE KGS    SKAT SSAAALLSGQSS SVVSSSP
Sbjct: 297 SSSSNLFGSITENGLSMLPVMEKEDVENKGSNNNFSKATSSSAAALLSGQSSQSVVSSSP 356

Query: 130 MSATALLQKAALMGSTRSSTNNNSPLIDAGAFGVM-NSSSLSSSSSSNAV-SLNSLNKSR 189
           MSATALLQKAALMGSTRSS NNNSPL  +GAFGVM +SSSLSSSSSSNAV SLNS NKSR
Sbjct: 357 MSATALLQKAALMGSTRSSNNNNSPLFGSGAFGVMSSSSSLSSSSSSNAVSSLNSFNKSR 416

Query: 190 SMPMADSVQMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFL 249
           S+ MADSVQM+G+NSDLSSN LSQLL+P  NGNN+M+S+ QTRDFLGVGG GEAPRPPFL
Sbjct: 417 SLTMADSVQMIGSNSDLSSNCLSQLLIP-PNGNNAMRSSGQTRDFLGVGG-GEAPRPPFL 476

Query: 250 PPELAKFTAINSTMGLSQFAANH 256
           PPELAKFT INSTMGLSQFAANH
Sbjct: 477 PPELAKFTTINSTMGLSQFAANH 497

[Close]

BLAST of Carg03773-RA vs. ExPASy TrEMBL
Match: A0A1S3B706 (protein indeterminate-domain 9 OS=Cucumis melo OX=3656 GN=LOC103486474 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 7.1e-91
Identity = 213/263 (80.99%), Postives = 226/263 (85.93%), Query Frame = 0


Query: 10  QTLGDVPALSQFT-HSEHFLRDFEDHQHKNRSPFSLWL---------NNNNNISNFYGAS 69
           Q+LGD+  LSQFT HS+HFLRDFEDHQ KNRSP SLWL         NNNNNISNF+GAS
Sbjct: 237 QSLGDISGLSQFTNHSDHFLRDFEDHQQKNRSPLSLWLNQASAENAINNNNNISNFFGAS 296

Query: 70  SSSSNLFGSIAETGLSMLPVFEKEDVEKKGS---LSKAT-SSAAALLSGQSS-SVVSSSP 129
           SSSSNLFGSI E GLSMLPV EKEDVE KGS    SKAT SSAAALLSGQSS SVVSSSP
Sbjct: 297 SSSSNLFGSITENGLSMLPVMEKEDVENKGSNNNFSKATSSSAAALLSGQSSQSVVSSSP 356

Query: 130 MSATALLQKAALMGSTRSSTNNNSPLIDAGAFGVM-NSSSLSSSSSSNAV-SLNSLNKSR 189
           MSATALLQKAALMGSTRSS NNNSPL  +GAFGVM +SSSLSSSSSSNAV SLNS NKSR
Sbjct: 357 MSATALLQKAALMGSTRSSNNNNSPLFGSGAFGVMSSSSSLSSSSSSNAVSSLNSFNKSR 416

Query: 190 SMPMADSVQMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFL 249
           S+ MADSVQM+G+NSDLSSN LSQLL+P  NGNN+M+S+ QTRDFLGVGG GEAPRPPFL
Sbjct: 417 SLTMADSVQMIGSNSDLSSNCLSQLLIP-PNGNNAMRSSGQTRDFLGVGG-GEAPRPPFL 476

Query: 250 PPELAKFTAINSTMGLSQFAANH 256
           PPELAKFT INSTMGLSQFAANH
Sbjct: 477 PPELAKFTTINSTMGLSQFAANH 497

[Close]

BLAST of Carg03773-RA vs. ExPASy TrEMBL
Match: A0A0A0LDZ1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G738980 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.7e-89
Identity = 209/263 (79.47%), Postives = 225/263 (85.55%), Query Frame = 0


Query: 10  QTLGDVPALSQFT-HSEHFLRDFEDHQHKNRSPFSLWL---------NNNNNISNFYGAS 69
           Q+LGD+  LSQFT HS+HFLRDFEDHQ KNRSP SLWL         N+NN+ISNF+GAS
Sbjct: 239 QSLGDISGLSQFTNHSDHFLRDFEDHQQKNRSPLSLWLNQASAENAINSNNSISNFFGAS 298

Query: 70  SSSSNLFGSIAETGLSMLPVFEKEDVEKKGS---LSKAT-SSAAALLSGQSS-SVVSSSP 129
           SSSSNLFGSI E GLSMLPV EKEDVE KGS    SKAT SSAAALLSGQSS SVVSSSP
Sbjct: 299 SSSSNLFGSITENGLSMLPVMEKEDVENKGSNNNFSKATSSSAAALLSGQSSQSVVSSSP 358

Query: 130 MSATALLQKAALMGSTRSSTNNNSPLIDAGAFGVM-NSSSLSSSSSSNAV-SLNSLNKSR 189
           MSATALLQKAALMGSTRS  NNN+PL  +GAFGVM +SSSLSSSSSSNAV SLNSLNKSR
Sbjct: 359 MSATALLQKAALMGSTRSGNNNNTPLFGSGAFGVMSSSSSLSSSSSSNAVSSLNSLNKSR 418

Query: 190 SMPMADSVQMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFL 249
           S+ M DSVQM+G+NSDLSSN LSQLL+P  NGNN+M+S+ QTRDFLGVGG GEAPRPPFL
Sbjct: 419 SLTMVDSVQMIGSNSDLSSNCLSQLLIP-PNGNNAMRSSGQTRDFLGVGG-GEAPRPPFL 478

Query: 250 PPELAKFTAINSTMGLSQFAANH 256
           PPELAKFT INSTMGLSQFAANH
Sbjct: 479 PPELAKFTTINSTMGLSQFAANH 499

The following BLAST results are available for this feature:

BLAST of Carg03773-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017355.1	3.4e-127	100.00	hypothetical protein SDJN02_19220, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580599.1	1.0e-123	97.25	Zinc finger protein BALDIBIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934107.1	5.6e-122	96.08	protein indeterminate-domain 9-like [Cucurbita moschata] >XP_022934108.1 protein...	[more]
XP_023526465.1	7.3e-122	96.08	protein indeterminate-domain 9-like [Cucurbita pepo subsp. pepo] >XP_023526466.1...	[more]
XP_022984080.1	5.2e-120	95.29	protein indeterminate-domain 9-like [Cucurbita maxima] >XP_022984081.1 protein i...	[more]

BLAST of Carg03773-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg03773-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1R6	2.7e-122	96.08	protein indeterminate-domain 9-like OS=Cucurbita moschata OX=3662 GN=LOC11144138...	[more]
A0A6J1J479	2.5e-120	95.29	protein indeterminate-domain 9-like OS=Cucurbita maxima OX=3661 GN=LOC111482501 ...	[more]
A0A5D3DNM0	7.1e-91	80.99	Protein indeterminate-domain 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B706	7.1e-91	80.99	protein indeterminate-domain 9 OS=Cucumis melo OX=3656 GN=LOC103486474 PE=4 SV=1	[more]
A0A0A0LDZ1	6.7e-89	79.47	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G738980 P...	[more]

BLAST of Carg03773-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10593:SF189	ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1	coord: 32..247
None	No IPR available	PANTHER	PTHR10593	SERINE/THREONINE-PROTEIN KINASE RIO	coord: 32..247

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03773	Carg03773	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03773-RA:1	Carg03773-RA:1	exon
Carg03773-RA:2	Carg03773-RA:2	exon
Carg03773-RA:3	Carg03773-RA:3	exon
Carg03773-RA:4	Carg03773-RA:4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03773-RA:cds	Carg03773-RA:cds	CDS
Carg03773-RA:cds	Carg03773-RA:cds_2	CDS
Carg03773-RA:cds	Carg03773-RA:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03773-RA:three_prime_utr	Carg03773-RA:three_prime_utr	three_prime_UTR
Carg03773-RA:three_prime_utr	Carg03773-RA:three_prime_utr_2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03773-RA	Carg03773-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046872	metal ion binding