Carg02184-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg02184-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclin-B1-2-like
Location	Carg_Chr15: 1105883 .. 1108292 (+)
Sequence length	426
RNA-Seq Expression	Carg02184-RA
Synteny	Carg02184-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCGAAGGCCATTCCCCATGAAATCGGAGGGATCCAGAATGATGCCCTTCGATTTGGGCTCCAAGGCGTGAAGAGCGATCTCGTTGGATCTCATCCTGTTGAATCCATCTATGAAACTGTAATTTCCCCTCTTCCTTCTCTCTCAGTTTTTTCAATCTAAGTTGTCTCACTTGGTTTCTATATCGCTTCGGCTGTTTAGTAATTGCCATTAGACAAGATAATCTGGGTTCGATGGAGCTGATGAACCACTTGTTTGTTTAAGTTACTCGGATTAGAAACTTGTAGCTTCATGTTTTACTTCCTGGTTTTTTTGCTCAAATTTCTCATTGTACTCCCTTATTTTGAAATTCTTGGGGTCTGGTTTTATCAATTGTTGTAAAATGGTGCTGAGAATTTCATTTCAGAGTGATTTATCTAGTGTCCCATTTGACCTCTGTATAGAAAAAACTACGAGATTCCACTTCGGTCGGAGAGGGGAACGAAATATTCTTTATAAGGATATGGAAACCTCTCCCTAGTAGACACGTTTCAAAACCGTGAGACCAACGGCGATACGTAACGAACCAAAGAGGACAATATCTGCTAGCAGTGACTTTGGATTGTTACTAATGGGATTAGAGCTGGACACTGTGAATTGAGAGGTCCAGGAGAAGGGAACAAGTGCCAAGGACGCTGGGTCCTGAAAGGAGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCTTTGTAAGGGTGTGGAAACCTCTCCCTAGTAGACGAGTTTCAAAATTGAGAGGCCAACGACGATAGGTAACGAGCCAAAGAGAACAATATCTGCTAGTAGTGGCCTTAGATTCGTAGAGAACAATATCTGCTAGTAGTGGCCTTGGATTCGTTACAAATGGGATTAGAGCTAGACACTATGAATTGAGAGGTCCTGGAGAAGGGAACAAGTGTCAGTGAGGACGCTAGGTCCCAAAAGGGGTGGATTGTGAGATCCCACGTCGGTTGAAGAGGGGAACGATGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAATAGACACGTTTTAAAATCATGAGGGGGATGAACCACAATACATTCCTTTGAATACTTGGGATGAAAAAACAAGCTCGATCTCGTTGGTTAAATTAATTTTTTTCTTGATATAGACGAGAAGAACAGAAGAAGAGATGAAAAGGAAAATTCTGGTGAATACATATGGATCTGCTTTTCCATTGAAGATGGATTTTGAGAGGCAAATTCTTTCTCGGTAAGGCCACTCTTCTTGTATTGATGCTGTATCTCTCTTGGTGTGTTCTAAATTGGAGCACTTGTTTATTTTAACTTAAAACTACTGCAGATTTCAAAGGCCTCTAGGACCTATTCCATCTTCAATGTTGGGTTTGGAGGCTCTTACTGGAAGCTTGGATGACTTTGGCTTTGAAGATTATCTAAATGGTAAAATAAATCCATATAACTCATCTGATTCTGTTCTCTATTATACATTTTCATCATTAGTTAGAGCTTTTTCATTGCCTTAAATATTTCTTTTGAGGGTAATGAGTTTTTTTAGGACTCTTATTAAGTCACCCAAGTGTCTACATGGTTGAGGAAAGGGAAGGAGGGATCGAGTGATGTAAATGTGTAAGGGTCGAAATCCATAGTCGGGTATGTATGTGTTGTGTGATTCTGCGGGGGTGTCACAATCGCACTCTTGCGGCTACGGGACAGTGATTGTGCGACACTTGTTCTAATTCGGCGAACAAGTCAGCCGTGAGAAATTCTGACTTTGTAGACTATGACAGCGTATTGTAGAGCCTCAAGTCATGTTTAAGAGAAATATATTGGAAAACGTGAGTGAGGAAATACGTTGAAAACAATTTGAAAGAAAACAATGTTATAAACTAAAAGCGATTAGGCACGACTTTAATAGCATGATTAGTCATATCCCTCTATAGTACATTTCGCGGCATTTTAGCCTTGGCGGGTGTAGACATGATTTTGGTGATCGGTCATACACTCTCATGTTGACACAACATGAAAGAGTAAAGATATCTAAGATGAAAGCATGCAAAAGGGGTTTGGAATGGACATGCAGTCATGGACAAAACGTCTTGGACAAGCATGACCGTGACCGGGACATCCGACATAAGGAGGATGAAATACTTCGTGCTTTCTTTTTCACTTTGACTTAACATAATGAATCTCAATTGTGCAGTCCATCTGTCGCTTAAAATACACATTTTAGATAATAGTCTCTGCCAGTGTTAATCTATACACCTTGTTTATGTGAACGTGATCTGCAGACCCAAGGGAATCTGAATCTTTGAGGCCATTGGACATGCACCATGGAATGGAAGTCCGCCTTGGCCTGTCCAAGGGACCAGTTTGCCCAAGTTTCATATAA

mRNA sequence

ATGGAGTCTTCGAAGGCCATTCCCCATGAAATCGGAGGGATCCAGAATGATGCCCTTCGATTTGGGCTCCAAGGCGTGAAGAGCGATCTCGTTGGATCTCATCCTGTTGAATCCATCTATGAAACTACGAGAAGAACAGAAGAAGAGATGAAAAGGAAAATTCTGGTGAATACATATGGATCTGCTTTTCCATTGAAGATGGATTTTGAGAGGCAAATTCTTTCTCGATTTCAAAGGCCTCTAGGACCTATTCCATCTTCAATGTTGGGTTTGGAGGCTCTTACTGGAAGCTTGGATGACTTTGGCTTTGAAGATTATCTAAATGACCCAAGGGAATCTGAATCTTTGAGGCCATTGGACATGCACCATGGAATGGAAGTCCGCCTTGGCCTGTCCAAGGGACCAGTTTGCCCAAGTTTCATATAA

Coding sequence (CDS)

ATGGAGTCTTCGAAGGCCATTCCCCATGAAATCGGAGGGATCCAGAATGATGCCCTTCGATTTGGGCTCCAAGGCGTGAAGAGCGATCTCGTTGGATCTCATCCTGTTGAATCCATCTATGAAACTACGAGAAGAACAGAAGAAGAGATGAAAAGGAAAATTCTGGTGAATACATATGGATCTGCTTTTCCATTGAAGATGGATTTTGAGAGGCAAATTCTTTCTCGATTTCAAAGGCCTCTAGGACCTATTCCATCTTCAATGTTGGGTTTGGAGGCTCTTACTGGAAGCTTGGATGACTTTGGCTTTGAAGATTATCTAAATGACCCAAGGGAATCTGAATCTTTGAGGCCATTGGACATGCACCATGGAATGGAAGTCCGCCTTGGCCTGTCCAAGGGACCAGTTTGCCCAAGTTTCATATAA

Protein sequence

MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYGSAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLDMHHGMEVRLGLSKGPVCPSFI

Homology

[Close]

BLAST of Carg02184-RA vs. NCBI nr
Match: KAG6578507.1 (Cyclin-B1-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016072.1 Cyclin-B1-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.4 bits (742), Expect = 8.2e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSFI
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFI 141

[Close]

BLAST of Carg02184-RA vs. NCBI nr
Match: XP_022939098.1 (cyclin-B1-2-like [Cucurbita moschata] >XP_023550448.1 cyclin-B1-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.7 bits (735), Expect = 5.3e-74
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMDFERQILSRFQRP GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDFERQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSFI
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFI 141

[Close]

BLAST of Carg02184-RA vs. NCBI nr
Match: XP_022993234.1 (cyclin-B1-2-like [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMDFERQILSRFQRP GPI SSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDFERQILSRFQRPPGPISSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHG+EVRLGLSKGPVCPSFI
Sbjct: 121 MHHGIEVRLGLSKGPVCPSFI 141

[Close]

BLAST of Carg02184-RA vs. NCBI nr
Match: XP_038889455.1 (cyclin-B1-2-like [Benincasa hispida])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVES+YETTRRTEEEMKRKILVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYETTRRTEEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMD +RQILSRFQRP GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDLDRQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSF+
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFM 141

[Close]

BLAST of Carg02184-RA vs. NCBI nr
Match: XP_004141496.1 (cyclin-B1-2 [Cucumis sativus] >KGN52569.1 hypothetical protein Csa_009184 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVES+YETTRRT+EEMKRK+LVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYETTRRTQEEMKRKVLVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMD +RQILSRFQRP GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDLDRQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSF+
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFM 141

[Close]

BLAST of Carg02184-RA vs. ExPASy Swiss-Prot
Match: Q0DWQ7 (Cyclin-B1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCB1-2 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.9e-22
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGL-QGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTY 60
           M S   +  EIGG  +D +RFG+   VK DL   HP+++      +   + KR      Y
Sbjct: 1   MASGGVVKKEIGG-NHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGAEAIY 60

Query: 61  GSAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESE 115
           GSAF ++ D + QILS+FQRP G +PSSMLG EALTGSLDDFGFEDYLN    SE
Sbjct: 61  GSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNYAAASE 114

[Close]

BLAST of Carg02184-RA vs. ExPASy Swiss-Prot
Match: Q55G18 (Proteasome maturation protein homolog OS=Dictyostelium discoideum OX=44689 GN=pomp PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 23  LQGVKSDLVG-SHPVESIYETTRRTEEEMKRKILVNTYGSAFPLKMDFERQILSRFQRPL 82
           L+   S++ G SHPVESI     +TE ++K   + N +G+   +  + E+QI S+F+R L
Sbjct: 14  LRNESSNVKGLSHPVESIQLDQGKTEIKLKNFAMKNVFGTHMVMNNEIEKQIYSQFKR-L 73

Query: 83  GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLDMHHGMEVRLGLS 133
             + SSM+GLE + G  +DF F DYL DP  SE+  P  +H  ME RLG++
Sbjct: 74  PTLQSSMVGLETILGLDEDFDFGDYLCDPATSEAPLP-QLHTSMEHRLGMT 122

[Close]

BLAST of Carg02184-RA vs. ExPASy Swiss-Prot
Match: Q3SZV5 (Proteasome maturation protein OS=Bos taurus OX=9913 GN=POMP PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-12
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 16  NDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYGSAFPLKMDFERQILS 75
           +D LR G   VK++L+ SHP+E   +  +  +++M    L N  G   PLK+  E + + 
Sbjct: 28  HDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQ 87

Query: 76  RFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLDMHHGMEVRLGL 132
           + QR L  +PSS L L+ L G+ +  GFED LNDP +SE +   + H  +E +LGL
Sbjct: 88  QVQR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELMG--EPHLMVEYKLGL 140

[Close]

BLAST of Carg02184-RA vs. ExPASy Swiss-Prot
Match: Q9Y244 (Proteasome maturation protein OS=Homo sapiens OX=9606 GN=POMP PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-11
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 16  NDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYGSAFPLKMDFERQILS 75
           +D LR G   VK++L+ SHP+E   +  +  +++M    L N  G   PLK+  E + + 
Sbjct: 28  HDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQ 87

Query: 76  RFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLDMHHGMEVRLGL 132
           + QR L  + SS L L+ L G+ +  GFED LNDP +SE +   + H  +E +LGL
Sbjct: 88  QVQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMG--EPHLMVEYKLGL 140

[Close]

BLAST of Carg02184-RA vs. ExPASy Swiss-Prot
Match: Q9CQT5 (Proteasome maturation protein OS=Mus musculus OX=10090 GN=Pomp PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-11
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 16  NDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYGSAFPLKMDFERQILS 75
           +D LR G   VK++L+ SHP+E   +  +  +++M    L N  G   PLK+  E + + 
Sbjct: 28  HDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQ 87

Query: 76  RFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLDMHHGMEVRLGL 132
           +  R L  +PSS L L+ L G+ +  GFED LNDP +SE +   + H  +E +LGL
Sbjct: 88  QVHR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELMG--EPHVMVEHKLGL 140

[Close]

BLAST of Carg02184-RA vs. ExPASy TrEMBL
Match: A0A6J1FKQ4 (cyclin-B1-2-like OS=Cucurbita moschata OX=3662 GN=LOC111445100 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMDFERQILSRFQRP GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDFERQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSFI
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFI 141

[Close]

BLAST of Carg02184-RA vs. ExPASy TrEMBL
Match: A0A6J1JZM6 (cyclin-B1-2-like OS=Cucurbita maxima OX=3661 GN=LOC111489315 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.3e-73
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMDFERQILSRFQRP GPI SSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDFERQILSRFQRPPGPISSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHG+EVRLGLSKGPVCPSFI
Sbjct: 121 MHHGIEVRLGLSKGPVCPSFI 141

[Close]

BLAST of Carg02184-RA vs. ExPASy TrEMBL
Match: A0A0A0KUK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643970 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.1e-72
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVES+YETTRRT+EEMKRK+LVNTYG
Sbjct: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYETTRRTQEEMKRKVLVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMD +RQILSRFQRP GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDLDRQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSF+
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFM 141

[Close]

BLAST of Carg02184-RA vs. ExPASy TrEMBL
Match: A0A5D3BR37 (Cyclin-B1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001840 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.4e-72
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           M+SSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVES+YETTRRT+EEMKRKILVNTYG
Sbjct: 1   MDSSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYETTRRTQEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMD +RQILSRFQRP GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDLDRQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSF+
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFM 141

[Close]

BLAST of Carg02184-RA vs. ExPASy TrEMBL
Match: A0A1S3CAQ6 (cyclin-B1-2 OS=Cucumis melo OX=3656 GN=LOC103498587 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.4e-72
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           M+SSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVES+YETTRRT+EEMKRKILVNTYG
Sbjct: 1   MDSSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYETTRRTQEEMKRKILVNTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           SAFPLKMD +RQILSRFQRP GPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD
Sbjct: 61  SAFPLKMDLDRQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
           MHHGMEVRLGLSKGPVCPSF+
Sbjct: 121 MHHGMEVRLGLSKGPVCPSFM 141

[Close]

BLAST of Carg02184-RA vs. TAIR 10
Match: AT5G38650.1 (Proteasome maturation factor UMP1 )

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59
Identity = 102/141 (72.34%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MES K I HEIGG++NDALRFGL GVKSD++ SHP+E+ YE+ ++++EEMKR+++ +TYG
Sbjct: 1   MESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           +A PLKMD +RQILSRFQRP GPIPSSMLGLE  TG+LD+FGFEDYLNDPRESE+L+P+D
Sbjct: 61  AALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
            HHGMEVRLGLSKGP  PSF+
Sbjct: 121 FHHGMEVRLGLSKGPASPSFM 141

[Close]

BLAST of Carg02184-RA vs. TAIR 10
Match: AT5G38660.2 (acclimation of photosynthesis to environment )

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59
Identity = 102/141 (72.34%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MES K I HEIGG++NDALRFGL GVKSD++ SHP+E+ YE+ ++++EEMKR+++ +TYG
Sbjct: 291 MESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYG 350

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           +A PLKMD +RQILSRFQRP GPIPSSMLGLE  TG+LD+FGFEDYLNDPRESE+L+P+D
Sbjct: 351 AALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVD 410

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
            HHGMEVRLGLSKGP  PSF+
Sbjct: 411 FHHGMEVRLGLSKGPASPSFM 431

[Close]

BLAST of Carg02184-RA vs. TAIR 10
Match: AT1G67250.1 (Proteasome maturation factor UMP1 )

HSP 1 Score: 221.9 bits (564), Expect = 3.3e-58
Identity = 97/141 (68.79%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYETTRRTEEEMKRKILVNTYG 60
           MES K I HEIGG++NDALRFGL GVKS+++GSHP+ES YE+ ++++E +KR ++ + YG
Sbjct: 1   MESEKKIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYG 60

Query: 61  SAFPLKMDFERQILSRFQRPLGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLD 120
           +A PLKMD +RQILSRFQRP GPIPSSMLGLE  TG++DDFGFEDYLNDPR+SE+ +P+D
Sbjct: 61  TALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVD 120

Query: 121 MHHGMEVRLGLSKGPVCPSFI 142
            HHGMEVRLG+SKGP+ PSF+
Sbjct: 121 FHHGMEVRLGISKGPIYPSFM 141

[Close]

BLAST of Carg02184-RA vs. TAIR 10
Match: AT1G62920.1 (CONTAINS InterPro DOMAIN/s: Proteasome maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana protein match is: Proteasome maturation factor UMP1 (TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-09
Identity = 32/71 (45.07%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 62  AFPLKMDFERQILSRF------------------------QRPLGPIPSSMLGLEALTGS 109
           A PLKMD +R IL R+                         RP GPIPS ML LE  TG+
Sbjct: 4   ALPLKMDLDRPILPRYGMLDQYHYEIIPLNSDAYSAIRYENRPTGPIPSLMLDLEVYTGA 63

The following BLAST results are available for this feature:

BLAST of Carg02184-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578507.1	8.2e-75	100.00	Cyclin-B1-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016072.1 Cycli...	[more]
XP_022939098.1	5.3e-74	99.29	cyclin-B1-2-like [Cucurbita moschata] >XP_023550448.1 cyclin-B1-2-like [Cucurbit...	[more]
XP_022993234.1	1.3e-72	97.87	cyclin-B1-2-like [Cucurbita maxima]	[more]
XP_038889455.1	2.2e-72	96.45	cyclin-B1-2-like [Benincasa hispida]	[more]
XP_004141496.1	6.5e-72	95.04	cyclin-B1-2 [Cucumis sativus] >KGN52569.1 hypothetical protein Csa_009184 [Cucum...	[more]

BLAST of Carg02184-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0DWQ7	4.9e-22	50.43	Cyclin-B1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCB1-2 PE=3 SV=1	[more]
Q55G18	1.4e-13	41.44	Proteasome maturation protein homolog OS=Dictyostelium discoideum OX=44689 GN=po...	[more]
Q3SZV5	4.6e-12	37.93	Proteasome maturation protein OS=Bos taurus OX=9913 GN=POMP PE=2 SV=1	[more]
Q9Y244	3.0e-11	37.07	Proteasome maturation protein OS=Homo sapiens OX=9606 GN=POMP PE=1 SV=1	[more]
Q9CQT5	3.0e-11	37.07	Proteasome maturation protein OS=Mus musculus OX=10090 GN=Pomp PE=1 SV=1	[more]

BLAST of Carg02184-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKQ4	2.6e-74	99.29	cyclin-B1-2-like OS=Cucurbita moschata OX=3662 GN=LOC111445100 PE=4 SV=1	[more]
A0A6J1JZM6	6.3e-73	97.87	cyclin-B1-2-like OS=Cucurbita maxima OX=3661 GN=LOC111489315 PE=4 SV=1	[more]
A0A0A0KUK6	3.1e-72	95.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643970 PE=4 SV=1	[more]
A0A5D3BR37	5.4e-72	95.04	Cyclin-B1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001840 P...	[more]
A0A1S3CAQ6	5.4e-72	95.04	cyclin-B1-2 OS=Cucumis melo OX=3656 GN=LOC103498587 PE=4 SV=1	[more]

BLAST of Carg02184-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38650.1	1.4e-59	72.34	Proteasome maturation factor UMP1	[more]
AT5G38660.2	1.4e-59	72.34	acclimation of photosynthesis to environment	[more]
AT1G67250.1	3.3e-58	68.79	Proteasome maturation factor UMP1	[more]
AT1G62920.1	8.3e-09	45.07	CONTAINS InterPro DOMAIN/s: Proteasome maturation factor UMP1 (InterPro:IPR00801...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008012	Proteasome maturation factor Ump1	PFAM	PF05348	UMP1	coord: 15..129 e-value: 2.7E-32 score: 111.4
IPR008012	Proteasome maturation factor Ump1	PANTHER	PTHR12828	PROTEASOME MATURATION PROTEIN UMP1	coord: 1..141
None	No IPR available	PANTHER	PTHR12828:SF8	BNAA07G25120D PROTEIN	coord: 1..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02184	Carg02184	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02184-RA:1	Carg02184-RA:1	exon
Carg02184-RA:2	Carg02184-RA:2	exon
Carg02184-RA:3	Carg02184-RA:3	exon
Carg02184-RA:4	Carg02184-RA:4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02184-RA:cds	Carg02184-RA:cds	CDS
Carg02184-RA:cds	Carg02184-RA:cds_2	CDS
Carg02184-RA:cds	Carg02184-RA:cds_3	CDS
Carg02184-RA:cds	Carg02184-RA:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02184-RA	Carg02184-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex