Carg02494-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg02494-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionagamous-like MADS-box protein AGL19
LocationCarg_Chr02: 8458346 .. 8461146 (+)
Sequence length1244
RNA-Seq ExpressionCarg02494-RA
SyntenyCarg02494-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTCTCTTTCCTTCTAAGCCTTTTTTCTTCTTCTTCTTCTTCTTCATCTTCTCTTACATTTCTAGGGTTCTTCCAAGCTAAACTCATCCTCCACTACATTCTTCTCCACAAGAAATCAAACCATTACTTCAATCCCTTTCTTTTCTCTCTTTTCATATCTCAAAAAACCCACCACTTTCAGAGGTGAGACTTGTAAAAATTTGATTTTTGATCCATTTATCCAAATGGGGTTTCATTAAATTCTGTTTTGATTTCTGGGTTTTGATCAATTTTGTATTTTTCGTGAGATTTTTGTCCAAATCTGACCTTTGTTGTTGAAAAAGGAAGCATTTTTGAGAGAAAGTAAAGGAAAAGAAAAATGGTGAGGGGAAAAACTCAAATGAAGCGCATAGAGAATGCTACAAGCCGGCAAGTGACCTTCTCAAAGCGGAGAAATGGGCTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGGTACTTTTTTTCTTCCTTTATTTACAAAAACCTCTCTTCAAATCTCTCAAATCACCGTCCTTTTGGGGTTAATTCTTAATTAACTTATGTGTTTGTTTGTTTTCTTTTGGGCACTGTCTATTTCCCTTGGCTCTTCTATTTCTTTCTCTCTTTGCAATCAAATTAGTACTGCCGTCCTTCTCTTATTTACCTAACCCCAACAAGATTTGCATTAATGGGTCACTGCCTTAAACTCATTTCAAATCTTTTTTACTGTTCTTCCTGATCTAGGGCTTGTCTGGGGACTACATTATTTTGTTTGTTTCTTCTTGAGTAATTGAGGATCACTTTGTAAATTTGTTTTTCAACAATTTTTAAAAATAAATTTTGTATATTTTCAATGTATGTTCATAATATTTCATGTTATAAACTTATTCTAGTTTTGTTGTATTTAACTGAAGCATAATAATAATAATAATCATAAGGCTTAGAATCAAAAGTAGTCCTTAAAAGGAATGAAATTTCTCTATCTCCAAGGTCATTCTCAGGCTTTGTAGATGAACAAAAAAAAATAAAATAAAATAAAATAATTTAAGCAAATGCTAGGCTATCCAAAAACAGGAAGCTATAAGAACTTTAATAGGGACATGATTAAGAACATTTAGCTTCAGAATCCAATGGGAGATCAAATTTCACGATGCCCCATTTGGTTATTTAATTACACGCATGGCTTTGAAGGCCATATCCCAATGAACATGGGAAATCTTGGTCGTTCATTTTAAACTAACCCTTTGATTAAAGTTCCAATCTTTCCAATGAACAAAGGTTGAATGTTGTAATTGGATTAAAATTGGATTAAAATGAGTAATTAATATTAAGTTCTAAGTTTGAATGTGGAGTTAATTTTGTTGTTGGGATGGAGATGTTTCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATTATGTGTACAAACAACCAAGGTTTAGAAGATGTGCAGGTTGGTTGATTCTAATACACATTCATGTTTGTGGTTCCTTATAAGCATCGAAAATCAAACAGAAACAAAAACATATCTGTTTTGTTTTTTTTTTTTATTATTATTTTTATTTATGTTTCATGTGTTTGAATTATCTGACGAACTGATGAATTTGTTTGGATTGAAAGTTGGAGAAGGAATTTGACTCATTTACCATGACTAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGGTTTGAGATTATTTTGAAGAAAAAAAAAAAAATTCTCTCCTATTTTCTTACATATTTATTAATCTACAAACATGCTGAAGCTCTCATGAAATAGTACAGAAAATTAATGGGAGATGGCTTGGATTTGTGCTCCATGGAAGAGTTACAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACAAAAATTAGGTCAAGAAAGGTACATTCATGTCTCAGATTCTAAAACATTTCCCCTTTTTAGATTTGTTCTTATTTTGTTTCAATTTCAGTATCAATTACTGAAGGAAGAAATTACGAAGCTGAAGGAAGAGGTAATTTTCATAACATTATTTACATAAATGAATTAAAACTATTGGTGATTTGAATTTTGATTTGGTGAATAGGAGAAAATGTTGCTGGAAGAAAATGCAGCTCTCCTGAAGAAGGTTAAGCATTCTTTTTTGTTTTGATTAATGTCAATTTCCTTACAACTGTTCCTCGTACAAATCCATAAAATTCAAACAATAAAATGAATGTTTTTTCAGGTTGGAAGTGAATGGAACCGCCACAGACAGAGCCATGGATTGTAAAATCCCCAACTTTCACAGCCATCAGACAGAAGAGTCAGCATTGACTCCTTGTGTAGATATCTTCATAATCAACCCACTTAACTTAAAAAAAACACAAGCTTGGAGTAACCCCAAAAAAAAGGAGTTTTTTACAGCAAGTATTTAACACTAAAAAGTGAAACCAAAAATAATAGTTCTGAATAAAATGTTGAATTAAAACTGTTTACGAGGCAATCAAACTACTGTATCTAATTAGGAACTTCCTGTCGGATAATGTGTTTCCACTTGTTTTTTCCATGTGTTCACTGATACCCAATAACATTGTGATTGTTCTCTTTTAGTTACTTTGCTTTAAAAAAAAATGTGGAAATTTGGTGGTTTAATGAAATCATAATTAAGTTAAGTTAGGGTTATGGCCTTTTCTCTCCCATGTGCAGTATCGTACACAGAGATTGAAGCTCCCAAAAGTTGAACCCTAATTTGGAA

mRNA sequence

CAAATTCTCTTTCCTTCTAAGCCTTTTTTCTTCTTCTTCTTCTTCTTCATCTTCTCTTACATTTCTAGGGTTCTTCCAAGCTAAACTCATCCTCCACTACATTCTTCTCCACAAGAAATCAAACCATTACTTCAATCCCTTTCTTTTCTCTCTTTTCATATCTCAAAAAACCCACCACTTTCAGAGGAAGCATTTTTGAGAGAAAGTAAAGGAAAAGAAAAATGGTGAGGGGAAAAACTCAAATGAAGCGCATAGAGAATGCTACAAGCCGGCAAGTGACCTTCTCAAAGCGGAGAAATGGGCTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATTATGTGTACAAACAACCAAGGTTTAGAAGATGTGCAGTTGGAGAAGGAATTTGACTCATTTACCATGACTAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAATTAATGGGAGATGGCTTGGATTTGTGCTCCATGGAAGAGTTACAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACAAAAATTAGGTCAAGAAAGTATCAATTACTGAAGGAAGAAATTACGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCTCTCCTGAAGAAGGTTGGAAGTGAATGGAACCGCCACAGACAGAGCCATGGATTGTAAAATCCCCAACTTTCACAGCCATCAGACAGAAGAGTCAGCATTGACTCCTTGTGTAGATATCTTCATAATCAACCCACTTAACTTAAAAAAAACACAAGCTTGGAGTAACCCCAAAAAAAAGGAGTTTTTTACAGCAAGTATTTAACACTAAAAAGTGAAACCAAAAATAATAGTTCTGAATAAAATGTTGAATTAAAACTGTTTACGAGGCAATCAAACTACTGTATCTAATTAGGAACTTCCTGTCGGATAATGTGTTTCCACTTGTTTTTTCCATGTGTTCACTGATACCCAATAACATTGTGATTGTTCTCTTTTAGTTACTTTGCTTTAAAAAAAAATGTGGAAATTTGGTGGTTTAATGAAATCATAATTAAGTTAAGTTAGGGTTATGGCCTTTTCTCTCCCATGTGCAGTATCGTACACAGAGATTGAAGCTCCCAAAAGTTGAACCCTAATTTGGAA

Coding sequence (CDS)

ATGGTGAGGGGAAAAACTCAAATGAAGCGCATAGAGAATGCTACAAGCCGGCAAGTGACCTTCTCAAAGCGGAGAAATGGGCTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATTATGTGTACAAACAACCAAGGTTTAGAAGATGTGCAGTTGGAGAAGGAATTTGACTCATTTACCATGACTAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAATTAATGGGAGATGGCTTGGATTTGTGCTCCATGGAAGAGTTACAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACAAAAATTAGGTCAAGAAAGTATCAATTACTGAAGGAAGAAATTACGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCTCTCCTGAAGAAGGTTGGAAGTGAATGGAACCGCCACAGACAGAGCCATGGATTGTAA

Protein sequence

MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLCSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHRQSHGL
Homology
[Close]
BLAST of Carg02494-RA vs. NCBI nr
Match: KAG7036076.1 (Agamous-like MADS-box protein AGL19 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.5 bits (911), Expect = 2.7e-94
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC
Sbjct: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180
           SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR
Sbjct: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180

Query: 181 QSHGL 186
           QSHGL
Sbjct: 181 QSHGL 185

[Close]
BLAST of Carg02494-RA vs. NCBI nr
Match: XP_022958243.1 (agamous-like MADS-box protein AGL19 [Cucurbita moschata] >XP_022958245.1 agamous-like MADS-box protein AGL19 [Cucurbita moschata] >KAG6606133.1 Agamous-like MADS-box protein AGL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-90
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC
Sbjct: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180
           SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNR  
Sbjct: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRQE 180

Query: 181 QS 183
           ++
Sbjct: 181 EA 182

[Close]
BLAST of Carg02494-RA vs. NCBI nr
Match: XP_023533585.1 (agamous-like MADS-box protein AGL19 [Cucurbita pepo subsp. pepo] >XP_023533586.1 agamous-like MADS-box protein AGL19 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.3 bits (856), Expect = 6.5e-88
Identity = 175/182 (96.15%), Postives = 177/182 (97.25%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGD LDLC
Sbjct: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDSLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180
           SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEW    
Sbjct: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWKHQD 180

Query: 181 QS 183
           ++
Sbjct: 181 EA 182

[Close]
BLAST of Carg02494-RA vs. NCBI nr
Match: XP_022995703.1 (agamous-like MADS-box protein AGL19 [Cucurbita maxima] >XP_022995704.1 agamous-like MADS-box protein AGL19 [Cucurbita maxima] >XP_022995705.1 agamous-like MADS-box protein AGL19 [Cucurbita maxima])

HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82
Identity = 168/182 (92.31%), Postives = 173/182 (95.05%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTKE+MC+NNQGLEDVQLEK+     MTKKLQHLEVCKRKLMGDGLDLC
Sbjct: 61  SMNKTIDRYQNRTKEMMCSNNQGLEDVQLEKD----CMTKKLQHLEVCKRKLMGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180
           SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEW    
Sbjct: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWKHQE 178

Query: 181 QS 183
           ++
Sbjct: 181 EA 178

[Close]
BLAST of Carg02494-RA vs. NCBI nr
Match: XP_022156217.1 (agamous-like MADS-box protein AGL19 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 4.0e-77
Identity = 155/175 (88.57%), Postives = 170/175 (97.14%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFS+ 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           S+NKTIDRYQNRTKE+M ++N  LEDVQLEKE+DSF+MTKKL+HLEVCKRKL+GDGLDLC
Sbjct: 61  SINKTIDRYQNRTKELMSSSNTALEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSE 176
           S+EELQQLERQ+ERSL+KIRSRKYQ+LKEEI KLKEEEKMLLEENAALLKKVG+E
Sbjct: 121 SIEELQQLERQLERSLSKIRSRKYQMLKEEIVKLKEEEKMLLEENAALLKKVGTE 175

[Close]
BLAST of Carg02494-RA vs. ExPASy Swiss-Prot
Match: O82743 (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.4e-53
Identity = 113/171 (66.08%), Postives = 140/171 (81.87%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFS+ 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           S+  TI+RYQ R KEI   NN    D   +   ++  +TKK++ LE+ KRKL+G+G+D C
Sbjct: 61  SIAATIERYQRRIKEI--GNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDAC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
           S+EELQQLE Q++RSL++IR++KYQLL+EEI KLK EE+ L++EN  L +K
Sbjct: 121 SIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169

[Close]
BLAST of Carg02494-RA vs. ExPASy Swiss-Prot
Match: Q38838 (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 6.6e-51
Identity = 109/172 (63.37%), Postives = 141/172 (81.98%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SN 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF S+
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  CSMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDL 120
            S+ KT++RYQ R +++   +N    D   + + +++ + +K++HLE+  RK+MG+GLD 
Sbjct: 61  SSIPKTVERYQKRIQDL--GSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDA 120

Query: 121 CSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
            S+EELQQLE Q++RSL KIR++KYQLL+EE  KLKE+E+ L+ EN  L++K
Sbjct: 121 SSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170

[Close]
BLAST of Carg02494-RA vs. ExPASy Swiss-Prot
Match: O64645 (MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-49
Identity = 111/189 (58.73%), Postives = 146/189 (77.25%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFSP+GKLYEF++ 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           +M  TIDRY   TK+ + T     E++Q   ++++  M KK++ LE  KRKL+G+G+  C
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQ-HLKYEAANMMKKIEQLEASKRKLLGEGIGTC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSE----W 180
           S+EELQQ+E+Q+E+S+  IR+RK Q+ KE+I +LK++EK L  EN  L +K GS     W
Sbjct: 121 SIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVW 180

Query: 181 -NRHRQSHG 185
            N++++S G
Sbjct: 181 SNKNQESTG 188

[Close]
BLAST of Carg02494-RA vs. ExPASy Swiss-Prot
Match: Q9XJ60 (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRGKLYEF++ 
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKE---FDSFTMTKKLQHLEVCKRKLMGDGL 120
           S  KTI+RY+  TKE     N G + VQ + E    D+  + KKL+ LE  KRKL+G+ L
Sbjct: 61  STQKTIERYRTYTKE-----NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKL 120

Query: 121 DLCSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
           D CS+EEL  LE ++ERSL  IR RK +LL+E++ KL+E+E  L ++N  L +K
Sbjct: 121 DECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169

[Close]
BLAST of Carg02494-RA vs. ExPASy Swiss-Prot
Match: Q9FIS1 (MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.4e-45
Identity = 101/171 (59.06%), Postives = 132/171 (77.19%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGK +MK+IENATSRQVTFSKRRNGLLKKA+ELSVLCDA+++LIIFS RG+LYEFS+ 
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
            M KTI+RY+  TK+   +N+     +Q  K+  S  +T K++ LE  KRKL+G G+  C
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMIT-KIELLEFHKRKLLGQGIASC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
           S+EELQ+++ Q++RSL K+R RK QL KE++ KLK +EK LLEEN  L +K
Sbjct: 121 SLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK 170

[Close]
BLAST of Carg02494-RA vs. ExPASy TrEMBL
Match: A0A6J1H2Z4 (agamous-like MADS-box protein AGL19 OS=Cucurbita moschata OX=3662 GN=LOC111459529 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC
Sbjct: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180
           SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNR  
Sbjct: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRQE 180

Query: 181 QS 183
           ++
Sbjct: 181 EA 182

[Close]
BLAST of Carg02494-RA vs. ExPASy TrEMBL
Match: A0A6J1K4Q4 (agamous-like MADS-box protein AGL19 OS=Cucurbita maxima OX=3661 GN=LOC111491162 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.8e-83
Identity = 168/182 (92.31%), Postives = 173/182 (95.05%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTKE+MC+NNQGLEDVQLEK+     MTKKLQHLEVCKRKLMGDGLDLC
Sbjct: 61  SMNKTIDRYQNRTKEMMCSNNQGLEDVQLEKD----CMTKKLQHLEVCKRKLMGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180
           SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEW    
Sbjct: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWKHQE 178

Query: 181 QS 183
           ++
Sbjct: 181 EA 178

[Close]
BLAST of Carg02494-RA vs. ExPASy TrEMBL
Match: A0A6J1DRG2 (agamous-like MADS-box protein AGL19 OS=Momordica charantia OX=3673 GN=LOC111023156 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.9e-77
Identity = 155/175 (88.57%), Postives = 170/175 (97.14%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFS+ 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           S+NKTIDRYQNRTKE+M ++N  LEDVQLEKE+DSF+MTKKL+HLEVCKRKL+GDGLDLC
Sbjct: 61  SINKTIDRYQNRTKELMSSSNTALEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSE 176
           S+EELQQLERQ+ERSL+KIRSRKYQ+LKEEI KLKEEEKMLLEENAALLKKVG+E
Sbjct: 121 SIEELQQLERQLERSLSKIRSRKYQMLKEEIVKLKEEEKMLLEENAALLKKVGTE 175

[Close]
BLAST of Carg02494-RA vs. ExPASy TrEMBL
Match: A0A1S3AT26 (agamous-like MADS-box protein AGL19 OS=Cucumis melo OX=3656 GN=LOC103482693 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 154/183 (84.15%), Postives = 172/183 (93.99%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTK++M +N+   EDVQLEKE+DSF+MTKKL+HLEVCKRKL+GDGLDLC
Sbjct: 61  SMNKTIDRYQNRTKDLMSSNSTATEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHR 180
           S++ELQQLERQ+ERSL+KIRSRKYQ+LK+EITKLKEEEK LLEENAAL  KV SE ++ +
Sbjct: 121 SIDELQQLERQLERSLSKIRSRKYQMLKDEITKLKEEEKKLLEENAALQIKVRSESSKKQ 180

Query: 181 QSH 184
            S+
Sbjct: 181 DSN 183

[Close]
BLAST of Carg02494-RA vs. ExPASy TrEMBL
Match: A0A6J1I258 (agamous-like MADS-box protein AGL19 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469153 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.3e-73
Identity = 149/175 (85.14%), Postives = 163/175 (93.14%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSN 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNF 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           SMNKTIDRYQNRTK++M +NN  +ED+QLEKE DSFT+TKKL+HLEV KRKL+G GLD C
Sbjct: 61  SMNKTIDRYQNRTKDLMSSNNTAVEDLQLEKELDSFTITKKLEHLEVSKRKLLGGGLDSC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSE 176
           S++ELQQLERQ+ERSLTKIRSRKYQ+LKEEI KLKEEEK+LLEENAAL  KVG E
Sbjct: 121 SIDELQQLERQLERSLTKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVKVGRE 175

[Close]
BLAST of Carg02494-RA vs. TAIR 10
Match: AT4G22950.1 (AGAMOUS-like 19 )

HSP 1 Score: 208.8 bits (530), Expect = 3.8e-54
Identity = 113/171 (66.08%), Postives = 140/171 (81.87%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFS+ 
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           S+  TI+RYQ R KEI   NN    D   +   ++  +TKK++ LE+ KRKL+G+G+D C
Sbjct: 61  SIAATIERYQRRIKEI--GNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDAC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
           S+EELQQLE Q++RSL++IR++KYQLL+EEI KLK EE+ L++EN  L +K
Sbjct: 121 SIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169

[Close]
BLAST of Carg02494-RA vs. TAIR 10
Match: AT4G11880.1 (AGAMOUS-like 14 )

HSP 1 Score: 201.8 bits (512), Expect = 4.7e-52
Identity = 109/172 (63.37%), Postives = 141/172 (81.98%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SN 60
           MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF S+
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  CSMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDL 120
            S+ KT++RYQ R +++   +N    D   + + +++ + +K++HLE+  RK+MG+GLD 
Sbjct: 61  SSIPKTVERYQKRIQDL--GSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDA 120

Query: 121 CSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
            S+EELQQLE Q++RSL KIR++KYQLL+EE  KLKE+E+ L+ EN  L++K
Sbjct: 121 SSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170

[Close]
BLAST of Carg02494-RA vs. TAIR 10
Match: AT2G45660.1 (AGAMOUS-like 20 )

HSP 1 Score: 197.6 bits (501), Expect = 8.8e-51
Identity = 111/189 (58.73%), Postives = 146/189 (77.25%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFSP+GKLYEF++ 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
           +M  TIDRY   TK+ + T     E++Q   ++++  M KK++ LE  KRKL+G+G+  C
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQ-HLKYEAANMMKKIEQLEASKRKLLGEGIGTC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSE----W 180
           S+EELQQ+E+Q+E+S+  IR+RK Q+ KE+I +LK++EK L  EN  L +K GS     W
Sbjct: 121 SIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVW 180

Query: 181 -NRHRQSHG 185
            N++++S G
Sbjct: 181 SNKNQESTG 188

[Close]
BLAST of Carg02494-RA vs. TAIR 10
Match: AT5G62165.1 (AGAMOUS-like 42 )

HSP 1 Score: 182.2 bits (461), Expect = 3.8e-46
Identity = 101/171 (59.06%), Postives = 132/171 (77.19%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGK +MK+IENATSRQVTFSKRRNGLLKKA+ELSVLCDA+++LIIFS RG+LYEFS+ 
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
            M KTI+RY+  TK+   +N+     +Q  K+  S  +T K++ LE  KRKL+G G+  C
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMIT-KIELLEFHKRKLLGQGIASC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
           S+EELQ+++ Q++RSL K+R RK QL KE++ KLK +EK LLEEN  L +K
Sbjct: 121 SLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK 170

[Close]
BLAST of Carg02494-RA vs. TAIR 10
Match: AT5G62165.2 (AGAMOUS-like 42 )

HSP 1 Score: 182.2 bits (461), Expect = 3.8e-46
Identity = 101/171 (59.06%), Postives = 132/171 (77.19%), Query Frame = 0 

Query: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNC 60
           MVRGK +MK+IENATSRQVTFSKRRNGLLKKA+ELSVLCDA+++LIIFS RG+LYEFS+ 
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLC 120
            M KTI+RY+  TK+   +N+     +Q  K+  S  +T K++ LE  KRKL+G G+  C
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMIT-KIELLEFHKRKLLGQGIASC 120

Query: 121 SMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKK 172
           S+EELQ+++ Q++RSL K+R RK QL KE++ KLK +EK LLEEN  L +K
Sbjct: 121 SLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK 170

The following BLAST results are available for this feature:
BLAST of Carg02494-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036076.12.7e-94100.00Agamous-like MADS-box protein AGL19 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022958243.14.1e-9097.80agamous-like MADS-box protein AGL19 [Cucurbita moschata] >XP_022958245.1 agamous... [more]
XP_023533585.16.5e-8896.15agamous-like MADS-box protein AGL19 [Cucurbita pepo subsp. pepo] >XP_023533586.1... [more]
XP_022995703.11.4e-8292.31agamous-like MADS-box protein AGL19 [Cucurbita maxima] >XP_022995704.1 agamous-l... [more]
XP_022156217.14.0e-7788.57agamous-like MADS-box protein AGL19 [Momordica charantia][more]
BLAST of Carg02494-RA vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O827435.4e-5366.08Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=... [more]
Q388386.6e-5163.37Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=... [more]
O646451.2e-4958.73MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1[more]
Q9XJ601.1e-4562.07MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q9FIS15.4e-4559.06MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1[more]
BLAST of Carg02494-RA vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H2Z42.0e-9097.80agamous-like MADS-box protein AGL19 OS=Cucurbita moschata OX=3662 GN=LOC11145952... [more]
A0A6J1K4Q46.8e-8392.31agamous-like MADS-box protein AGL19 OS=Cucurbita maxima OX=3661 GN=LOC111491162 ... [more]
A0A6J1DRG21.9e-7788.57agamous-like MADS-box protein AGL19 OS=Momordica charantia OX=3673 GN=LOC1110231... [more]
A0A1S3AT262.1e-7684.15agamous-like MADS-box protein AGL19 OS=Cucumis melo OX=3656 GN=LOC103482693 PE=4... [more]
A0A6J1I2588.3e-7385.14agamous-like MADS-box protein AGL19 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
BLAST of Carg02494-RA vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G22950.13.8e-5466.08AGAMOUS-like 19 [more]
AT4G11880.14.7e-5263.37AGAMOUS-like 14 [more]
AT2G45660.18.8e-5158.73AGAMOUS-like 20 [more]
AT5G62165.13.8e-4659.06AGAMOUS-like 42 [more]
AT5G62165.23.8e-4659.06AGAMOUS-like 42 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..171
NoneNo IPR availableCOILSCoilCoilcoord: 122..142
NoneNo IPR availablePANTHERPTHR11945:SF341MADS-BOX PROTEIN SOC1coord: 1..177
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..177
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 65.66
coord: 3..23
score: 66.59
coord: 23..38
score: 83.07
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 1.1E-39
score: 147.8
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 6.4E-27
score: 92.8
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 31.286396
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..83
e-value: 1.2E-29
score: 104.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 3..87
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 97..172
e-value: 1.5E-21
score: 76.3
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 88..178
score: 13.016786
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 3..71
e-value: 7.82941E-44
score: 138.454

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg02494Carg02494gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02494-RA:1Carg02494-RA:1exon
Carg02494-RA:2Carg02494-RA:2exon
Carg02494-RA:3Carg02494-RA:3exon
Carg02494-RA:4Carg02494-RA:4exon
Carg02494-RA:5Carg02494-RA:5exon
Carg02494-RA:6Carg02494-RA:6exon
Carg02494-RA:7Carg02494-RA:7exon
Carg02494-RA:8Carg02494-RA:8exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02494-RA:five_prime_utrCarg02494-RA:five_prime_utrfive_prime_UTR
Carg02494-RA:five_prime_utrCarg02494-RA:five_prime_utr_2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02494-RA:cdsCarg02494-RA:cdsCDS
Carg02494-RA:cdsCarg02494-RA:cds_2CDS
Carg02494-RA:cdsCarg02494-RA:cds_3CDS
Carg02494-RA:cdsCarg02494-RA:cds_4CDS
Carg02494-RA:cdsCarg02494-RA:cds_5CDS
Carg02494-RA:cdsCarg02494-RA:cds_6CDS
Carg02494-RA:cdsCarg02494-RA:cds_7CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg02494-RA:three_prime_utrCarg02494-RA:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg02494-RACarg02494-RA-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding