Carg00582-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg00582-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 5700739 .. 5701338 (-)
Sequence length198
RNA-Seq ExpressionCarg00582-RA
SyntenyCarg00582-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCTGCCGTGTGCCTTCCTCCATTCTGGATCTGGATAGTAACTATAATACACTCCATTGTTTCAGACAAAGACCTAATACAGGTTTTCTTCCCACATCGTGACACGTGGTACGCGAAGTCAATCACAGCTATCCGCAACACCATGGTGACTTTTCCTACTCACTTCCACAATCCTCACATCCACAGCATCTTATTGTATCTATTCAATGGAAAGTTACACTCATACTAGCCTGAATGCCATTAATCTTTCTAAGATAGTTATGAGATTACTTGTCTTAGGATTATACTTAATAAGTGTATTGGTTTTTTTTAGGATTCAATGGGTTTTTATTGGCGTTTATTATTGAAAGTTTAGCTATTTTATTAAATATAGGCGAGTGTTTATGGTAGTGTGGGTGATTGAGAGTTGTGCTGTTTTTTCTTCGATATCTCGTATTTGGTTAGTGTTTTTCTGGTTGTGGTAAAAGTAAAGGAGATAGTGGATGGGTTAGTGCGGTTTCATAATGTTGTGCGCTTGTAATTTTTTAAATGTTATATTATTCTGTAGGTTTATGTGAGGTTATATTATGTGGACGAGCAATTAAGAGGAGCGAGA

mRNA sequence

ATGGTATCTGCCGTGTGCCTTCCTCCATTCTGGATCTGGATAGTAACTATAATACACTCCATTGTTTCAGACAAAGACCTAATACAGGTTTTCTTCCCACATCGTGACACGTGGTACGCGAAGTCAATCACAGCTATCCGCAACACCATGGTTTATGTGAGGTTATATTATGTGGACGAGCAATTAAGAGGAGCGAGA

Coding sequence (CDS)

ATGGTATCTGCCGTGTGCCTTCCTCCATTCTGGATCTGGATAGTAACTATAATACACTCCATTGTTTCAGACAAAGACCTAATACAGGTTTTCTTCCCACATCGTGACACGTGGTACGCGAAGTCAATCACAGCTATCCGCAACACCATGGTTTATGTGAGGTTATATTATGTGGACGAGCAATTAAGAGGAGCGAGA

Protein sequence

MVSAVCLPPFWIWIVTIIHSIVSDKDLIQVFFPHRDTWYAKSITAIRNTMVYVRLYYVDEQLRGAR
Homology
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BLAST of Carg00582-RA vs. NCBI nr
Match: KAG7034083.1 (hypothetical protein SDJN02_03810, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MVSAVCLPPFWIWIVTIIHSIVSDKDLIQVFFPHRDTWYAKSITAIRNTMVYVRLYYVDE 60
          MVSAVCLPPFWIWIVTIIHSIVSDKDLIQVFFPHRDTWYAKSITAIRNTMVYVRLYYVDE
Sbjct: 1  MVSAVCLPPFWIWIVTIIHSIVSDKDLIQVFFPHRDTWYAKSITAIRNTMVYVRLYYVDE 60

Query: 61 QLRGAR 67
          QLRGAR
Sbjct: 61 QLRGAR 66

The following BLAST results are available for this feature:
BLAST of Carg00582-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034083.11.1e-29100.00hypothetical protein SDJN02_03810, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg00582-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00582-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg00582-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg00582Carg00582gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg00582-RA:2Carg00582-RA:2exon
Carg00582-RA:1Carg00582-RA:1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg00582-RA:cdsCarg00582-RA:cds_2CDS
Carg00582-RA:cdsCarg00582-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg00582-RACarg00582-RA-proteinpolypeptide