Carg00957-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00957-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ras-related protein RABC2a-like
Location	Carg_Chr06: 1915656 .. 1917263 (-)
Sequence length	1032
RNA-Seq Expression	Carg00957-RA
Synteny	Carg00957-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGAAGAAGAAAGGTTTCTGTTTATTCCCTTTTCAAAAGATGTGGGAAGAAGAAAGCTTCCATAAAGCCTAGGAATCTCAATAGTTTCACTGTTTTTGATCTTGTTTAAGCCTTGGTTTCTTGCAGCTGGACAAGAGAGATTCAGAACATTGACAAGTTCCTACTATAGAGGTGCACAAGGGATCATTCTTGGTATGCTTCAAACTTTGATCTCTTTATCTTTTGAGCTAAGATTTATCTGGGTGTTCGGTGTTCGGTGTTCGATGTTCACTTAACTCGAGTCGAAACGGAGGACAATCAGTTGGGGGAAATAAGTTTGATTGGAAGTAGAATTGTGCTACAAACCTATAACAGCAGTTACAATTGGTTTTGTTCATCAACATTTTGTTTGATTCTTCTGTCAATCTGTCTGGTTTACAGTGTTGTATTTATGATCTTGTTGTAGTGTACGATGTAACACGGAGAGAAACGTTCGATAACTTATCGGACGTATGGGCTAAAGAAGTGGAACTATACTCAACAAATAAGGAGTGTGTCAAGATGCTAATTGGTAATAAGGTTGACAGAGTAAGTTTCTTTCTTCCTTCCTCTGGTGTTCTAAAAAAACAGTCCCAAATTAAGTGTTTACACCATCGTTCTCCTAAGATTTGTTGGCTAATGCTCCTTCGATGATCATTTAGGGAAAGCTTCTAAGATTTATGATAGAACTTGATGTGTGTGTTCATAGGAATCTGAAAGGGCTGTGAGCAGGGAGGAGGGGATTGCTCTAGCGAAGGAGCTTGGATCCTTTTTTCTTGAATGCAGTGCTAAAACCAGAGAGAATGTGGAGAAATGCTTTGAAGAGTTGGCATTGAAGGTATATTTCTACCAGACCAATTTGAAGTAGTAGCCCTCGAGAAACCGAACGCCTCGTTCGTTCGTTCTTAAAAACATTGTCTCTTGTGTTGCAGATAATGGAGGCTCCTAGTCTGATTGAAGAAGGATCCACTGTTGTAAAAAGAAACATTCTGAAGCAGCAAGAATTACAGCCTGCACCAACTGCAAGTTGCTGCCTCTAAAAACTCCAGTACGAAACGTCGATACGATAGCACGATTCTCCTTATCGACAGTTCCTGTACATGTCTCCTACTGCTCCTCCTTGTCATTGAGTTGTTTGTTTGCCTAAATGACTGTAATTAAGAGCTGAAAGAAACAAGAAAAAAAGAAAAAAAAACAAATATAGTAACCTCCTTTGTTCCTTCCAGTTTTTCTTCCTATCTTTATCTTTTGGATTGTTATGGCATTGTATTCTACCTATCTATACTAACAAAACTCGGCTTGTATCATATGGATCAAACACGTTGCTCGTACGATATCTCACGGCTGCTCTCTTCAAACAACTGCTTAAATTTCATGGTTTTCGAACTGGGAAGTTGCAGTTCTGGAACAACTCAATACAGATTTGGAAAAGATAACAAGAACCCACTTTGATTCAGGCTTTGTTTTTTGTTCTTAATAATTTTGAAAGAGAGCTTCCTCCACAATGATTTTCTGTCTTTTTGTATTATGTTCAAATGGGTTCCCAGCATAAATAGTGTTAGTGAAAGTGATTGAAATACAAAGAC

mRNA sequence

ATGTGGGAAGAAGAAAGGTTTCTGTTTATTCCCTTTTCAAAAGATCCTTGGTTTCTTGCAGCTGGACAAGAGAGATTCAGAACATTGACAAGTTCCTACTATAGAGGTGCACAAGGGATCATTCTTGTGTACGATGTAACACGGAGAGAAACGTTCGATAACTTATCGGACGTATGGGCTAAAGAAGTGGAACTATACTCAACAAATAAGGAGTGTGTCAAGATGCTAATTGGTAATAAGGTTGACAGAGAATCTGAAAGGGCTGTGAGCAGGGAGGAGGGGATTGCTCTAGCGAAGGAGCTTGGATCCTTTTTTCTTGAATGCAGTGCTAAAACCAGAGAGAATGTGGAGAAATGCTTTGAAGAGTTGGCATTGAAGATAATGGAGGCTCCTAGTCTGATTGAAGAAGGATCCACTGTTGTAAAAAGAAACATTCTGAAGCAGCAAGAATTACAGCCTGCACCAACTGCAAGTTGCTGCCTCTAAAAACTCCAGTACGAAACGTCGATACGATAGCACGATTCTCCTTATCGACAGTTCCTGTACATGTCTCCTACTGCTCCTCCTTGTCATTGAGTTGTTTGTTTGCCTAAATGACTGTAATTAAGAGCTGAAAGAAACAAGAAAAAAAGAAAAAAAAACAAATATAGTAACCTCCTTTGTTCCTTCCAGTTTTTCTTCCTATCTTTATCTTTTGGATTGTTATGGCATTGTATTCTACCTATCTATACTAACAAAACTCGGCTTGTATCATATGGATCAAACACGTTGCTCGTACGATATCTCACGGCTGCTCTCTTCAAACAACTGCTTAAATTTCATGGTTTTCGAACTGGGAAGTTGCAGTTCTGGAACAACTCAATACAGATTTGGAAAAGATAACAAGAACCCACTTTGATTCAGGCTTTGTTTTTTGTTCTTAATAATTTTGAAAGAGAGCTTCCTCCACAATGATTTTCTGTCTTTTTGTATTATGTTCAAATGGGTTCCCAGCATAAATAGTGTTAGTGAAAGTGATTGAAATACAAAGAC

Coding sequence (CDS)

ATGTGGGAAGAAGAAAGGTTTCTGTTTATTCCCTTTTCAAAAGATCCTTGGTTTCTTGCAGCTGGACAAGAGAGATTCAGAACATTGACAAGTTCCTACTATAGAGGTGCACAAGGGATCATTCTTGTGTACGATGTAACACGGAGAGAAACGTTCGATAACTTATCGGACGTATGGGCTAAAGAAGTGGAACTATACTCAACAAATAAGGAGTGTGTCAAGATGCTAATTGGTAATAAGGTTGACAGAGAATCTGAAAGGGCTGTGAGCAGGGAGGAGGGGATTGCTCTAGCGAAGGAGCTTGGATCCTTTTTTCTTGAATGCAGTGCTAAAACCAGAGAGAATGTGGAGAAATGCTTTGAAGAGTTGGCATTGAAGATAATGGAGGCTCCTAGTCTGATTGAAGAAGGATCCACTGTTGTAAAAAGAAACATTCTGAAGCAGCAAGAATTACAGCCTGCACCAACTGCAAGTTGCTGCCTCTAA

Protein sequence

MWEEERFLFIPFSKDPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNKVDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTVVKRNILKQQELQPAPTASCCL

Homology

[Close]

BLAST of Carg00957-RA vs. NCBI nr
Match: KAG7028043.1 (Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.9 bits (829), Expect = 7.6e-85
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MWEEERFLFIPFSKDPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWA 60
           MWEEERFLFIPFSKDPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWA
Sbjct: 1   MWEEERFLFIPFSKDPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWA 60

Query: 61  KEVELYSTNKECVKMLIGNKVDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCF 120
           KEVELYSTNKECVKMLIGNKVDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCF
Sbjct: 61  KEVELYSTNKECVKMLIGNKVDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCF 120

Query: 121 EELALKIMEAPSLIEEGSTVVKRNILKQQELQPAPTASCCL 162
           EELALKIMEAPSLIEEGSTVVKRNILKQQELQPAPTASCCL
Sbjct: 121 EELALKIMEAPSLIEEGSTVVKRNILKQQELQPAPTASCCL 161

[Close]

BLAST of Carg00957-RA vs. NCBI nr
Match: XP_023005146.1 (ras-related protein RABC2a-like [Cucurbita maxima] >XP_023541000.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 2.2e-71
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 129

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQELQPAPTASCCL
Sbjct: 190 VKRNILKQQELQPAPTASCCL 210

[Close]

BLAST of Carg00957-RA vs. NCBI nr
Match: XP_022936998.1 (ras-related protein RABC2a-like [Cucurbita moschata])

HSP 1 Score: 279.3 bits (713), Expect = 2.2e-71
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 129

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQELQPAPTASCCL
Sbjct: 190 VKRNILKQQELQPAPTASCCL 210

[Close]

BLAST of Carg00957-RA vs. NCBI nr
Match: KAG6596496.1 (Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.3 bits (713), Expect = 2.2e-71
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK
Sbjct: 100 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 159

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV
Sbjct: 160 VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 219

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQELQPAPTASCCL
Sbjct: 220 VKRNILKQQELQPAPTASCCL 240

[Close]

BLAST of Carg00957-RA vs. NCBI nr
Match: KAG7017389.1 (Ras-related protein RABC2a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 138/161 (85.71%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 1   MWEEERFLFIPFSKDPWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWA 60
           +W+ +  +   F   PWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETF+NLSDVWA
Sbjct: 66  IWDTDGLILNLFK--PWFLAAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWA 125

Query: 61  KEVELYSTNKECVKMLIGNKVDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCF 120
           KEVELYSTNK+CVKMLIGNKVDRESERAVSREEG ALAKELGS FLECSAKTRENVEKCF
Sbjct: 126 KEVELYSTNKDCVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCF 185

Query: 121 EELALKIMEAPSLIEEGSTVVKRNILKQQELQPAPTASCCL 162
           EELALKIMEAPSLIE+GSTVVKRNILKQQE Q A T  CCL
Sbjct: 186 EELALKIMEAPSLIEQGSTVVKRNILKQQEFQAASTTGCCL 224

[Close]

BLAST of Carg00957-RA vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.5e-59
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NL DVW KE+ELYSTN+ECV+ML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVRMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESER VSREEGIALAKEL   FLECSA+TR+NVE+CFEELALKIME PSL+EEGS+ 
Sbjct: 129 VDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSSA 188

Query: 141 VKRNILKQQ-ELQPAPTASCC 161
           VKRNILKQ+ E Q    + CC
Sbjct: 189 VKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Carg00957-RA vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-53
Identity = 102/142 (71.83%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGII+VYDVTRR+TF NLSD+WAKE++LYSTN++C+KML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VD+ESERAVS++EGI  A+E G  FLECSAKTR NVE+CFEEL LKI+E PSL  EGS+ 
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 141 VKRNILKQQELQPAPTAS--CC 161
            K+NI KQ   Q   T+S  CC
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYCC 210

[Close]

BLAST of Carg00957-RA vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.4e-51
Identity = 97/123 (78.86%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN +C+KML+GNK
Sbjct: 69  AGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIKMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESER VSREEG+ALAK+L   F ECSA+TRENV  CFEELALKIME PSL+EEGS+ 
Sbjct: 129 VDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSSS 188

Query: 141 VKR 144
           VKR
Sbjct: 189 VKR 191

[Close]

BLAST of Carg00957-RA vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.3e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGII VYDVTRR+TF++L   W +E ++YST +  +KM++ NK
Sbjct: 66  AGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANK 125

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIE 136
           VD  ++R VS EEG   A+  G  F+E SA+    V + FEEL LKI++ P L+E
Sbjct: 126 VDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLE 180

[Close]

BLAST of Carg00957-RA vs. ExPASy Swiss-Prot
Match: Q6DHC1 (Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLT SYYRGAQG+ILVYDVT+R+TF  L + W  E+E Y T  + VKML+GNK
Sbjct: 65  AGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNK 124

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           +D+++ R V R EG+  A++    F+E SAKTR+ V+  FEEL  KI++ P L E     
Sbjct: 125 IDKDN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESS--- 184

Query: 141 VKRNILKQQELQPAPTASC 160
           ++ + ++  + +P    +C
Sbjct: 185 IQNHGVQLSDNEPQRQGAC 198

[Close]

BLAST of Carg00957-RA vs. ExPASy TrEMBL
Match: A0A6J1KU45 (ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111498270 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 129

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQELQPAPTASCCL
Sbjct: 190 VKRNILKQQELQPAPTASCCL 210

[Close]

BLAST of Carg00957-RA vs. ExPASy TrEMBL
Match: A0A6J1FET8 (ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111443418 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 129

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQELQPAPTASCCL
Sbjct: 190 VKRNILKQQELQPAPTASCCL 210

[Close]

BLAST of Carg00957-RA vs. ExPASy TrEMBL
Match: A0A0A0LGE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G743430 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.5e-67
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNK+CVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAK LGS+FLECSAKTRENVEKCFE+LALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAPSLIEEGSTV 189

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQE QPA T SCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Carg00957-RA vs. ExPASy TrEMBL
Match: A0A5A7TKX7 (Ras-related protein RABC2a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002940 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.9e-67
Identity = 134/141 (95.04%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNK+CVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAK LGS FLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSCFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQE QPA T SCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Carg00957-RA vs. ExPASy TrEMBL
Match: A0A1S3B6E7 (ras-related protein RABC2a OS=Cucumis melo OX=3656 GN=LOC103486521 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.9e-67
Identity = 134/141 (95.04%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNK+CVKMLIGNK
Sbjct: 70  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKDCVKMLIGNK 129

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESERAVSREEGIALAK LGS FLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV
Sbjct: 130 VDRESERAVSREEGIALAKVLGSCFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 189

Query: 141 VKRNILKQQELQPAPTASCCL 162
           VKRNILKQQE QPA T SCCL
Sbjct: 190 VKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of Carg00957-RA vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A )

HSP 1 Score: 228.0 bits (580), Expect = 5.3e-60
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGIILVYDVTRRETF NL DVW KE+ELYSTN+ECV+ML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVRMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESER VSREEGIALAKEL   FLECSA+TR+NVE+CFEELALKIME PSL+EEGS+ 
Sbjct: 129 VDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSSA 188

Query: 141 VKRNILKQQ-ELQPAPTASCC 161
           VKRNILKQ+ E Q    + CC
Sbjct: 189 VKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Carg00957-RA vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 102/142 (71.83%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGII+VYDVTRR+TF NLSD+WAKE++LYSTN++C+KML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VD+ESERAVS++EGI  A+E G  FLECSAKTR NVE+CFEEL LKI+E PSL  EGS+ 
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 141 VKRNILKQQELQPAPTAS--CC 161
            K+NI KQ   Q   T+S  CC
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYCC 210

[Close]

BLAST of Carg00957-RA vs. TAIR 10
Match: AT1G43890.2 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 102/142 (71.83%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGII+VYDVTRR+TF NLSD+WAKE++LYSTN++C+KML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VD+ESERAVS++EGI  A+E G  FLECSAKTR NVE+CFEEL LKI+E PSL  EGS+ 
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 141 VKRNILKQQELQPAPTAS--CC 161
            K+NI KQ   Q   T+S  CC
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYCC 210

[Close]

BLAST of Carg00957-RA vs. TAIR 10
Match: AT1G43890.3 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 102/142 (71.83%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQERFRTLTSSYYRGAQGII+VYDVTRR+TF NLSD+WAKE++LYSTN++C+KML+GNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VD+ESERAVS++EGI  A+E G  FLECSAKTR NVE+CFEEL LKI+E PSL  EGS+ 
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 141 VKRNILKQQELQPAPTAS--CC 161
            K+NI KQ   Q   T+S  CC
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYCC 210

[Close]

BLAST of Carg00957-RA vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B )

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-52
Identity = 97/123 (78.86%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 21  AGQERFRTLTSSYYRGAQGIILVYDVTRRETFDNLSDVWAKEVELYSTNKECVKMLIGNK 80
           AGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN +C+KML+GNK
Sbjct: 69  AGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIKMLVGNK 128

Query: 81  VDRESERAVSREEGIALAKELGSFFLECSAKTRENVEKCFEELALKIMEAPSLIEEGSTV 140
           VDRESER VSREEG+ALAK+L   F ECSA+TRENV  CFEELALKIME PSL+EEGS+ 
Sbjct: 129 VDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSSS 188

Query: 141 VKR 144
           VKR
Sbjct: 189 VKR 191

The following BLAST results are available for this feature:

BLAST of Carg00957-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028043.1	7.6e-85	100.00	Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023005146.1	2.2e-71	100.00	ras-related protein RABC2a-like [Cucurbita maxima] >XP_023541000.1 ras-related p...	[more]
XP_022936998.1	2.2e-71	100.00	ras-related protein RABC2a-like [Cucurbita moschata]	[more]
KAG6596496.1	2.2e-71	100.00	Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7017389.1	1.5e-69	85.71	Ras-related protein RABC2a [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg00957-RA vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49841	7.5e-59	80.85	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
O23657	1.6e-53	71.83	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
Q9SF92	4.4e-51	78.86	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
P36862	4.3e-30	56.52	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]
Q6DHC1	1.2e-29	48.20	Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1	[more]

BLAST of Carg00957-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KU45	1.0e-71	100.00	ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111498270 PE=4...	[more]
A0A6J1FET8	1.0e-71	100.00	ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111443418 PE...	[more]
A0A0A0LGE4	3.5e-67	94.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G743430 PE=4 SV=1	[more]
A0A5A7TKX7	5.9e-67	95.04	Ras-related protein RABC2a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B6E7	5.9e-67	95.04	ras-related protein RABC2a OS=Cucumis melo OX=3656 GN=LOC103486521 PE=4 SV=1	[more]

BLAST of Carg00957-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03530.1	5.3e-60	80.85	RAB GTPase homolog C2A	[more]
AT1G43890.1	1.1e-54	71.83	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.2	1.1e-54	71.83	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.3	1.1e-54	71.83	RAB GTPASE HOMOLOG B18	[more]
AT3G09910.1	3.1e-52	78.86	RAB GTPase homolog C2B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 70..83 score: 38.92 coord: 105..127 score: 43.7
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 6..130 e-value: 3.2E-38 score: 143.0
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 4..130 e-value: 6.8E-9 score: 12.7
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 20..160
None	No IPR available	PANTHER	PTHR24073:SF1138	SMALL MONOMERIC GTPASE-RELATED	coord: 20..160
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..161 score: 22.318119
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 8..131 e-value: 1.0E-6 score: -32.1
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 21..128 e-value: 3.1E-33 score: 114.7
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..161 score: 14.652423
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 20..156 e-value: 3.2E-39 score: 136.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 21..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg00957	Carg00957	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00957-RA:5	Carg00957-RA:5	exon
Carg00957-RA:4	Carg00957-RA:4	exon
Carg00957-RA:3	Carg00957-RA:3	exon
Carg00957-RA:2	Carg00957-RA:2	exon
Carg00957-RA:1	Carg00957-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00957-RA:three_prime_utr	Carg00957-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg00957-RA:cds	Carg00957-RA:cds_5	CDS
Carg00957-RA:cds	Carg00957-RA:cds_4	CDS
Carg00957-RA:cds	Carg00957-RA:cds_3	CDS
Carg00957-RA:cds	Carg00957-RA:cds_2	CDS
Carg00957-RA:cds	Carg00957-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg00957-RA	Carg00957-RA-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding