CaUC06G112310.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G112310.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 6858849 .. 6859846 (-)
Sequence length502
RNA-Seq ExpressionCaUC06G112310.1
SyntenyCaUC06G112310.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCGGAATTCAATGCATCCCGATTCCTTGCACACTACTTACTACCGAGTAGTGAACAAACATATCCGTCAACTTTCATCTCAGCTTTTGTGGCCACTCTTTACATCGAGCTCACATTAAGCTATGTTAAACCTGAACCCAAATCATATCCGTATGAAGTTAAATTGAACTTCAAGTTCTTGGTTTCAGAAAGCAGATAACAGGATTTCTTTTGTTCTTATCCAAGTCAACCATTCAAAATTTCAAACTTGTTTGTTAGTTGTTAAGATTTTAGAAGCCACTTCCTTAAAAATTGTCAGTACCTGATGATATATACTTATAGGGATGATTTTGGCAGACTTGAAACCTATTAAGAACAGAACCAAAATTTTCAGTCCTTGAAAGTAATATTCACTCCTTTGAAAGGTTTTGGATTTCTATTTCTGATGAACTGGGAAAGCTGTATAGCACATCTTACATTTACTATGAAGGCCATCTTCATATTGCATACACTGTTTCGATCTTTACAATTGCAATTCGCAGTAGACTTCATCAGGATAGGCAAACATGTTCTCACTGATGAACAATCTCATTCACATCAATGACCTTGTGACTTACTTTAATTTGAGATCATATTTGTAATCTTCAATGCTGCCATTTTTTTGCAGGGCTCTGGCTACACTGGGTCTTAATGGGGGAGGAGACCATCGCTGATCATAGATGGCGACTTCGTTATCGAGCAGACCTTCCAGCTATCTTACTTTCTCTTCCCATCATTTTACTTAATTTTAGATGCTCGTTCTGAAACATATGGATGACCAGAGCTTTCTTCTATAAGAATATACTATAACACAGTGATATTCATTGTCAGAAACAGGCTTCCCCTATCCCTACCTACATTATCCTGGGAGATTCTTCCTCCCCCATGGAAATGGAAATACATACCAAACTTACTGCAAATAAAATGATAGACAATTATAAATTATGTCTCCTGGTTCATCTTGTAGGTTTGATA

mRNA sequence

ATGGATTCGGAATTCAATGCATCCCGATTCCTTGCACACTACTTACTACCGAGTAGTGAACAAACATATCCGTCAACTTTCATCTCAGCTTTTGTGGCCACTCTTTACATCGAGCTCACATTAAGCTATGTTAAACCTGAACCCAAATCATATCCGGCTCTGGCTACACTGGGTCTTAATGGGGGAGGAGACCATCGCTGATCATAGATGGCGACTTCGTTATCGAGCAGACCTTCCAGCTATCTTACTTTCTCTTCCCATCATTTTACTTAATTTTAGATGCTCGTTCTGAAACATATGGATGACCAGAGCTTTCTTCTATAAGAATATACTATAACACAGTGATATTCATTGTCAGAAACAGGCTTCCCCTATCCCTACCTACATTATCCTGGGAGATTCTTCCTCCCCCATGGAAATGGAAATACATACCAAACTTACTGCAAATAAAATGATAGACAATTATAAATTATGTCTCCTGGTTCATCTTGTAGGTTTGATA

Coding sequence (CDS)

ATGGATTCGGAATTCAATGCATCCCGATTCCTTGCACACTACTTACTACCGAGTAGTGAACAAACATATCCGTCAACTTTCATCTCAGCTTTTGTGGCCACTCTTTACATCGAGCTCACATTAAGCTATGTTAAACCTGAACCCAAATCATATCCGGCTCTGGCTACACTGGGTCTTAATGGGGGAGGAGACCATCGCTGA

Protein sequence

MDSEFNASRFLAHYLLPSSEQTYPSTFISAFVATLYIELTLSYVKPEPKSYPALATLGLNGGGDHR
Homology
The following BLAST results are available for this feature:
BLAST of CaUC06G112310.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G112310.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G112310.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G112310.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC06G112310CaUC06G112310gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G112310.1-exonCaUC06G112310.1-exon-Ciama_Chr06:6858849..6859195exon
CaUC06G112310.1-exonCaUC06G112310.1-exon-Ciama_Chr06:6859692..6859846exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G112310.1-three_prime_utrCaUC06G112310.1-three_prime_utr-Ciama_Chr06:6858849..6859149three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G112310.1-cdsCaUC06G112310.1-cds-Ciama_Chr06:6859150..6859195CDS
CaUC06G112310.1-cdsCaUC06G112310.1-cds-Ciama_Chr06:6859692..6859846CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC06G112310.1CaUC06G112310.1-proteinpolypeptide