CaUC06G111770.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G111770.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 6265422 .. 6273111 (+)
Sequence length738
RNA-Seq ExpressionCaUC06G111770.1
SyntenyCaUC06G111770.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTGTAAGAAAAATTCGGTGTAAAATAAGGCACCTTTGAGTTGTTTATTCAAAATCACAAGTAGAGGTGTGCAATCGTCAATCCAAACCGGTTTTTCAATCAACCTGCTATCGAACCGACTATGGTTGGTTTAGTAAATGTTCAAACCAACCTCAACCATTGAGTGCAAACCAACCTTAGATCAGTCGATTTGATTCTTTATGTTTTTTTTTTTAAAAAAAATATCGGTTTAGATTTTTCCCAAACCAATGCTGACCGAGTCCCTCCTATTCTCCGACCGACCGCCTTCAATACAATTGATTTTGATCTGTCAGCTCAATTTTTGGGTCTATCATGCTCACCCCCAATCACAAGTTTATCAACACCCATAACATAAAGTCAATTGGTCTAAAAACAAACTCCAACCCAAATTTCAACCTTTGGAGAGAAAAAAAACAAAGAAACAAACAAAAGAACAAAGTGCTTCAGAATAACTTGTGTATATTACTGTGATTACTGGATAAATACTTCATTATGGTTGCCAAATGAATAGAAAGTTGTTATTTGAACACTTGAAAATGTGGTTGGCCTAAAAGGCTGCAACCTTTTTTTTTTCACTAGAGCTCCAATTTTAGGAGCTAAGATATGAAGCCTTTACATGACCCTAAGGAGGGTGGAAAAAAGGAAAAAGAAAAAAAAGAAAATTCCTCAGCTCAAAAATAATTAAAACTTACATCTTGAATTTCCTAATTGATCTCGCTTTGTACAGAAGTATTGGTAAGTAACGAACTGTGTAACATCCTAAATGTTCCTAACCAATATCATCAGGTTGAAGTCAGTTTCAGTGAGGAGTCCCTTGGCTTTCTCAACTGATCACCTCAAGGAAGAATAATCCAGGAAAAGAAAAAAAAAAAAAAACTATTTACATGTTTGACCTAATCTCTACCACTGCAAAAACCCGAGTGAGTTATCGTCTGCGTAGCAACTCGAACCAACTGTACGAGTTCCCCTACATCTTGGAAGCTGAAATCAATCACTTTTTTAACTGATGCAACATAGTCCACATGCTTTCCTTCACTAGCACATGAACTAGCTGCCACAAATGCGTTTCGTGAATTCTTCGAGGCCTCCATGGCTGAATTCATATCACGCACCTGGAACATTAAAACATTCAACATGTTCACATTCAAGACTTATATTTGTAAAAAGAAATAGCCATTGAGAACAGCAGTATAAACTTCTGGTGAATCTGATCTAACAAAATTATTTGAGTTGTAGTAGAAATGGGAACTTACGAAATTGAGGACCCGACCAAAACTCGTGCAGGTTCCAGCATTCCAGATGTGATTTCGAGCACCATGGGAACTACCTTTGTCGAAAGTAGCCTTATCCATAGCTCCATGATTGCTTAAGTTATCGACATCTGATGCAGAAGAAGATGGAGACTCGCCTAAAGAAAGGATTCATTGAAAGAGCATCACAATATTAATTAATTGGCGAGTGAACAGTTGCAATAAAACAATCAATCCATTTGTCTCCTATAAATATCATAATATCTTTTTCCCATTACCTTGCACAATTGTCCGAAACAACGATTGCATCTCAAGGCGATCCCCACTGATGCTTGAATGTTTATGGTAAACTATCCTCAAGTAAGCTACTTCGATACATTTATAAGCCAAAGATGCTGCAGCCATTTCTCGGCGACTTTCATATTCCATGGCACAGGACCTGTGAATGATTGGAGATTGCGGGTTAAAATAAGATTTTAGTCATCAACATGAAACACACTTGAACACATCTATGTCCATAAAACAAAAGATAAAAAAGAAACTCATCGCAAAGATTTCAATGTTGAACTGGGGAATGACGAACACTATCCTAGATATTCTAAAATATATGTTCAAACCAAAAAGTACGGGAATTTCATCAGAGGGAGTCTAAAAAGTTTTGATGAAGTATTGGCATGGTTTATTTTAAGGTGCCACAGTCAAAGGTCGAGCTGAAGTAGGTGGCGGTTGCAGGATTTAATTTCAGCTACAAAATAACGTTTCATTTACAACAGTTGGCATGGGTCAGATTGACTTATCAGTTAGCATCATTTAAAATGGTTGCAAGAACAAAGACACCATAAAGCAAACATGAGCTAGCCAATTGGAAAGGCAAAGTTAAAAATGAAAGGCCTCGTGATTAAAGACCAACCCTTGGAAAAGTAAAGTTTCAAACATAAAAGAAACGTGAGCTACTAATTACTTGCATTAAAAGGCTTTAAATAGACCCAAAAAAAAAGTGCCTAGATGATTGTTTTTACTTACTCGCACAATTCAGCTGTCATGCTATAGAATCGTATGGGGGAGGTATCACCAGGCTTGCCACTCGTATTATTAAGAGTCTCTAGAAGGAATGCTCCATGTAGATACTTCAGAGCAGATTGGAAGTAAAGCTCATTACTTTCAAAAATGAATCCAGAATTCTACAGAATATATAAGAAAACAATGTAAGAATTGGAAACAGGTCCCATCTTAGCAAACAATGTTCAAAGAAAGTTGCAGCAATGAGGGAACCTTCAAGTGGTCTGCTTCATCTCTGAGTTTCTTGGCTTCTTTCAATGTATCACAAGCAGTCTGATTTGAGGACTTCGTTCTGTTGAGATTTGAAGCATTAACATCTCTAGATCCCTGTAGATCAGGTGTTCTCTTTGACTCTACCACATCATCACTGGGGGCATCGGCAAAAAGCTGATGAGAATCTCCCGCCCTAATAGACACTCGTAAAGGATCACCACCAGGGCGGGATGGTTCTTCTTTGCGTTCACCTCCAGAAGAGCATTTTGATATTCCGTCCCTCTTTTCTACTGTTCTCAGACCACCTTTATCTCCTGCTTCAAAATCCCAATTTCGCTTTGTCTGAAGTCTGACTGCTTTATTTGATTGAAATAAAGCACCTGATCTCTGGTCTTCAGCATCATGACCCTTGAGATTTTGAGGGGTTTCCAATCCTTCAGCACCGACATGAATCTTCTCTTTCTTGCGTTTCTTGTGGCTGGGCTCCATGTTGTCATTATTGCACAACCTAGACTGCTTAACAGTATGTGCATCAGCAGTAACAAAATGGTGTTGAACTGCAGGTGAAGCTTTGATTTTCTTGCTGTTGGTGTTGAGAGCATGAGAGTCAGAGAGAATATTAGAGGTAATCTCCTCTTTTTCTCCTCCAAATTGGTCGAGGCCGGATGACCTCATAGGAGATGATGAAACTGATTCAGCAGGAGATACTTTCACTCCAAATTTGGCTTTTGGTAAATGAGATTGAGAAACATTTGAAGAGCTAGAGTTAGCTGCCACTGAAACTTGTTGAGCAATTAAATTTCTCTTCGGTAACTCCTTACTAACTGATGTTTGTTTAGCAATAATCTTCTTATTTTGCATTTTTGGTTCCCTATCCTTGTTGATTTCTTCCATGCCATCAATGAAATCATTGGACACATCAAGCTTCTTCTTCTTCTTCAACCTTTCACAATTCTCTTCCTTCATAAGCACGGGTTCATGGAGTCCACTGTTAGGAGAATTTTGATCATCTTGCCAATCATTCACTTTCCTTTTCTTTGTGCAGGCACTTCTACCACTTAGTTGATTAACAGAGGACCTAACAACAGAGGAGATCTCAGCTGTTCCGCTCCGTTTCTTCAATGAAATTTGCATTTTATTTTCCGTGTTCAATTTGTTGTTCTTCTTTAAGCTAATGTCACCCTGCTTCAGCATACCTTCCCCACCTTCCATGTTTGTCAAACCAGAATTTGAACTACAGCCCAACTTTCCAAGGCCCACATTGAAGTTTTGATGATTATCAACAGAGCGCATGTCTTCAGGTCTCTTGATCTTACTTTTCAATTGGTCGGAATTAACTGCAGCAGAAGAACGATCAGAAGATCCAATTAATTTTTTTTCAAAAAAAGATCAATCTACTAGACAAGATTGAAGATTATTTCTCATGGACAACTAACCTCGCTCAGTGGATTTTTCTTTCAGTTTACCTCTGTTCTTTCCCTCTGCCAAGTTGTTCAGGTCAGTAGAAGTTTGATCCACTGAATTTCTCAATTTATTTGGAGGATTACTCAAGCCATTAAGACTTCTATTTTTCCTAGACTCCAAGTGCTGGTCTTTCAGAGAACTCTTGACATGAGTCTGGCCAATTCTGCTAACTGGATTTTGTATTTCTTTGAAAGTTTCACTCTTTTTTCCATGATTTGAAGTATCAGCTGATATTAGTCCATTGGCATGGTTCTGCAAAGCATTTCCACTCTCAGGCAATGGTAGCTGGTACAAAGCATAAAGCTTTTCTGTTGTCTCCTGCTCACTAATGTCACACCGGTTCATCCCAGGCCTACACAATTGCAACATTAAATTAACTGGCAGGATAACGTGTGCAAAACTCTCACATACGAAAGCACTTCAATAAAAGATTATCAAAATCTAATCAAATTTCTAAAATAGAATCACCATCAACTTAAATTATTCTTTCCTTGTCAGAGAAAAAGCAGCAAACTTACAGCCAATCTAGCATGCTACACAACCACTTATCAGGAAGTTGTTCTGGTTTTGTCCCAAAGGGCAGAAGGCGCCATTGCTGGCAAATGTCACAGCATACCCATTCATCCATAGGAGCCACCGCTGCCGGTTCAACCACATTTGAGGATTTGGACATTCTGATTCCACTGTCATCTAGGCCTTTAACCTTCCGCCAGTCACCAGAGGCCCTCTCAATTGCATCCTTACTTATGCGGGTTTCATCTAACCCCAAGCTGTTAAAAGAATCCACATTGTTTGCTCCTACTTTCTCATTGCTGTGAAGCTTTAACCTGTGCCTTCTATTTTCAGATTCAGGAGTGTCAGAATCAGTGTCCTTTCTACCTCTTGATGCTTCACTTTTAATCTTGAAGCCTTCCTCAAATGAACCAGCTATTTTCCCACCAGTAGTCTGCACCACTTTCAATTTCTTCTCTACAACAATTTCAGGCTTTTCTTTCTTGATTGATGCTTTGTCTTTAACTGTTTCAGGTAGTGTAGCTTTACGAGAAAGCTTCTTCTTTTGTGGGTCTAAGTGAGCACTGGACTTCATACCCTCGGAACCAGGTTTCCATTGCAACTCATTAGACAGGAAACCCTTGCTTTCAAAAGCCTCATTGTCTAATTTTTTATCTACAAGTGTTAGAGTAGTCTTCTCCTCCCCACGAGAAGCATAAACTTCATTCTTATGATTGACCTGCCTTTCTCTATGCACCACCTCCTTTTTCTTCTTCTTCTTAACCAATGTACTGTCATCTTGCTTTAAAGTCGTCTCATTGGCTAGCTTGGGCAAACCATCCTTTTTATTCTCAAGAGAAAGCATAGGTTTGGGTAATGGTAACCGTTTGTCCTTTCTTGACAACCCAAGTAGGCTATCATGAAGAGGTGATATCAATGCTCCACGAGGCACTGGGAAAGAAGTCATTGCCTGTTCAAAGGAGAAGATGGAGAGAGAGCAGGGTAAGCATACAGATGCAGTTTGAAATGAAATTCAGAAAATCAGAAGAACCATCACCTGAATTATCTTAGACGGAGACTCATCAGGTGCGCTTTGAGATATAGGCAGCATCCCTTCACTTAAGTCAGAGCTGTTTTCGGATGATGACAATGGTGAGTCATCAAGTCCTAGGCCACTGTATATTGCTGCATTTTTCAATCCAGTACTGTCAGAACCAACTTTGATTCGAAATTTAAGCAATCCACTATTCATTGGACTGCCTGATCTGCCTGAAGCTTCACCTTTAGAAGGGCAACTATTAGTAACTTTAGTAACCGGCAAGCATGAATCTACTCTCCCAGAGATACTGCCAGAAGTTTCCCTTGTATTATGAGAGGAAATAGTATTACAGACAAAAGCTTCTGGTCTCTTGGGTGGTGGAGCTTTTGGATTCTGAGAAGAACCCTGCATTTACACGGTCATATGGTGATTTGTTATATCATTTATATATAAGGTGTTACTCCATAATACCTTTTCACACACAATGGCTAAAATAATCGTAACAGCTTTTATATACCTCCAAGGGCACATTAACTGGAGTTGGTGTTGCATTGCAGTCTCTTTGTTGATTTATATTGTGCGGCACAACCGAAGAAGGGCGTTCATACGTAGGCAAAAATGAGCCATAACCACCAAACTTTGCCCCTAATAACAATTAGAAACCCATGCATGATTATTTCAAAACCACAAGGTTCATGTCAACCTGACAGTTTATGGTTTATAAATCTGAAAAGTTGGCAACTCACCCAACTTTTCAGCTGAAACTCCACCTTCAAAGTCTTTTTGGAAGTGACCAAGAAAACGCTCGATTTTCTCGTCCTAAACATATAATAATAGGAAGTCTAGTTAATTCAAATGAGCAAAAAAATTATAAATATGTACAGTTAGTAAATATACACAAACAAATTAACTTCTTTTTCTGGGTAACTAAAGCGTCCCAGCTGACCATAGAAAGTAAAGTGCCAAAGTTCTTCAATGAATATATCCCATGGAAATTATTTAGGGATTATTTAGTGCCAAATTTAATAATTCAACTTCATCAAACCAAAGAATCTTACCAAGCCTCCACCTCTTCTTTCTTTTCAATACATTGTTAAACAGTATCTATAAGTTCAATTTACTTTGTTCCTCATGTTTTCCCCCATCAATCAAACTCCAATATAATGGAAATGTTTTAAACGGCTATTGAGGCTTATGCCTTGAGGCTTGTCTTGAGGCAAGATTTTAACTTTTAGCCTCAAGACTTACACCTCCTATGAACCACAGGAAGCTAATGCCTCCCCCCATAGAAGAGGCAATGTAATAGCAATGTTTTAGATGGCTACTGAGGCTTACATCCTAAGGCTCGTCTTGAGGCAACGTTCTAATTGTTAGCCTCAAAACTCAGGCCTCCTTTGAACCACAAAAAGCTTACACCTCCAATAGAAGAGACTTACGCCCTTGTGGAAACAAACTGAAGTCTCTATGCTTCATGTAATTATTAGAATAATAATATCAATTTACCTCATTCTTCAAAAATATAAAAGTCTGAGGCGTGGCATTTGCCATTGAGACTTTAAAAGGATTACAAAAGATAATAGTAGTGAGGCTAAATAAATCCTTTTAGAACTTTTGTTTAAGTGGCAATTGACAGGGTTGGTTTTTTTATTCCCTTTATGACTACTATGTTAAAGTTTTTAACAATACTTGGCTATACTAATTTAGGATTTGGATTTGTTAAATGATTTTAGTTATGGTTTACGCCTCATACTGCCTCAAGGCTTATCACTTGCCTCTTCAAGACTGCCTTTAGCCTTTTAAAACATTGCGTAGTGGTTACAAACCTCAACCAAAAAGCAAAAGAGATTGAGCTTTTGGGAGAAAACCCATTCATTGATATGATGAAATGGACTACATAAACCTTCCAAGTAATCTAGTTAAGATTGATTTTTGTTCACTGGGTCATTCAAGAAACAAGTCACAATCCGGCAATAAATTCTAACACTTAAGAAAAAGGTCTTACAATGTAAGAGAGAGTAATGTCAGGGTCAATATCACCGCCATTATCCTTGTGATAGCAAGAAGCTTCGCCTTCTTCCAAGTCAATGCAATCCCCCATTATCATCGGCTCAACAGAGCCCACCATTAAATGTGAACCCAAAACCCTAG

mRNA sequence

ATGACTTGTGCCACAGTCAAAGGTCGAGCTGAAAATCGTATGGGGGAGGTATCACCAGGCTTGCCACTCGTATTATTAAGAGTCTCTAGAAGGAATGCTCCATGTAGATACTTCAGAGCAGATTGGAACATCATGACCCTTGAGATTTTGAGGGGTTTCCAATCCTTCAGCACCGACATGAATCTTCTCTTTCTTGCGTTTCTTGTGGCTGGGCTCCATGTTGTCATTATTGCACAACCTAGACTGCTTAACAAGGACCTAACAACAGAGGAGATCTCAGCTGTTCCGCTCCGTTTCTTCAATGAAATTTGCATTTTATTTTCCGTGTTCAATTTGTTGTTCTTCTTTAAGCTAATGTCACCCTGCTTCAGCATACCTTCCCCACCTTCCATGTTTGTCAAACCAGAATTTGAACTACAGCCCAACTTTCCAAGGCCCACATTGAAAAGGCGCCATTGCTGGCAAATGTCACAGCATACCCATTCATCCATAGGAGCCACCGCTGCCGGTTCAACCACATTTGAGGATTTGGACATTCTGATTCCACTGTCATCTAGGCCTTTAACCTTCCGCCAGTCACCAGAGGCCCTCTCAATTGCATCCTTACTTATGCGGGGTCAATATCACCGCCATTATCCTTGTGATAGCAAGAAGCTTCGCCTTCTTCCAAGTCAATGCAATCCCCCATTATCATCGGCTCAACAGAGCCCACCATTAAATGTGAACCCAAAACCCTAG

Coding sequence (CDS)

ATGACTTGTGCCACAGTCAAAGGTCGAGCTGAAAATCGTATGGGGGAGGTATCACCAGGCTTGCCACTCGTATTATTAAGAGTCTCTAGAAGGAATGCTCCATGTAGATACTTCAGAGCAGATTGGAACATCATGACCCTTGAGATTTTGAGGGGTTTCCAATCCTTCAGCACCGACATGAATCTTCTCTTTCTTGCGTTTCTTGTGGCTGGGCTCCATGTTGTCATTATTGCACAACCTAGACTGCTTAACAAGGACCTAACAACAGAGGAGATCTCAGCTGTTCCGCTCCGTTTCTTCAATGAAATTTGCATTTTATTTTCCGTGTTCAATTTGTTGTTCTTCTTTAAGCTAATGTCACCCTGCTTCAGCATACCTTCCCCACCTTCCATGTTTGTCAAACCAGAATTTGAACTACAGCCCAACTTTCCAAGGCCCACATTGAAAAGGCGCCATTGCTGGCAAATGTCACAGCATACCCATTCATCCATAGGAGCCACCGCTGCCGGTTCAACCACATTTGAGGATTTGGACATTCTGATTCCACTGTCATCTAGGCCTTTAACCTTCCGCCAGTCACCAGAGGCCCTCTCAATTGCATCCTTACTTATGCGGGGTCAATATCACCGCCATTATCCTTGTGATAGCAAGAAGCTTCGCCTTCTTCCAAGTCAATGCAATCCCCCATTATCATCGGCTCAACAGAGCCCACCATTAAATGTGAACCCAAAACCCTAG

Protein sequence

MTCATVKGRAENRMGEVSPGLPLVLLRVSRRNAPCRYFRADWNIMTLEILRGFQSFSTDMNLLFLAFLVAGLHVVIIAQPRLLNKDLTTEEISAVPLRFFNEICILFSVFNLLFFFKLMSPCFSIPSPPSMFVKPEFELQPNFPRPTLKRRHCWQMSQHTHSSIGATAAGSTTFEDLDILIPLSSRPLTFRQSPEALSIASLLMRGQYHRHYPCDSKKLRLLPSQCNPPLSSAQQSPPLNVNPKP
Homology
The following BLAST results are available for this feature:
BLAST of CaUC06G111770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G111770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G111770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G111770.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..245

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC06G111770CaUC06G111770gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G111770.1-exonCaUC06G111770.1-exon-Ciama_Chr06:6265422..6265428exon
CaUC06G111770.1-exonCaUC06G111770.1-exon-Ciama_Chr06:6267386..6267411exon
CaUC06G111770.1-exonCaUC06G111770.1-exon-Ciama_Chr06:6267747..6267841exon
CaUC06G111770.1-exonCaUC06G111770.1-exon-Ciama_Chr06:6268367..6268491exon
CaUC06G111770.1-exonCaUC06G111770.1-exon-Ciama_Chr06:6269042..6269234exon
CaUC06G111770.1-exonCaUC06G111770.1-exon-Ciama_Chr06:6270016..6270184exon
CaUC06G111770.1-exonCaUC06G111770.1-exon-Ciama_Chr06:6272989..6273111exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G111770.1-cdsCaUC06G111770.1-cds-Ciama_Chr06:6265422..6265428CDS
CaUC06G111770.1-cdsCaUC06G111770.1-cds-Ciama_Chr06:6267386..6267411CDS
CaUC06G111770.1-cdsCaUC06G111770.1-cds-Ciama_Chr06:6267747..6267841CDS
CaUC06G111770.1-cdsCaUC06G111770.1-cds-Ciama_Chr06:6268367..6268491CDS
CaUC06G111770.1-cdsCaUC06G111770.1-cds-Ciama_Chr06:6269042..6269234CDS
CaUC06G111770.1-cdsCaUC06G111770.1-cds-Ciama_Chr06:6270016..6270184CDS
CaUC06G111770.1-cdsCaUC06G111770.1-cds-Ciama_Chr06:6272989..6273111CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC06G111770.1CaUC06G111770.1-proteinpolypeptide