CaUC10G199930.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G199930.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr10: 35219837 .. 35222514 (-)
Sequence length460
RNA-Seq ExpressionCaUC10G199930.1
SyntenyCaUC10G199930.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTGTTCCTACCTCATTAGGCAGTCCGTGGGCTGAAATGGGGGATTTTAAAGGTTAATTTTTTGGGTTGTTGCGGCCCAAAATATTGGTAGATATAGCATAATTTAAAAAAAATTGCAATCACCCTAATTATTATTAGGTTAAAATAACATTTTGATCCGTGTACTTTGAAATTTGTTCAAAATTTGTTGAATTTTAGTCTCTGTACTTTCAAATGTTTAATTTTAATCTCTGTACTTTTAATAAATTTTAAATTTAGTTCCTCGAAGTTAGTTTTTATTGAAATTGATTAAATAATCATAATAATTTTCATATAAAGGAAAATAATATTGTGAATATTTTTTCAAAATTTATAGTGAAAACACTAGTAAAAAGACAAAAAGTAATGAGAAAATCCACAATAAACAAGTAGTATGGATTAAATTTAAAAGTAATGAGAAAATCCAGTATGGATTAAATTTAAGATTTATTGAAAGTACGAGGACTAAAATTGGACATTTAAAAGTATAAAGACTAAAATTGAACAAACTCCAAAATATAGAGACTAAAATGATATTTTAATTTGATTATTATTATTATTATTATTTACAAGCAGATGGATTCCCTTCAGGAATAGTGTCGTAAGCATAAACCCATGAAGATGTATTTCTTTTTGGTGTGAAAGTTGGTTTTAGAATAGTCCTTAATTTTAGAATAATTTTTTTGTTCACATAAGAATGACAAAAGACACAAATCATGGATAGCAAGAATAGTTGCATAGTAACTTTTGAACGACACGGAATCCTTTTTATAAACACAACTGTATAAAAGAATTACTGAAATTTGTTCCACATGGAAAGCACTGAAACCGTATCTTATGTTGATTCAACATAGCTTTTAATTGCTTGGTGAGAAAAGAAAAAAGAACTGAAAAAGCTTTTCAGTTGACACCAATATGATGAGAAGAAGCTCTCTCTCTCTCTCTTGAAGGCAACTCCAAGTTGAATCTCACTCACCATCTACTTTTTAGGATCTTCCCAGTTCCACTAATGGAAGTTAGAACCTGTTGTGAAATTAAAATATATATTTGAACGAACCTTGCATAAACATAACATATTGAGGATTTCTCTATTTAATATTCCAAGGCACTACGCAGTTGGCCACACAAGGATGGTGGGATATCTTTATTTCTAGTGGCTGAATACAAGTCATTACATGAAAAAAAAAAAAAAATGTCAGCAAAAGAGAACTAAAAACTTGTCAAACTACATTATCTTCGAAGAGAAAGATCTTCACAAGGATTTGATAATGATAATACTCATACAGTTGCCTTGCTTATCTTCACACTTTTGAATTTGCTCAAAATTCATTTGACTTTTTGTGCTCAAACTTTTGTCGAGCTAGCATCTGATCTGATGTCGATACAACTTAATGTTAATATTAGGCTGTTAATTAATCACAAATAATAGTTACTTTTATTTATATTTTTACCTTAACAATTGCAGCTGACCTCTCTTCTGCTTGCTTTCATCCTTTTTTACTTTGATATAGCGAACTTTGGCTTCATTGTTGGGACAACTGTTCCAGTGCAAATCCCTTTGTGGATATCAAGTGGATTAATTTCACATCGATTGTGATTGATTGATGGAAGATTTGATTAGAATTAAGTGGGTTTATTTCCCTTGTTGCAACTATTTCACAAAAAGAAAACTTATTGTGAATGATTGTTTGAATTTGAAGGTTGGTTATAATTAACTGAATCTTGTAGGAAGAAGGGCTTTGTGAAATTGTATCAAACTAGTTGTGGTTCTTGAGTTGTAATAGCCACCATACGGAACTACTCGCTGCTTTTTTTTTTTTTTTTTTAATTCCCTCTTGGAAAGAGTGCATTCCTTGGAAAGAAAATTCTAGTATAACTATTCTTTCAAATCTTGGTAGACTCCACATCATCTTTGAAAGAATGTTGATGTGGCAAATAAAAAATGGAGCACTTTAATTTTTTTTTTTTTTTTAATTCCCTCTTGGAAAGAGTGCATTCCTTGGAAAGAAAATTCTAGTATAACTATTCTTTCAAATCTTGGTAGACTCCACATCATCTTTGAAAGAATGTTGAGGTGGCAAATAAAAAATGGAGCACTTTAATTTTTTTTTTTTTTTTAATTCCCTCTTGGAAAGAGTGCATTCCTTGGAAAGAAAATTCTAGTATAACTATTCTTTCAAATCTTGGTAGACTCCACATCATCTTTGAAAGAATGTTGATGTGGCAAATAAAAAATGGAGCACTTTAATTTTTTTTTTTTTTTTTTTTTTTCTCCCTTCATAGTTCTTGAATTCATGAATTGTTTTAACTCTCGAATGTCTCTATTTTGTTTCTTTGCTTAGTTTCTCCCTGGAAGAAGGAGGATATTGTGAGACTAACTACAGTGAAAGGAGGTCACATGTTACACGAGAGGCACCCGATGTGGAATAAGTTCAAAGAAGAGACTCTGAAAGTAATTGAAGCTTTCCTATGTCTTAAGTCAATTAGAAACTATTTTGGGTTAGAAAATCATATCACGTCAAGAACTTGACCTTCTCTTTTTCCATGCGTGTTTATAATTTTCAACTGTTGCATCGAAATTGAAATTGGATACAGTCGATTTCTGTATCCTGTTCCTGTACTATAATTACTATTTATATAAATCACTTTCATAAAA

mRNA sequence

ATGGCCTGTTCCTACCTCATTAGGCATCTCTGTACTTTCAAATGTTTAATTTTAATCTCTGTACTTTTAATAAATTTTAAATTTAGTTCCTCGAATTGGCCACACAAGGATGGTGGGATATCTTTATTTCTAGTGGCTGAATACAATTTCTCCCTGGAAGAAGGAGGATATTGTGAGACTAACTACAGTGAAAGGAGGTCACATGTTACACGAGAGGCACCCGATGTGGAATAAGTTCAAAGAAGAGACTCTGAAAGTAATTGAAGCTTTCCTATGTCTTAAGTCAATTAGAAACTATTTTGGGTTAGAAAATCATATCACGTCAAGAACTTGACCTTCTCTTTTTCCATGCGTGTTTATAATTTTCAACTGTTGCATCGAAATTGAAATTGGATACAGTCGATTTCTGTATCCTGTTCCTGTACTATAATTACTATTTATATAAATCACTTTCATAAAA

Coding sequence (CDS)

ATGGCCTGTTCCTACCTCATTAGGCATCTCTGTACTTTCAAATGTTTAATTTTAATCTCTGTACTTTTAATAAATTTTAAATTTAGTTCCTCGAATTGGCCACACAAGGATGGTGGGATATCTTTATTTCTAGTGGCTGAATACAATTTCTCCCTGGAAGAAGGAGGATATTGTGAGACTAACTACAGTGAAAGGAGGTCACATGTTACACGAGAGGCACCCGATGTGGAATAA

Protein sequence

MACSYLIRHLCTFKCLILISVLLINFKFSSSNWPHKDGGISLFLVAEYNFSLEEGGYCETNYSERRSHVTREAPDVE
Homology
The following BLAST results are available for this feature:
BLAST of CaUC10G199930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC10G199930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC10G199930.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC10G199930.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC10G199930CaUC10G199930gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC10G199930.1-exonCaUC10G199930.1-exon-Ciama_Chr10:35219837..35220150exon
CaUC10G199930.1-exonCaUC10G199930.1-exon-Ciama_Chr10:35221326..35221376exon
CaUC10G199930.1-exonCaUC10G199930.1-exon-Ciama_Chr10:35222244..35222312exon
CaUC10G199930.1-exonCaUC10G199930.1-exon-Ciama_Chr10:35222489..35222514exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC10G199930.1-three_prime_utrCaUC10G199930.1-three_prime_utr-Ciama_Chr10:35219837..35220062three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC10G199930.1-cdsCaUC10G199930.1-cds-Ciama_Chr10:35220063..35220150CDS
CaUC10G199930.1-cdsCaUC10G199930.1-cds-Ciama_Chr10:35221326..35221376CDS
CaUC10G199930.1-cdsCaUC10G199930.1-cds-Ciama_Chr10:35222244..35222312CDS
CaUC10G199930.1-cdsCaUC10G199930.1-cds-Ciama_Chr10:35222489..35222514CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC10G199930.1CaUC10G199930.1-proteinpolypeptide