Carg03641-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg03641-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Thioredoxin-dependent peroxiredoxin
Location	Carg_Chr14: 1513297 .. 1514276 (+)
Sequence length	775
RNA-Seq Expression	Carg03641-RA
Synteny	Carg03641-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCTAATCTTCCTCGGAATCACAGCGGTAAAACTTGTGTCTGTTCTTAAATCAATGAAAGTCGCAGAAGGGCGCACTTTCGAATCTGAGCCACAAGTTGCAGAACAAACCGAACCCTCATCCTCAGAATCACGATGCGGCTACAGTTGCAATTTCTCCGCCACAACATCGCCTTATCACCGTCGCCATCGTCAGTACCCGCCACCTTCTTCACTTCAACTCCTCCAATTTCGTACAGTTGGCAATTGAGAGTCAGGACACCGAAGCTGACGCTGCCGCCGCTCGAATCGCGGAGACCGAAACTCGTAGTTTCGGCAACGGCAGTTCCAGATAATCGGCCTCTGGATCTGACGGAGGATAACGTGAGACAGGCACTGGGTGACGCTCGTGCGGAGCTCGCACAGATCTTCGACGCCTCCGTCGGCATTACAGGTTAGCGAGTTTCTGCCACACTACAAGTTTTCGATATTGAAGTTCCTATAAATTGAGAGAAGAAAGTGACTCAGGAGTGGTGGAATTGGCGGAATTAGATGGACCATTTGTGAAGATTAGTCTTAAAGGTCGATTTTGGCATAAACGTTCCACAGTTGTAGCTCGGGTGGGCAATTATTTGAAGCAGAGAATCCCTGTAAGTCTCTCTTTCTCTGTCTCTACATTTTTGACTGATTAAAATTTAGTGTCTTGTTTAGGTTTGGATTGATTGATTTTGGGTAAACAGTTTTGTATATGAATAGTTAGTTAGGAGTGGTGTTGATGCAGGAGATTTTGGAGGTTGAAATAGAAGATGAGAGTCAATTGGATGATAGTCCTGCAAGCTTTTAATCACCCAGAAACTGAGTAGCTACCATATTGGTATGAACCATGAACCCACCCAACATACAAATTTTATTGTTGTTCATAGCTTATTGGTGTTTATGCTTGTTTTATGGGGAAACCATATGACTTAACACAACTTGATATTTGTTTTGATTGCTTAAA

mRNA sequence

TTTCTCTAATCTTCCTCGGAATCACAGCGGTAAAACTTGTGTCTGTTCTTAAATCAATGAAAGTCGCAGAAGGGCGCACTTTCGAATCTGAGCCACAAGTTGCAGAACAAACCGAACCCTCATCCTCAGAATCACGATGCGGCTACAGTTGCAATTTCTCCGCCACAACATCGCCTTATCACCGTCGCCATCGTCAGTACCCGCCACCTTCTTCACTTCAACTCCTCCAATTTCGTACAGTTGGCAATTGAGAGTCAGGACACCGAAGCTGACGCTGCCGCCGCTCGAATCGCGGAGACCGAAACTCGTAGTTTCGGCAACGGCAGTTCCAGATAATCGGCCTCTGGATCTGACGGAGGATAACGTGAGACAGGCACTGGGTGACGCTCGTGCGGAGCTCGCACAGATCTTCGACGCCTCCGTCGGCATTACAGGAGTGGTGGAATTGGCGGAATTAGATGGACCATTTGTGAAGATTAGTCTTAAAGGTCGATTTTGGCATAAACGTTCCACAGTTGTAGCTCGGGTGGGCAATTATTTGAAGCAGAGAATCCCTGAGATTTTGGAGGTTGAAATAGAAGATGAGAGTCAATTGGATGATAGTCCTGCAAGCTTTTAATCACCCAGAAACTGAGTAGCTACCATATTGGTATGAACCATGAACCCACCCAACATACAAATTTTATTGTTGTTCATAGCTTATTGGTGTTTATGCTTGTTTTATGGGGAAACCATATGACTTAACACAACTTGATATTTGTTTTGATTGCTTAAA

Coding sequence (CDS)

ATGCGGCTACAGTTGCAATTTCTCCGCCACAACATCGCCTTATCACCGTCGCCATCGTCAGTACCCGCCACCTTCTTCACTTCAACTCCTCCAATTTCGTACAGTTGGCAATTGAGAGTCAGGACACCGAAGCTGACGCTGCCGCCGCTCGAATCGCGGAGACCGAAACTCGTAGTTTCGGCAACGGCAGTTCCAGATAATCGGCCTCTGGATCTGACGGAGGATAACGTGAGACAGGCACTGGGTGACGCTCGTGCGGAGCTCGCACAGATCTTCGACGCCTCCGTCGGCATTACAGGAGTGGTGGAATTGGCGGAATTAGATGGACCATTTGTGAAGATTAGTCTTAAAGGTCGATTTTGGCATAAACGTTCCACAGTTGTAGCTCGGGTGGGCAATTATTTGAAGCAGAGAATCCCTGAGATTTTGGAGGTTGAAATAGAAGATGAGAGTCAATTGGATGATAGTCCTGCAAGCTTTTAA

Protein sequence

MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVSATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRFWHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF

Homology

[Close]

BLAST of Carg03641-RA vs. NCBI nr
Match: KAG6580734.1 (hypothetical protein SDJN03_20736, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017487.1 hypothetical protein SDJN02_19352 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.0 bits (798), Expect = 3.0e-81
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60
           MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60

Query: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120
           ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF
Sbjct: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120

Query: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF
Sbjct: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 160

[Close]

BLAST of Carg03641-RA vs. NCBI nr
Match: XP_022934752.1 (uncharacterized protein LOC111441837 [Cucurbita moschata])

HSP 1 Score: 307.8 bits (787), Expect = 5.6e-80
Identity = 158/160 (98.75%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60
           MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60

Query: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120
           ATA PDNRPLDLTEDNVRQAL DARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF
Sbjct: 61  ATAAPDNRPLDLTEDNVRQALDDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120

Query: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF
Sbjct: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 160

[Close]

BLAST of Carg03641-RA vs. NCBI nr
Match: XP_022983136.1 (uncharacterized protein LOC111481776 [Cucurbita maxima])

HSP 1 Score: 304.3 bits (778), Expect = 6.2e-79
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60
           MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSW+LRVRTP LTL PLESRRPKLVVS
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWRLRVRTPTLTLLPLESRRPKLVVS 60

Query: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120
           ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF
Sbjct: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120

Query: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF
Sbjct: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 160

[Close]

BLAST of Carg03641-RA vs. NCBI nr
Match: XP_023529130.1 (uncharacterized protein LOC111791863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.7 bits (753), Expect = 4.9e-76
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 4   QLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKL--TLPPLESRRPKLVVSA 63
           QLQFLRHNIALSPSPSS PATFFTSTPPISYSW+LR RTP L  TLPPLESRRPKLVVSA
Sbjct: 4   QLQFLRHNIALSPSPSSAPATFFTSTPPISYSWRLRFRTPTLTQTLPPLESRRPKLVVSA 63

Query: 64  TAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRFW 123
           TAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRFW
Sbjct: 64  TAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRFW 123

Query: 124 HKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           HKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF
Sbjct: 124 HKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 162

[Close]

BLAST of Carg03641-RA vs. NCBI nr
Match: XP_038903952.1 (uncharacterized protein LOC120090394 isoform X2 [Benincasa hispida])

HSP 1 Score: 234.6 bits (597), Expect = 6.1e-58
Identity = 128/166 (77.11%), Postives = 136/166 (81.93%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPIS------YSWQLRVRTPKLTLPPLESRR 60
           MRLQ  FLRHNI  SPSPS + ATFFTS P IS       S + R R    T  P++S+R
Sbjct: 1   MRLQAPFLRHNIVSSPSPSPIAATFFTSAPSISTFRPPHSSLRFRFR----TRTPVDSQR 60

Query: 61  PKLVVSATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKI 120
            +L VSATAVPD RPLDLTE+NVRQALG+ R ELAQIFD SVGITGVVELAELDGPFVKI
Sbjct: 61  RRLTVSATAVPDQRPLDLTEENVRQALGEVRVELAQIFDGSVGITGVVELAELDGPFVKI 120

Query: 121 SLKGRFWHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           SLKGRFWHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF
Sbjct: 121 SLKGRFWHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 162

[Close]

BLAST of Carg03641-RA vs. ExPASy TrEMBL
Match: A0A6J1F3P2 (uncharacterized protein LOC111441837 OS=Cucurbita moschata OX=3662 GN=LOC111441837 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.7e-80
Identity = 158/160 (98.75%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60
           MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60

Query: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120
           ATA PDNRPLDLTEDNVRQAL DARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF
Sbjct: 61  ATAAPDNRPLDLTEDNVRQALDDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120

Query: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF
Sbjct: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 160

[Close]

BLAST of Carg03641-RA vs. ExPASy TrEMBL
Match: A0A6J1J196 (uncharacterized protein LOC111481776 OS=Cucurbita maxima OX=3661 GN=LOC111481776 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.0e-79
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVS 60
           MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSW+LRVRTP LTL PLESRRPKLVVS
Sbjct: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWRLRVRTPTLTLLPLESRRPKLVVS 60

Query: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120
           ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF
Sbjct: 61  ATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRF 120

Query: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF
Sbjct: 121 WHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 160

[Close]

BLAST of Carg03641-RA vs. ExPASy TrEMBL
Match: A0A0A0LGR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778420 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53
Identity = 123/168 (73.21%), Postives = 130/168 (77.38%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPI--------SYSWQLRVRTPKLTLPPLES 60
           MRLQ  FLR NI  +PS   + ATF+T+ PPI        S S QLR+RTP         
Sbjct: 3   MRLQAPFLRPNIVSTPSLPLIAATFYTAPPPISKFRMPETSSSLQLRMRTP--------- 62

Query: 61  RRPKLVVSATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFV 120
            R K  VSAT VPD RPLDLTE+NVRQALG+AR ELAQIFD SVGITGVVELAELDGPFV
Sbjct: 63  -RRKFNVSATLVPDQRPLDLTEENVRQALGEARVELAQIFDDSVGITGVVELAELDGPFV 122

Query: 121 KISLKGRFWHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           KISLKGRFWHKRSTVVARVGNYLK RIPEILEVEIEDESQLDDSPASF
Sbjct: 123 KISLKGRFWHKRSTVVARVGNYLKNRIPEILEVEIEDESQLDDSPASF 160

[Close]

BLAST of Carg03641-RA vs. ExPASy TrEMBL
Match: A0A1S3B7J1 (uncharacterized protein LOC103486663 OS=Cucumis melo OX=3656 GN=LOC103486663 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53
Identity = 122/161 (75.78%), Postives = 129/161 (80.12%), Query Frame = 0


Query: 1   MRLQLQFLRHNIALSPSPSSVPATFFTSTPPISYSWQLR-VRTPKLTLPPLESRRPKLVV 60
           MRLQ  FLRHNI   PS S   ATFFT+ PPIS   + R   TP      + + R KL V
Sbjct: 1   MRLQAPFLRHNIVSPPSLSLTAATFFTAPPPIS---KFRPPETPSSLRLIMRTPRRKLNV 60

Query: 61  SATAVPDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGR 120
           SAT VPD RPLDLTE+NV+QALG+AR ELAQIFD SVGITGVVELAELDGPFVKISLKGR
Sbjct: 61  SATLVPDQRPLDLTEENVKQALGEARVELAQIFDDSVGITGVVELAELDGPFVKISLKGR 120

Query: 121 FWHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           FWHKRSTVVARVGNYLK RIPEILEVEIEDESQLDDSPASF
Sbjct: 121 FWHKRSTVVARVGNYLKNRIPEILEVEIEDESQLDDSPASF 158

[Close]

BLAST of Carg03641-RA vs. ExPASy TrEMBL
Match: A0A6J1CS17 (uncharacterized protein LOC111014231 OS=Momordica charantia OX=3673 GN=LOC111014231 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.3e-45
Identity = 110/156 (70.51%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 10  HNIALSPSPSSVP-----ATFFTSTPPISYSWQLRVRTPKLTLPPLESRRPKLVVSATAV 69
           HNIA SP P   P     A     TPP     +  +R        LESRR KL V A AV
Sbjct: 11  HNIASSPPPPPTPTPTPVAVAAFLTPPS----RSNLRPLPAAHSRLESRRSKLSVWAAAV 70

Query: 70  PDNRPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAELDGPFVKISLKGRFWHKR 129
           P+ RPLDLTE+NV +AL DAR ELAQIFDASVGITGVVELAELDGPFVKISL+GRFWHKR
Sbjct: 71  PNQRPLDLTEENVIEALVDARLELAQIFDASVGITGVVELAELDGPFVKISLRGRFWHKR 130

Query: 130 STVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           STVVARVGNYLK RIPEILEVEIE+ESQLDDSPASF
Sbjct: 131 STVVARVGNYLKNRIPEILEVEIEEESQLDDSPASF 162

[Close]

BLAST of Carg03641-RA vs. TAIR 10
Match: AT2G33180.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-36
Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 51  ESRRPKLVVSATAVPDN----RPLDLTEDNVRQALGDARAELAQIFDASVGITGVVELAE 110
           E  R + + +A AV  +     PLDLTEDN+   L +AR ELAQ+FD+SVGITG VEL E
Sbjct: 53  EKSRARTLTTAEAVSGSGVSLPPLDLTEDNIHLVLSEARIELAQLFDSSVGITGQVELVE 112

Query: 111 LDGPFVKISLKGRFWHKRSTVVARVGNYLKQRIPEILEVEIEDESQLDDSPASF 161
           LDGPFV ISL+G+FWH R+ V+AR+GNYLKQRIPEILEV IEDE QLDDSPA+F
Sbjct: 113 LDGPFVTISLRGKFWHTRAMVLARLGNYLKQRIPEILEVNIEDEKQLDDSPANF 166

The following BLAST results are available for this feature:

BLAST of Carg03641-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580734.1	3.0e-81	100.00	hypothetical protein SDJN03_20736, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934752.1	5.6e-80	98.75	uncharacterized protein LOC111441837 [Cucurbita moschata]	[more]
XP_022983136.1	6.2e-79	98.13	uncharacterized protein LOC111481776 [Cucurbita maxima]	[more]
XP_023529130.1	4.9e-76	96.23	uncharacterized protein LOC111791863 [Cucurbita pepo subsp. pepo]	[more]
XP_038903952.1	6.1e-58	77.11	uncharacterized protein LOC120090394 isoform X2 [Benincasa hispida]	[more]

BLAST of Carg03641-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg03641-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3P2	2.7e-80	98.75	uncharacterized protein LOC111441837 OS=Cucurbita moschata OX=3662 GN=LOC1114418...	[more]
A0A6J1J196	3.0e-79	98.13	uncharacterized protein LOC111481776 OS=Cucurbita maxima OX=3661 GN=LOC111481776...	[more]
A0A0A0LGR7	2.2e-53	73.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778420 PE=4 SV=1	[more]
A0A1S3B7J1	2.2e-53	75.78	uncharacterized protein LOC103486663 OS=Cucumis melo OX=3656 GN=LOC103486663 PE=...	[more]
A0A6J1CS17	6.3e-45	70.51	uncharacterized protein LOC111014231 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Carg03641-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33180.1	9.1e-36	65.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	3.30.300.130		coord: 69..148 e-value: 6.4E-16 score: 60.3
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	117916	Fe-S cluster assembly (FSCA) domain-like	coord: 100..147
None	No IPR available	PANTHER	PTHR36018	OS09G0481800 PROTEIN	coord: 40..160

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03641	Carg03641	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03641-RA:1	Carg03641-RA:1	exon
Carg03641-RA:2	Carg03641-RA:2	exon
Carg03641-RA:3	Carg03641-RA:3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03641-RA:five_prime_utr	Carg03641-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03641-RA:cds	Carg03641-RA:cds	CDS
Carg03641-RA:cds	Carg03641-RA:cds_2	CDS
Carg03641-RA:cds	Carg03641-RA:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03641-RA:three_prime_utr	Carg03641-RA:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03641-RA	Carg03641-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
molecular_function	GO:0051920	peroxiredoxin activity