Carg02776-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02776-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 1672034 .. 1674575 (+)
Sequence length414
RNA-Seq ExpressionCarg02776-RA
SyntenyCarg02776-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTCTTCCCCGCGGGAATATTTCGACTGAGCGGTAGGTATCGCTCGTAGTGGCGAATGGATTCTCTGATAATTGAGTGATAATGTCGGCAGTTAACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACGTTGGATCGCTCGATATCGAGCGCTGGCCTAACGAGGCTCCAAAAGCCGCCAGAAATTTCGTTCGGCTTTGTCTTGATGACTACTACGATAACACCACCATTCACCGGATTGTACCGGATTTCATTGTTTAGAGCTGTGATCCTACCGGTAGTGGCACAGGTCCGTCCATTTCTGTCTTGCTTCTATTCTGGTTGCATTTATTGGTTAGTGTTTTTGTAAAGCTCTGTATTCTACTGGTAGTGGATATTTGTTAGAGAAGCTGATCGTTGAGTTCTTGCATGGAGAAATTAAAGAGAGTTCAAGTGAATTGGTAGTTAATGAAGTTCACTCGATCATTCTCTGCCTAATGACGTTTCGAGAATGTATTATTATTCTCTGCCTAATGATATTTGGATAGCGTTCTTAAGTTATCGAGAATGTTATGTTACTTTGTGGTATGTAGTCACTGGCTATGCTGTCCTAAGACAATGTGGGATAGTGTCTTCATAGTGTTTATGAACACCATGATAGAACAATAGAAGGAGAAGTGGAGAAGCTAATCAAGCAGAGCAGACTACCTTGCTACCATGTAGGTGGGAAGGTATTAGGCACGGAATTAGTCCGTTTTCTGAAGGAGGGGGCTAGGAAAATAGATAACAACAGGGAAGAGGGAACGCGAGCCAAAATGTTGGGCATCAATGTCCGAAGTTCCAAAATCGTGCGTATGCATCATTATTTTTCTTATTTTTTGGCAATCTGCATTTTTACGCAGGTGATGCAAGTATATATGGGGTATTTCCCTCGATGAGTTTTACTCATGGCTTAGATTCAAGCACGGGGCTCGGTAGCATGAGTTTTACTCATTCTAATGGAAGTAAATTTTTTATAACCTTGAGTCGATGTGATGAACTTGACAAGAAGCATACAATTTAAAGAAAGGTAACAATGATTCTTATTGTGCAACCATTTTGATCTTGCTTGCTAATGTAATGCTAGAGTTCATAGATTGTTTTAGGTCAATGGGGATCCTGTGGATCCACCCAAGATAAAATCAGTTGAGGTAGGATTTAATGATAGAAGTTTTGAACTAGGTTGCAGTTTCATAATAGCTTTTCCTTTTGATGGTCCTTTCATGTTTCCTTAATGTTATAAGCTTCTATTATGTAAAAAGAATCTTTAAGGTACTTTGGAATCCATTTGAGACGATGTTGATTCTGAAAACATGGACACTAAGAAGAAAGCTGTGAAGTTAGAGTTCATACATTTCAGAACTCTCTTCGGAGATACATACCTTGGTTATCCCTGATTTCTCTGTTGCTTGGTATGTTTGCATACTGTAGAAAACTAAATTTACTATCATTTGGAGAAGAAGCTGAAGATGATGAGAAAGAACTGGCAGCTTTGAAGAGAAAAAAAAAAAAATAGGAGCAGTCATTTTGTATTGGATGATCCACGTCTGTTATTGGAAGAGATTCCAAGCAGTGTTTCGGTAAATAAACAAACAAAATAAAATAAGAAATTTCAATTACATTGCTTATCAATGTTCCAAAACTTTTCAGGGGGAATAATGAATTAGTATAAGCTTGCTGCTCTCTTGATCTGAACAACTTTCAAGTAATCATCTTCTGAATGCCTCATTTCAATTTTCCCCTTGCAAGCTCAATTCTTACCCAAAAAAACCCCCTTGATTTTCATACGAGGTCTGTTCATCTGAGATAAGTGTCAATAATATCTTCTTCTAACATTCACTTTCGAAGCTGCGGTAGTTGCAAAACTTAGTTGAGATCGTTTATGGCACATACATAATATTTGTTGGTTTCTAACTGACCATGATGAACCTTTTGAGTGCAGAACTCGCCTGACAGTAAGAACAAGGGAGATGCAGCTATCTGTTTGAGAAACTTTAGCATCAAATAAACAAGACACTCGTAGAGATTCAGATTCTGAAAATTCTGATCTCCCTCAATATTGCAATAGTAATGACAGTGGAGCTAACTTTGATGCTCGAATGCGTCAACAGATATTGAGAAAAATAACAGAGTTGGGAGATGAGCCATCTCACCCCACAAGTCTAAAAAATCTTATTTCATTGTTTAGCTTGGCTTTGGTACAAAGACACCAGGAAAATGAAAGGACATTTAAAATTTCAAATTATGAATCTCAACTTTATTACGCTCTTAAGCTTAGATCTCAAAGCTTTCCCTTTCTCCTTTCTCATTGTTGGTTTGTGACTTTAATATCTTCTGTATAATGAGGAACTTCTGTTTGCATCTTTTCATGCATGGATATTCGCATTTCTTACTTCTCCAATCTTTATAGCAAGTAAAGTAATTACTTTTTCTTTTTGTTACAGGTTTTGGAAAAACTTGCGAATTTTGAGAAAGTCATTTCTGGAAAACCCAGTAACTTCAAGCGCTGA

mRNA sequence

TTCCTTCTTCCCCGCGGGAATATTTCGACTGAGCGGTAGGTATCGCTCGTAGTGGCGAATGGATTCTCTGATAATTGAGTGATAATGTCGGCAGTTAACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACGTTGGATCGCTCGATATCGAGCGCTGGCCTAACGAGGCTCCAAAAGCCGCCAGAAATTTCGTTCGGCTTTGTCTTGATGACTACTACGATAACACCACCATTCACCGGATTGTACCGGATTTCATTGTTTAGAGCTGTGATCCTACCGGTAGTGGCACAGGTCAATGGGGATCCTGTGGATCCACCCAAGATAAAATCAGTTGAGGTTTTGGAAAAACTTGCGAATTTTGAGAAAGTCATTTCTGGAAAACCCAGTAACTTCAAGCGCTGA

Coding sequence (CDS)

ATGTCGGCAGTTAACGTATTAGAGCCGCCGACGAGGGGGAAGGTCGTGTTGAATACCACGTTGGATCGCTCGATATCGAGCGCTGGCCTAACGAGGCTCCAAAAGCCGCCAGAAATTTCGTTCGGCTTTGTCTTGATGACTACTACGATAACACCACCATTCACCGGATTGTACCGGATTTCATTGTTTAGAGCTGTGATCCTACCGGTAGTGGCACAGGTCAATGGGGATCCTGTGGATCCACCCAAGATAAAATCAGTTGAGGTTTTGGAAAAACTTGCGAATTTTGAGAAAGTCATTTCTGGAAAACCCAGTAACTTCAAGCGCTGA

Protein sequence

MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRISLFRAVILPVVAQVNGDPVDPPKIKSVEVLEKLANFEKVISGKPSNFKR
Homology
[Close]
BLAST of Carg02776-RA vs. NCBI nr
Match: KAG7024356.1 (hypothetical protein SDJN02_13170 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI 60
           MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI
Sbjct: 1   MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI 60

Query: 61  SLFRAVILPVVAQVNGDPVDPPKIKSVEVLEKLANFEKVISGKPSNFKR 110
           SLFRAVILPVVAQVNGDPVDPPKIKSVEVLEKLANFEKVISGKPSNFKR
Sbjct: 61  SLFRAVILPVVAQVNGDPVDPPKIKSVEVLEKLANFEKVISGKPSNFKR 109

[Close]
BLAST of Carg02776-RA vs. NCBI nr
Match: KAG6591475.1 (hypothetical protein SDJN03_13821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 89/104 (85.58%), Postives = 89/104 (85.58%), Query Frame = 0 

Query: 1   MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI 60
           MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI
Sbjct: 1   MSAVNVLEPPTRGKVVLNTTLDRSISSAGLTRLQKPPEISFGFVLMTTTITPPFTGLYRI 60

Query: 61  SLFRAVILPVVAQVNGDPVDPPKIKSVEVLEKLANFEKVISGKP 105
           SLFRAVILPVVAQ               VLEKLANFEKVISGKP
Sbjct: 61  SLFRAVILPVVAQ---------------VLEKLANFEKVISGKP 89

The following BLAST results are available for this feature:
BLAST of Carg02776-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024356.11.7e-51100.00hypothetical protein SDJN02_13170 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6591475.12.6e-3685.58hypothetical protein SDJN03_13821, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg02776-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02776-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg02776-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg02776Carg02776gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02776-RA:1Carg02776-RA:1exon
Carg02776-RA:2Carg02776-RA:2exon
Carg02776-RA:3Carg02776-RA:3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02776-RA:five_prime_utrCarg02776-RA:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02776-RA:cdsCarg02776-RA:cdsCDS
Carg02776-RA:cdsCarg02776-RA:cds_2CDS
Carg02776-RA:cdsCarg02776-RA:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg02776-RACarg02776-RA-proteinpolypeptide