Carg02404-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02404-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	tyrosine-specific transport protein 1-like isoform X3
Location	Carg_Chr15: 2198510 .. 2200337 (+)
Sequence length	983
RNA-Seq Expression	Carg02404-RA
Synteny	Carg02404-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTTTTAGAGTCACCTTCTTCGCCTCTGCATTTGGCTTCCATGAATTTACACTCCCGTCATCATCTCTTCCACTTTATTTTGCCCTAAAACCCACGGTCGATGCCTGCAAGTTCTTTCACGGTCGCCATTGCCGTCCCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGGTAACGTGCTTGGATTTGATTATGCTTCTTTTTCCTCTATTTAATCCATCAATTTAGCGTGTTTTCACGTCTTTCTTGGGTGAATCTTGAGTTTTGCTTGGTGTTTCAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAAAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAACTATGGCGCAGGAGACTCTGGGGGACTTTGGAACCCTAGCCACTGTTGCCTATGTTTTCTTGGGCTACACTTCTATGGTGGCCTATGTTTCCAAGTCGGGTGAGATCCTTCTCTAATCGTTCAATCTTCCATCTCCACTTACAGGCTACCTTTTCTCTTTGGTTTTTTCTCTGCTAGCCATAGATCAAATCAACCAATGGCTTACTGCTTGCATGAAAGGTAACTTCAGGATGTGAACCAGTATTATTGCCTCTCACCTCGAATCAGTTCTAATTTTCGGGACAAAAATTCAATTGAATGTTTAAAACATATCTTTTTCCGTGGAGAACAGCTCTTATGTTTTAATGCTGTACATAATGGTTCCAAATGTAGTATAATTTTCTATTGATATTGGATCTTAGAATCCGTTTTATAGACAAAAATAGAAAACTGTTCTGCAATCATTCTCTCAAATTCGCCGTATGTATTTTATACAAATGTGGGTAAAAATGATTAATCTCTAAGAACAAACAGAAGTCTCCTTTTATAGTCTGGAGGATGGAGTAATTATGAATATCAAATTCCTTTCCTTAATCGTTTTTTTGGTCAATTATTTCCCCCAAGCATACAATCTGTTCAATGGTCTCTCACCTTAAATTAGAATGCTCTTATTGTTAACCATTTCCCTTACTTTTATCCTTTTGTTTTTCAGTTTTTTTCCTCCTTTCCTGCGTTAGTTACATGAATTTGCTGAACCCCTGGAAAAAAATTTCGTGCAAGGAAAAACGGGCTATATCCTAGAATTAGACTCTTGAAAGTTTATGTCAAGCAAATTGATTTGTTTTTTCCGAGGTTTTGATCTTCAGTACTGCAGTAGACTAATACATATCAAAGTTTCTTTACAAATTCTTAACAGAGGAAAACTATGGAAATACCATATTGCTTATTTATGTGCATGAGTCTCCATCTTCAACAGATCGAGCCTGAGCGGAACTTGCTGCGAGCTGCTTGGTTTGGAAACAATCTTGAGATACACATTATGACATGTATGCAGTATCCGTCTCATAAATTGCAAACCCAAGGACCGAAATTTGCAGTGAGTTGTCATGGGGAAGGCCATAGAATGCCTCAGGCCAAGGATCAGAAAAAAAGGAGAAAGAAGAGCTGAGAAAAGACAAGATAGTGGAGATGGATGGCATTTTTTTTCCAAAGTGCTGCAAGTTAATGCAGTTGTTTCACTTATTCTTTATACTTCTCTGGAGTGGGCGAGTTTATATAGAGCTGAAGGAGATTGAAGCTCACTGAAATATCTAGTTATAAACCTTAATGACGAGTTACTTTCACTAAACCTCTGGGTCCTATGCCCTGACCCAGAAAGCAGGAGGAATAATATTTTGTGTTTGGAAAGAATTTGATATAATGCAATTATGCAGGCGAGTCTTAGAATTCCA

mRNA sequence

AAACTTTTAGAGTCACCTTCTTCGCCTCTGCATTTGGCTTCCATGAATTTACACTCCCGTCATCATCTCTTCCACTTTATTTTGCCCTAAAACCCACGGTCGATGCCTGCAAGTTCTTTCACGGTCGCCATTGCCGTCCCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAAAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAACTATGGCGCAGGAGACTCTGGGGGACTTTGGAACCCTAGCCACTGTTGCCTATGTTTTCTTGGGCTACACTTCTATGGTGGCCTATGTTTCCAAGTCGGGTGAGATCCTTCTCTAATCGTTCAATCTTCCATCTCCACTTACAGGCTACCTTTTCTCTTTGGTTTTTTCTCTGCTAGCCATAGATCAAATCAACCAATGGCTTACTGCTTGCATGAAAGATCGAGCCTGAGCGGAACTTGCTGCGAGCTGCTTGGTTTGGAAACAATCTTGAGATACACATTATGACATGTATGCAGTATCCGTCTCATAAATTGCAAACCCAAGGACCGAAATTTGCAGTGAGTTGTCATGGGGAAGGCCATAGAATGCCTCAGGCCAAGGATCAGAAAAAAAGGAGAAAGAAGAGCTGAGAAAAGACAAGATAGTGGAGATGGATGGCATTTTTTTTCCAAAGTGCTGCAAGTTAATGCAGTTGTTTCACTTATTCTTTATACTTCTCTGGAGTGGGCGAGTTTATATAGAGCTGAAGGAGATTGAAGCTCACTGAAATATCTAGTTATAAACCTTAATGACGAGTTACTTTCACTAAACCTCTGGGTCCTATGCCCTGACCCAGAAAGCAGGAGGAATAATATTTTGTGTTTGGAAAGAATTTGATATAATGCAATTATGCAGGCGAGTCTTAGAATTCCA

Coding sequence (CDS)

ATGCCTGCAAGTTCTTTCACGGTCGCCATTGCCGTCCCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAAAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAACTATGGCGCAGGAGACTCTGGGGGACTTTGGAACCCTAGCCACTGTTGCCTATGTTTTCTTGGGCTACACTTCTATGGTGGCCTATGTTTCCAAGTCGGGTGAGATCCTTCTCTAA

Protein sequence

MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL

Homology

[Close]

BLAST of Carg02404-RA vs. NCBI nr
Match: KAG7016288.1 (hypothetical protein SDJN02_21394 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60
           MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS
Sbjct: 1   MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60

Query: 61  VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL 101
           VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL
Sbjct: 61  VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL 100

[Close]

BLAST of Carg02404-RA vs. NCBI nr
Match: KAG6578760.1 (hypothetical protein SDJN03_23208, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 3.8e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60
          MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS
Sbjct: 1  MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60

Query: 61 VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS 96
          VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS
Sbjct: 61 VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS 95

[Close]

BLAST of Carg02404-RA vs. NCBI nr
Match: XP_023550384.1 (uncharacterized protein LOC111808551 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 4.7e-40
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60
           MPA+SF +AIAV MFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEA+S
Sbjct: 1   MPATSFMIAIAVAMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAVS 60

Query: 61  VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL 101
           VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS   LL
Sbjct: 61  VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSVFFLL 100

[Close]

BLAST of Carg02404-RA vs. NCBI nr
Match: XP_023550385.1 (uncharacterized protein LOC111808551 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 6.1e-40
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60
          MPA+SF +AIAV MFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEA+S
Sbjct: 1  MPATSFMIAIAVAMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAVS 60

Query: 61 VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS 96
          VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS
Sbjct: 61 VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS 95

[Close]

BLAST of Carg02404-RA vs. NCBI nr
Match: XP_022939144.1 (uncharacterized protein LOC111445140 [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 49  ERRGETGIEAISVRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL 101
           +RRGETGI AISVRTMAQETLGDFGTLAT+AYVFLGYTSMVAYVSKSGEILL
Sbjct: 87  KRRGETGIGAISVRTMAQETLGDFGTLATIAYVFLGYTSMVAYVSKSGEILL 138

[Close]

BLAST of Carg02404-RA vs. ExPASy TrEMBL
Match: A0A6J1FG92 (uncharacterized protein LOC111445140 OS=Cucurbita moschata OX=3662 GN=LOC111445140 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 49  ERRGETGIEAISVRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL 101
           +RRGETGI AISVRTMAQETLGDFGTLAT+AYVFLGYTSMVAYVSKSGEILL
Sbjct: 87  KRRGETGIGAISVRTMAQETLGDFGTLATIAYVFLGYTSMVAYVSKSGEILL 138

[Close]

BLAST of Carg02404-RA vs. ExPASy TrEMBL
Match: A0A1S4E1A6 (tyrosine-specific transport protein 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496418 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 34  LVFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYV 93
           +V   R KK++ GEE   GETG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+
Sbjct: 137 VVLWRRKKKKKKGEE---GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYI 196

Query: 94  SKSGEILL 101
           SKSGEILL
Sbjct: 197 SKSGEILL 201

[Close]

BLAST of Carg02404-RA vs. ExPASy TrEMBL
Match: A0A1S4E201 (tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496418 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 34  LVFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYV 93
           +V   R KK++ GEE   GETG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+
Sbjct: 137 VVLWRRKKKKKKGEE---GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYI 196

Query: 94  SKSGEILL 101
           SKSGEILL
Sbjct: 197 SKSGEILL 201

[Close]

BLAST of Carg02404-RA vs. ExPASy TrEMBL
Match: A0A1S4E1A5 (tyrosine-specific transport protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496418 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 34  LVFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYV 93
           +V   R KK++ GEE   GETG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+
Sbjct: 137 VVLWRRKKKKKKGEE---GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYI 196

Query: 94  SKSGEILL 101
           SKSGEILL
Sbjct: 197 SKSGEILL 201

[Close]

BLAST of Carg02404-RA vs. ExPASy TrEMBL
Match: A0A0A0KHF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405310 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 35  VFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVS 94
           V L R KK+E   EE  GETG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+S
Sbjct: 137 VVLWRRKKKEKKAEE--GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYIS 196

Query: 95  KSGEILL 101
           KSGEILL
Sbjct: 197 KSGEILL 201

The following BLAST results are available for this feature:

BLAST of Carg02404-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016288.1	1.1e-44	100.00	hypothetical protein SDJN02_21394 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6578760.1	3.8e-42	100.00	hypothetical protein SDJN03_23208, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023550384.1	4.7e-40	92.00	uncharacterized protein LOC111808551 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023550385.1	6.1e-40	94.74	uncharacterized protein LOC111808551 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022939144.1	4.7e-16	94.23	uncharacterized protein LOC111445140 [Cucurbita moschata]	[more]

BLAST of Carg02404-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg02404-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG92	2.3e-16	94.23	uncharacterized protein LOC111445140 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A1S4E1A6	1.1e-15	76.47	tyrosine-specific transport protein 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
A0A1S4E201	1.1e-15	76.47	tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A1S4E1A5	1.1e-15	76.47	tyrosine-specific transport protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KHF6	1.5e-15	79.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405310 PE=4 SV=1	[more]

BLAST of Carg02404-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018227	Amino acid/polyamine transporter 2	PFAM	PF03222	Trp_Tyr_perm	coord: 58..99 e-value: 9.6E-6 score: 24.9
None	No IPR available	PANTHER	PTHR32195:SF24	TRYPTOPHAN/TYROSINE PERMEASE	coord: 37..99
None	No IPR available	PANTHER	PTHR32195	FAMILY NOT NAMED	coord: 37..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02404	Carg02404	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02404-RA:1	Carg02404-RA:1	exon
Carg02404-RA:2	Carg02404-RA:2	exon
Carg02404-RA:3	Carg02404-RA:3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02404-RA:five_prime_utr	Carg02404-RA:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02404-RA:cds	Carg02404-RA:cds	CDS
Carg02404-RA:cds	Carg02404-RA:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02404-RA:three_prime_utr	Carg02404-RA:three_prime_utr	three_prime_UTR
Carg02404-RA:three_prime_utr	Carg02404-RA:three_prime_utr_2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02404-RA	Carg02404-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane