Carg02638-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02638-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	WHy domain-containing protein
Location	Carg_Chr02: 7666981 .. 7667538 (-)
Sequence length	558
RNA-Seq Expression	Carg02638-RA
Synteny	Carg02638-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAAGCGTAGCTGGAGCTGGAGCTGGGGGTCCGCCCTAGTCGGAGCAGCGTCGGCGATTGCAGCGACAGCGATCGTTTCCGCCAAGCCCAAGGACCCAACCTTCCACCTTATCTCAATTAAGTTCACTTCCTTCAAGCTGAAGCCGCCGGTAGTTGACGCCGAGCTCATCCTGACCGTCCACGTCACCAACCCCAACGTGGCCCCCATCCACTACTCCTCTACCTCCATGTCCATTTTCTACGACGGCTCCCTCCTCGGCTCGGCCCACGTCGACGCCGGTTCGCAGCAGGCCCGGTCCTGTCAGGTCCTCCGCCTTCCAGCCCGACTCGACGGCCTGAAGCTGGCCCACAACGGCAGCCGGTTCATCTCCGACGTCATGAAACGAGAAATGGTTCTGGATGCGAGTGTGGATATTGGGGGAATTGCAAGAGTGCTTTGGTGGAGTCACAAGTTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTCGATGTGCTTGATCAGGAAAACACTTCCCAACTTGAGCTGTTTCTTTCTTGA

mRNA sequence

ATGGAGAAAAAGCGTAGCTGGAGCTGGAGCTGGGGGTCCGCCCTAGTCGGAGCAGCGTCGGCGATTGCAGCGACAGCGATCGTTTCCGCCAAGCCCAAGGACCCAACCTTCCACCTTATCTCAATTAAGTTCACTTCCTTCAAGCTGAAGCCGCCGGTAGTTGACGCCGAGCTCATCCTGACCGTCCACGTCACCAACCCCAACGTGGCCCCCATCCACTACTCCTCTACCTCCATGTCCATTTTCTACGACGGCTCCCTCCTCGGCTCGGCCCACGTCGACGCCGGTTCGCAGCAGGCCCGGTCCTGTCAGGTCCTCCGCCTTCCAGCCCGACTCGACGGCCTGAAGCTGGCCCACAACGGCAGCCGGTTCATCTCCGACGTCATGAAACGAGAAATGGTTCTGGATGCGAGTGTGGATATTGGGGGAATTGCAAGAGTGCTTTGGTGGAGTCACAAGTTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTCGATGTGCTTGATCAGGAAAACACTTCCCAACTTGAGCTGTTTCTTTCTTGA

Coding sequence (CDS)

ATGGAGAAAAAGCGTAGCTGGAGCTGGAGCTGGGGGTCCGCCCTAGTCGGAGCAGCGTCGGCGATTGCAGCGACAGCGATCGTTTCCGCCAAGCCCAAGGACCCAACCTTCCACCTTATCTCAATTAAGTTCACTTCCTTCAAGCTGAAGCCGCCGGTAGTTGACGCCGAGCTCATCCTGACCGTCCACGTCACCAACCCCAACGTGGCCCCCATCCACTACTCCTCTACCTCCATGTCCATTTTCTACGACGGCTCCCTCCTCGGCTCGGCCCACGTCGACGCCGGTTCGCAGCAGGCCCGGTCCTGTCAGGTCCTCCGCCTTCCAGCCCGACTCGACGGCCTGAAGCTGGCCCACAACGGCAGCCGGTTCATCTCCGACGTCATGAAACGAGAAATGGTTCTGGATGCGAGTGTGGATATTGGGGGAATTGCAAGAGTGCTTTGGTGGAGTCACAAGTTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTCGATGTGCTTGATCAGGAAAACACTTCCCAACTTGAGCTGTTTCTTTCTTGA

Protein sequence

MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELILTVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLS

Homology

[Close]

BLAST of Carg02638-RA vs. NCBI nr
Match: XP_022958123.1 (uncharacterized protein LOC111459445 [Cucurbita moschata] >KAG6605982.1 hypothetical protein SDJN03_03299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035933.1 hypothetical protein SDJN02_02733, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL
Sbjct: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN
Sbjct: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFLS
Sbjct: 181 ELFLS 185

[Close]

BLAST of Carg02638-RA vs. NCBI nr
Match: XP_022995154.1 (uncharacterized protein LOC111490777 [Cucurbita maxima])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPV+DAELIL
Sbjct: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVIDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSA VDAGSQQARSCQVLRLPARLDGLKLAHN
Sbjct: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAQVDAGSQQARSCQVLRLPARLDGLKLAHN 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFLS
Sbjct: 181 ELFLS 185

[Close]

BLAST of Carg02638-RA vs. NCBI nr
Match: XP_023532793.1 (uncharacterized protein LOC111794859 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.9 bits (925), Expect = 6.5e-96
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL
Sbjct: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSA VDAGSQQARSCQVLRLPARLDGLKLAHN
Sbjct: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAQVDAGSQQARSCQVLRLPARLDGLKLAHN 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHL VDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLIVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFLS
Sbjct: 181 ELFLS 185

[Close]

BLAST of Carg02638-RA vs. NCBI nr
Match: XP_038900652.1 (uncharacterized protein LOC120087813 [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 172/185 (92.97%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           M KKR+WSWS  SALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL
Sbjct: 1   MGKKRNWSWS--SALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSST+MSIFYDGSLLGSA VDAGSQQ RSCQVLRLPARLDGLKLAH+
Sbjct: 61  TVHVTNPNVAPIHYSSTAMSIFYDGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHH 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDV KREM+LDASVDIGG A+VLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVAKREMILDASVDIGGFAKVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFL+
Sbjct: 181 ELFLT 183

[Close]

BLAST of Carg02638-RA vs. NCBI nr
Match: KAA0061714.1 (late embryogenesis abundant hydroxyproline-rich glycoprotein [Cucumis melo var. makuwa] >TYJ96050.1 late embryogenesis abundant hydroxyproline-rich glycoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 334.7 bits (857), Expect = 5.0e-88
Identity = 170/185 (91.89%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           M KKR+WSWS  SALVGAASA+AATAI+SAKPKDPTFHLISIKFTSFKLKPPVVDAELIL
Sbjct: 1   MGKKRNWSWS--SALVGAASAVAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSST+MSIFY+GSLLGSA VDAGSQQ RSCQVLRLPARLDGLKLAH+
Sbjct: 61  TVHVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHH 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDV KREMVLDASVDIGG A+VLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVAKREMVLDASVDIGGFAKVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFL+
Sbjct: 181 ELFLN 183

[Close]

BLAST of Carg02638-RA vs. ExPASy TrEMBL
Match: A0A6J1H295 (uncharacterized protein LOC111459445 OS=Cucurbita moschata OX=3662 GN=LOC111459445 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.5e-98
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL
Sbjct: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN
Sbjct: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFLS
Sbjct: 181 ELFLS 185

[Close]

BLAST of Carg02638-RA vs. ExPASy TrEMBL
Match: A0A6J1K4X2 (uncharacterized protein LOC111490777 OS=Cucurbita maxima OX=3661 GN=LOC111490777 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.3e-97
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPV+DAELIL
Sbjct: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVIDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSA VDAGSQQARSCQVLRLPARLDGLKLAHN
Sbjct: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAQVDAGSQQARSCQVLRLPARLDGLKLAHN 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFLS
Sbjct: 181 ELFLS 185

[Close]

BLAST of Carg02638-RA vs. ExPASy TrEMBL
Match: A0A5D3B864 (Late embryogenesis abundant hydroxyproline-rich glycoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00090 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88
Identity = 170/185 (91.89%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           M KKR+WSWS  SALVGAASA+AATAI+SAKPKDPTFHLISIKFTSFKLKPPVVDAELIL
Sbjct: 1   MGKKRNWSWS--SALVGAASAVAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSST+MSIFY+GSLLGSA VDAGSQQ RSCQVLRLPARLDGLKLAH+
Sbjct: 61  TVHVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHH 120

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDV KREMVLDASVDIGG A+VLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 121 GSRFISDVAKREMVLDASVDIGGFAKVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180

Query: 181 ELFLS 186
           ELFL+
Sbjct: 181 ELFLN 183

[Close]

BLAST of Carg02638-RA vs. ExPASy TrEMBL
Match: A0A1S3BMZ9 (uncharacterized protein LOC103491417 OS=Cucumis melo OX=3656 GN=LOC103491417 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88
Identity = 170/185 (91.89%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           M KKR+WSWS  SALVGAASA+AATAI+SAKPKDPTFHLISIKFTSFKLKPPVVDAELIL
Sbjct: 48  MGKKRNWSWS--SALVGAASAVAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 107

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSST+MSIFY+GSLLGSA VDAGSQQ RSCQVLRLPARLDGLKLAH+
Sbjct: 108 TVHVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHH 167

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDV KREMVLDASVDIGG A+VLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 168 GSRFISDVAKREMVLDASVDIGGFAKVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 227

Query: 181 ELFLS 186
           ELFL+
Sbjct: 228 ELFLN 230

[Close]

BLAST of Carg02638-RA vs. ExPASy TrEMBL
Match: A0A0A0KGW5 (WHy domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G425170 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.4e-88
Identity = 170/185 (91.89%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELIL 60
           M KKR+WSW+  SALVGAASAIAATAI+SAKPKDPTFHLISIKFTSFKLKPPVVD ELIL
Sbjct: 40  MGKKRNWSWT--SALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELIL 99

Query: 61  TVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHN 120
           TVHVTNPNVAPIHYSST+MSIFY+GSLLGSA VDAGSQQ RSCQVLRLPARLDGLKLAH+
Sbjct: 100 TVHVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHH 159

Query: 121 GSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 180
           GSRFISDV KREMVLDASVDIGG ARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL
Sbjct: 160 GSRFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQL 219

Query: 181 ELFLS 186
           ELFL+
Sbjct: 220 ELFLN 222

[Close]

BLAST of Carg02638-RA vs. TAIR 10
Match: AT3G44380.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-67
Identity = 123/177 (69.49%), Postives = 147/177 (83.05%), Query Frame = 0


Query: 9   WSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVVDAELILTVHVTNPN 68
           WSW SAL+GAASA AA +++SAKPKDPTFHLISI  TS KL  PV+DAEL+LTVHVTNPN
Sbjct: 10  WSWSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHVTNPN 69

Query: 69  VAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDV 128
           +A IHYSST M+I YDG++LGSA V AGSQ ARSCQ+LRLPARLDG++LA +  +F SDV
Sbjct: 70  IAAIHYSSTKMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQFFSDV 129

Query: 129 MKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLS 186
             REM L+A + I G A+VLWW H F+VHVDS +TVDPVFLDV+ QEN SQ++LFL+
Sbjct: 130 ANREMKLEAKLTIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDVIGQENKSQMDLFLT 186

[Close]

BLAST of Carg02638-RA vs. TAIR 10
Match: AT1G52330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-08
Identity = 38/139 (27.34%), Postives = 62/139 (44.60%), Query Frame = 0


Query: 32  PKDPTFHLISIKFTSFKL--KP-PVVDAELILTVHVTNPNVAPIHYSSTSMSIFYDGSLL 91
           P DP   +I +K +   +  +P P +D  L++T+ V+N +V    ++   ++I Y G  L
Sbjct: 64  PSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTL 123

Query: 92  GSAHVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDVMKREMVLDASVDIGGIARVL 151
           G    D G   A     L   A LDG+ +  +    I D+ K  +  D   +  G   VL
Sbjct: 124 GHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVL 183

Query: 152 WWSHKFKVHVDSHLTVDPV 168
           ++    K  V   + VD V
Sbjct: 184 FFRFPLKAKVACGILVDTV 202

[Close]

BLAST of Carg02638-RA vs. TAIR 10
Match: AT1G52330.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 35/128 (27.34%), Postives = 58/128 (45.31%), Query Frame = 0


Query: 32  PKDPTFHLISIKFTSFKL--KP-PVVDAELILTVHVTNPNVAPIHYSSTSMSIFYDGSLL 91
           P DP   +I +K +   +  +P P +D  L++T+ V+N +V    ++   ++I Y G  L
Sbjct: 64  PSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTL 123

Query: 92  GSAHVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDVMKREMVLDASVDIGGIARVL 151
           G    D G   A     L   A LDG+ +  +    I D+ K  +  D   +  G   VL
Sbjct: 124 GHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVL 183

Query: 152 WWSHKFKV 157
           ++    KV
Sbjct: 184 FFRFPLKV 191

[Close]

BLAST of Carg02638-RA vs. TAIR 10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 43.1 bits (100), Expect = 2.8e-04
Identity = 45/170 (26.47%), Postives = 75/170 (44.12%), Query Frame = 0


Query: 22  IAATAIVSAKPKDPTFHLISIKFTSFKLKPPVV------------------------DAE 81
           I  +  V+A     T  ++++ FT F++K P++                        +  
Sbjct: 36  IKCSICVTATSLILTTIVLTLVFTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNIS 95

Query: 82  LILTVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAHVDAGSQQARSCQVLRLPARLDGLKL 141
           +I+ V V NPN A   YS+T+  I+Y G+L+G AH   G  +AR  +  R+   +D +  
Sbjct: 96  MIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPG--KARPHRTSRMNVTVDIML- 155

Query: 142 AHNGSRFISDV-MKREMVLDASVDIGGIARVLWWSHKFKVH--VDSHLTV 165
                R +SD  + RE+     V++    RV     K K+   V  H+TV
Sbjct: 156 ----DRILSDPGLGREISRSGLVNVWSYTRV---GGKVKIMGIVKKHVTV 195

The following BLAST results are available for this feature:

BLAST of Carg02638-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958123.1	1.5e-97	100.00	uncharacterized protein LOC111459445 [Cucurbita moschata] >KAG6605982.1 hypothet...	[more]
XP_022995154.1	1.7e-96	98.92	uncharacterized protein LOC111490777 [Cucurbita maxima]	[more]
XP_023532793.1	6.5e-96	98.92	uncharacterized protein LOC111794859 [Cucurbita pepo subsp. pepo]	[more]
XP_038900652.1	1.3e-88	92.97	uncharacterized protein LOC120087813 [Benincasa hispida]	[more]
KAA0061714.1	5.0e-88	91.89	late embryogenesis abundant hydroxyproline-rich glycoprotein [Cucumis melo var. ...	[more]

BLAST of Carg02638-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02638-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H295	7.5e-98	100.00	uncharacterized protein LOC111459445 OS=Cucurbita moschata OX=3662 GN=LOC1114594...	[more]
A0A6J1K4X2	8.3e-97	98.92	uncharacterized protein LOC111490777 OS=Cucurbita maxima OX=3661 GN=LOC111490777...	[more]
A0A5D3B864	2.4e-88	91.89	Late embryogenesis abundant hydroxyproline-rich glycoprotein OS=Cucumis melo var...	[more]
A0A1S3BMZ9	2.4e-88	91.89	uncharacterized protein LOC103491417 OS=Cucumis melo OX=3656 GN=LOC103491417 PE=...	[more]
A0A0A0KGW5	5.4e-88	91.89	WHy domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G425170 PE=3 SV...	[more]

BLAST of Carg02638-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44380.1	2.3e-67	69.49	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.1	7.1e-08	27.34	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.2	6.0e-07	27.34	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	2.8e-04	26.47	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013990	Water stress and hypersensitive response domain	SMART	SM00769	why	coord: 42..155 e-value: 2.8E-14 score: 63.5
None	No IPR available	GENE3D	2.60.40.1820		coord: 15..166 e-value: 1.0E-9 score: 40.4
None	No IPR available	PANTHER	PTHR31852:SF7	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 3..172
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 3..172
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 24..160
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 61..159 e-value: 5.3E-13 score: 49.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02638	Carg02638	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02638-RA:1	Carg02638-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02638-RA:cds	Carg02638-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02638-RA	Carg02638-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009269	response to desiccation
cellular_component	GO:0016021	integral component of membrane