CaUC06G111510.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G111510.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 5916594 .. 5925036 (-)
Sequence length534
RNA-Seq ExpressionCaUC06G111510.1
SyntenyCaUC06G111510.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTCTTAGAGAAAGAGAAATTAGGGCTCCTCGTGCTGATCTGGCGAAAATTGGGAGAGAAGGATTTGAACTAATTGACGAATACTTTGGTCGAGCGCCGGCGGCGAGAAGGGTGGCGGCCAAGGCAAGGCCGATTCTGCCCCAGCCACCTCGTAAGGCGGAGCAACCTCCGAGGAAGAGGACGGAAAAACCGGCGGCGGCCGTGAAAACCTCCGATCAGGTGGCGAAAACCGGTGGTGGAATCGTGATAACAACTTGGCGTGCGTATGCAAAATGAATATAGCTTTGTTCCTCTCTAGAAGTAGAACTAGTTGGTGCTCATAATATATAAATATACATAAGTATGGGTACTTAACTGCAAAATATATATATATATATATATATGTATGTATGTATGTAAGTGTAGCTCTGCTAGTTTGCCTTTTGCTTTGCTATGTAGAATCAATATAATATAAAGTAATGTATTTGATCTAACCTTATGAAATCTCTCCCTCTCTCCCCGCAAAGTAAAAAAAAAAAAAAAAATATTGATTTAACTTCTCAAGTTTTTATCATTAAAAAAGAACCATTTAAAAAAAAGTTGAAATGTTTGGCAACTATTTTAAATAACTTTTTTAAGAATTGAATTCATAAAACAGGTTGGTTTGAGAGAAACACTTGAAATAAAATTATCAAAATATCCTCACTAATCCTCGATCTCATTTCCACCAATGACCAATTTAGTGGCCATCTCGCTCCTACTAGCTACCACCACACTAATGACGATCTCTAACTACCACCTTCAACAACAAATTACAACCTTTGACTCTAACAACAATCATCTTTGATGACCAAGTACATATATTATCTCCAACGACCAACTCTAACAAGTAACTCGAATGACCAATTAGACAGACGATATGCTAACAAAACAAAAAAGCTCAGCCAATGAAGATGTTTTTAAATACAAAAATTTGAAATGATAAGTTTAACCATCGTTCTTTTCTAGTAATTTGTCATTGCTAGAAACACTTTGAGTATGTAGCAACACAAACAAGCCTGTAATAACACTTTTGAGAAGAGATGCAACTAAATACATGAGTGTTTTTATTTTAAACAATGTTTATAAAAAAACGTTTAAATGAAAAAGACTTTTTGAAAAATATTTTTTTCCAAACAATCTAAACAAATCCTTAATATTTAGGTCAAATTACAAGTTTAGTTCCTAAATTTTGAAGTTTGTGTGTTTATTATACAGTACTTTTTTTTTTTTTTTTTTTGGAAAAAGGAAACATCAAGTGAGGTTCATCAATATAAATGTGAAAACAAATAAGAGGTTAGAGGAAAATCTTCCAATTAAGAGGTATGGTCGAAGCATCATAATTACAAAATAACTTAGATTCGGACACCAATTAGCAACTAAAGTGATGATGTTCTCCCCAAGATTAGCTTGACCCTTGGCATAATCCTTGAATATTCTATTGTTATGCTCAAGTCAAATAGATCACAAAATAGCCCCTGTGACGTTAATTCTAAGAGCGTGACTAACTCTTTTATCTTTAAAAAAGATAATATCATTAGAGACAATTGTAGCTAGGTATGAGCGGCTAAAGTTAAAAAGATGCCTATAGAGACTTGGTGAAGTTACAATTAATCTAAGAAAATATGATCATCAATCTCACACTACTCGATTTACAAAGCACACACCAATTTAAGTTTAAGCAACAACAAGTGAATCAGATTTGAGATTTTTCAGCCATGTTCAATCTCCTGTAAAAAAGAGTCCATATGAAAAACTTGCATTTCTTAAGAAGGAAAGAGGTCCACAAATTCTCTAACATTTGGATAAAAAAAGGATAAAATAGACATAAACTTCAACGTTGAAGAACCGAACCATATTAAAGCATATTGCATTTATACACTTTCGAAAGTACACAATCAAATAATTGACATAAACCTCAAGTTCATGAACCAACATATCAAATTAAGATAATTATTTCGAAATATAATTTAAAATGTTCAACCATAATTACTAAAGGTTTAAATTTAAATATCACAACATAGTCTAAAACCATTTAACGTTGGAACTTATAAAAAAAAGTCAGAAACCAATAAAAACATTAAATTTAAATATTACAAAAAGTTTCAAATAGTTCCAACCGTATATATTAAAGGAATTTTTTTTTTTTTTTGTCGTAGATTTTGAGACTAAAGTTTTCATTTTTGTTCTAAGTAATTAAAACATGTCATATATTTAGTCTTTAAGTTTTGAGTTTAATTTTAATTTCGTTCCTATATTTTAAAATGTTACAAATTTACCATGATGATATAAGTTGTGTTACAATTTGGTCCTTAAGTTTCAATATTTACACTTTTAACCTTGATTTTTAACTAAATACTGACTTTCAGTCTTTTATATTAATGACTACTATATAATTTAAAATAATTATGAATTTAGGTTTTAAAGTTAATCTTAATAATGATGAAAAATAGTTATACTTAATTAATTATCATTCTTTTAAATTAATTAATAGACATTAACACTAAAGGTGGAAAGTGACTATTTAGTGAAAAATCGAGGTTGAAAATGTAAATCTTGAAACCTAGGAACCAAATTGAAACAAAATTCAATTCTCAAAAGAAAATTGTAACATTTTGTAACTTAGGACTAACTTGAAATTAAACTCAAAACTTAAAAGACCAAACGTATAAGATTTTGAAATCTACGAACCAAATAGAAATTAGACCCAAAATATAGAGACCATAAATGTATTTTTTTTCAAATAATAATAATAATAATTGTCATCGAGAAAAGAACGAAGAAAAAGAGATGTGAAAAGAACTTCTTCGGCCCTATTTGGTTCCACATGAAAAAGAAATAATTATCCTTGTTCCCTCCCTTCTTTCATATGAAGATTCTCTGCTTTATTACGAACACAGAGATAAGTCATGCACAAGGAATGTATTAGATAACATGAAGTTACATCTCAAAATTAATTGACAATGAGAGGAATAGCTCATTTTCAAATATGGAATCTTCAACAGAATGAACGTCTATACATTTGAAGTTTTTGTAATATTAATCCATCAACTTAAGCTGTTTTTGGGTTTGATGTTGCTGATAAACCAGCAAGAATAATAGAATTTTGTTCCTCAACAAAGAATATAATTTTCCAAACTCTTGACCTTGAAGCTTAGTGAGAATTTGAAGCTTTTAGACTTAGAAACTCTCTTTATATTAGCTTTTGTGGTCTTGATTAAATGGTTCAGGATTCAATATACTAACACCTTGGGGAGGGTTTTCTTGATCAAAACTTTTTAGTTGGAATTCAACATATCCATCCATGCATGGACCATATTATAAATCACAAACATATTACAATAATCTTTCTTTTGATGCTGTTAAGGAAAAAATAAATAAATAATAGTTTTTGATAAGCAAGAAAAGAGTGGAAAAACCAACAAACCTTCTCTATTCTTTAAAATAATAATAATAAAAGGCCATCTTATTCATGCAATACAACCCAATTATTTCTATTAAAATTACCAATAATTTTCCAATTTTCTTATAAAAAAAATGTTATAATCCTTGTGGGTGATTCTGTTGTTGACCTAATCAAAGAAACAAACCTAACAAAAATAAAGTCTAAATTTATCTAAACTAGCAAAACAAAAAGAAGAGACAAGCTTGAAAGGCATTAGGGCATTTGTAAAAAGCACTACATCGTCAGTAGTACGTAAAGGTGATGTTAATGTCAAATGAGTTTTTCTTAACTGAAATTTGTCATCAACAATAATAATATATTTGAAACTATGAATGTTAAGTCTATTTTTGACAATATTTGGTGTGGTGAGACTGAAAGCTAGATTTTGAAGTTGATAGTACGAGTTTATAGTAGTTGAGTTCCGCTTATGTTAATTTTAAGCCTAATTCCTCAGAAAAATATCTTTAAATTGTTCTGAACTTTGGAATTAAATACAATTCAATCTTAATCATAGGTTTTTATATATATATAAAATTAAAATTAAAAAAAAAAACTTTGGCTTGATACGTATTTCTTTGGAACTTTTAGCGTTGTCTAACATCCCTTGGATAAATACGAATAAAGCAACTTTTCTTTTAAAATTACAATCAAGCAATTCCCATAATTAAAATATTTATATATTTATATATTTATATTTATACTCTTTTGCGCCACCATTCCTCGCCATCTGCCTTTTCCACGTGTGTATATATATATATATATTTCTAAATATCCTACGTGTCTAGTAGATATAATAACTAGTGAGATTTAAATCTTACTTAGCATCTAAAAATATATAATGATTAGTTGATTAGATTACCAATTTAGTGTGTTAGTTCTACGTTAATTGACATTGACATTTAATCTTTCACTGAAGTCAGATGTTAAAATCTCTATACACTATATTTGTTGTACTCATAAAAAGGAAAAAAACCTTCAAATTTAAGTCTCATTATGAAGCCATTTCGTTTTAGGGTTTTTTAGAGGTGTTCATGAGTTGGGTTAGATTGAGTTGAAACACTTTTTAGAACCAACTTAATTTTTCGGGTTGTAAGATTTTTTAACCCAAATAACTCTTATTAAATAATAAACCCAATCCAACCATGAAATGTTTGGGTTGATTTGTATTACTCGGGTTATTTATTTAAAATTTTGTTCTAAAAATAAGTAAAATGTTAATATGTAAAAAAATTATTTAATTATTTTCATGTATTGAATTAAGATAAACAACGCGATTTGAACTTATATTGTGATTTTTTTTCCAGATTGCTAAAAATGTGTTGTTGGAGAATAAATTTTCCAAAAAAATTATGAAATTAACTTGAATATATGTATATATAATTGTATCATAAGTACACAAAACACTGTTTAAATTTAATAGTAAATTCAAGTTGGTTTGAGTTATTTTAAGTGAACCCATAAACCAACCAAATCCATAAAATTTTCATTTATTTGAATCCAACCCTAAAACTACATTTATTTTTAGTTTTCAAAATTTAGTTTTGTATTTGAAAATATTGGTAAAAAGTTAGATAACAAACCAAGAAGCCTAGAAGTAGAACGAGTGTTTATAAGCTTAATTTTTCAAAAATTAAAAACTAAAAACCAAATAGTTACCAAATGGACCTTAACAATCTATGTAGTTTAGACTTTATTATTTGAGTGGTTTGTGTGCTTTTTAAAAATTTCCAACATCACAAATTGTCTTATGTTACAAGTTTTTTTTTTTTTTTTCTTAAGTTCAACTCGTAGGATTACAAAGCGAGCATATCTCAACTAACATATATACAATATGTGTTAACTACCAACAAATTTATAGTTTGAAAGTTCTATTTGAAGTTGGAGGACTCAATTTTTAAAATTGAAAGTTTAAGGGTATAATTGCGATTATCACCTTACTTCGAGAATTGTCCAAACTTTTATAACATATAGATTGATATGAAACTAAGCTAGAATAGATAATTCAAAAAAATTATTTCAAAGTATGGTGGAAAAATTACAAATACTACGAAGATAGAGTCCCTAGGTGCAAATTTACTCTTGTCGTCACCTCAATGACGTCTTAAACCCCTCAAAGAATCATTTTCAAAATAAGAAAAAGGAAAAAGGAAAAAAGAACCTTTGCCGACCCATTAACCCAATTTGAACGTTGAATATAACTTATTTTATTTTATCTTTTATTTTTAACTATCTCTAGAGAATAATTCAACCTTCATAATTTGGCTCTTTAGAAAAATAAATATATATACTTCTTAGATATAATAATTTTTATAAACACCTTAAAAAAATTAATAATAATTTTTAAAACCTAGTTTAGTAGTTATTTCATTTTTTATTATTATTATTTTTTTAAATTTAAATCTATAGAAACTATTTTCACCTCCAAATTTCTCTCCTCTTATCTACTTTTTACTAATGGTTTAAAAAAACTAAGCCAAATTTTGAAAACTAAAAAATTTGCATTTAAAAATTTATTTTTGTTTTTGAAATTTGGATAAGAGTTCAACCCTTGTACTTAAGAAAAATGCAAATCTATTACAAAAAAAAAAAAAAAAGAAAAGAAAATAGGTTTGATTTTTTAATTACCAAAATAATTATCAAATGAGGTCTCAATCATTTTCTAAGATAGATTATATATAAAATTCTTTTGTAAATATTTTTTTAATAAACTGCAATGTATATTTCGAACACATTTGGTCATAAAAACAATAATAAAATCATTTTCAAACTTTTTTGTGATACTTAGCCATATGATTCAAAGTATTTAAAAAAATTTCTATGATGCACTCATCTTTATGCATCACACTATCATCATATACATAAAAATAAATTTAAATATTTTTAAAAAGTAATAAGAAAAATTTTTAATGTGGCAAAGATACACAAATATAAGTGTATTTCAGAATGCACCAAAATATTTTCCTTTTCTTATTACCATTTATATAGAACATATTTAATCCATCTCAAACAATTAGTAAGTGTACTATATTCCAAAACTATATAAAATGGTTAAAATTTCATTTTTATACTTATATTTTGAAGTTTGTTCAATTTTAATTTGATCTATGTACTTTCAATAAATATTACATTGAGTCCCATGATTAGTTTATTATTGTTGATATATTTTTTTTATAAAAAAAATTGTTATGTATCGACATTTTTACTATAAATTTTGAAAATATATTCACATATAATATTTCTTTACATGAAAATTTTATTATTGTTTAACAAATTTCAGTAAACATTAACTTGATGAGACTAAATTTAAAATTTATTAAAAGTATGGAAATTAAAATTGAAAAAGCCTACTGTATTTTAACCTAATTTAAATTTTTTCTTAAAAAAATAAAAAATAAAACAAAATGTCATGCTAAAATATAGCAACCACCATCCTAAAAAGTTACCCCCCAAATATTCCCAATCCCTTTAACTAAATCAAAATCCATTATTTTACTCTCTAACAAATCAAATATCTTCGTAATCTTAAATCTTATATATTTCTTTTAAAAAATTTCTCAATAATTAAAAGTATCATTCGTTTCTTTAGAACACTTGAAAAATTCCTTTTGAACATACTTTTTCTTATAAGTGTTTAATTATATATAAAACACATTTAATTCATCTCAAACATAGTTTAACGGTTTAAGTGTTGTTCTAGTTCTAATTGAGATCCATAACCTATTAAAAAGGTAAAATAAAAGGCTATGTTACAATAAATTAATCACTAATTCTTCTAAAAGAATTTAATAAATAATTTAATTGATCATTCAAAAAAAAGTTAGGAGTCTCCCCAAATATTCCCAATCCCTTTCACCACATATATATATATATATATATATATATATATATATATATATATATTAGTTTTAAACCACCCTCCTAATTATTTTGAATTAAAAAGATGGAAAATATAAATTTATACCAATAAACTTATTTGAGATTGTATCCAAATTACATACTACTTGAAAAAACATTGTATGAAACTTATAATTTTATCAATGAATCAAACTCCTAACTTTTATAATGAATCAAATTATACTTTTAATTAGGATTTTTTTTTTGAAAATCGTCCCTATATTAATTCTAGTCCATTTTGTTCATCGGACATTTGAAAAAGCCTACACATGTAAGAAATTGATGCATTAATGAATTTCAAAGATAATATTAATAAAATGTCTAGATTGATTAATTTATGATAATTTTAGGAGTTAGTTTAATTGAAACATCTATATGTTTCACACAAGATTCTTTTAAACAAAATTTGAATGAGGGAGAAAACTCAAAGGTTTGATTGATTAAACCCTAAGCTTTATAGGTATGATTTGATATTTTCTAAAATAAAAAAATATATTATTCTACATTGTAACTTGAATGCATGTTGTTAAACTGAGTACAACTCAATTGGTATAAAGATTTTATTGATTCTCGCATTAATTATTTTTTAAATTAAAAAAGAAAAAAAAAAAAAAACAACTGTGGGGCCCAGCAATTGGCCAAAATTAAGCTTCTTCCCAGCTCTATATAAAGGACCAAAACCAAATGAAAGTTCACAAACCAACAAAGCCATTCAAAATCAAAGTTAAGGGGAGGAAGAAAAAAAAACTTTCCTTTTTCCTTTATTTTTTCTTCTTTTTAGGAAAAAAACATTTTTCTGAAATTATGGGTTGGAGAGAAAGAGAAATTAGGAATACTCGTGCTGACCTGGCGACGATTGGGAGAGAAGGATTTAAACTAATTGACGAATTCTTCGGTCGAGCGCCGGCAGCCAGAAGGGTGGCGGCAACGGAGAGGCCGGCTCAGCCGCGGCCGTCTAGTAAGGCAGAGCAACCTCCATGGAAGAAGAAAGAAAAACCGGCGGCGGCCGTGACTTCCGATCAGTTGGCCAAAACCCGCGGCGGCATCGTGATAACAACTTGGCGTGCAAAACGAAAATAG

mRNA sequence

ATGGGTTTTCTTAGAGAAAGAGAAATTAGGGCTCCTCGTGCTGATCTGGCGAAAATTGGGAGAGAAGGATTTGAACTAATTGACGAATACTTTGGTCGAGCGCCGGCGGCGAGAAGGGTGGCGGCCAAGGCAAGGCCGATTCTGCCCCAGCCACCTCGTAAGGCGGAGCAACCTCCGAGGAAGAGGACGGAAAAACCGGCGGCGGCCGTGAAAACCTCCGATCAGGTGGCGAAAACCGGTGGTGGAATCGTGATAACAACTTGGCGTGCAGAAAGAGAAATTAGGAATACTCGTGCTGACCTGGCGACGATTGGGAGAGAAGGATTTAAACTAATTGACGAATTCTTCGGTCGAGCGCCGGCAGCCAGAAGGGTGGCGGCAACGGAGAGGCCGGCTCAGCCGCGGCCGTCTAGTAAGGCAGAGCAACCTCCATGGAAGAAGAAAGAAAAACCGGCGGCGGCCGTGACTTCCGATCAGTTGGCCAAAACCCGCGGCGGCATCGTGATAACAACTTGGCGTGCAAAACGAAAATAG

Coding sequence (CDS)

ATGGGTTTTCTTAGAGAAAGAGAAATTAGGGCTCCTCGTGCTGATCTGGCGAAAATTGGGAGAGAAGGATTTGAACTAATTGACGAATACTTTGGTCGAGCGCCGGCGGCGAGAAGGGTGGCGGCCAAGGCAAGGCCGATTCTGCCCCAGCCACCTCGTAAGGCGGAGCAACCTCCGAGGAAGAGGACGGAAAAACCGGCGGCGGCCGTGAAAACCTCCGATCAGGTGGCGAAAACCGGTGGTGGAATCGTGATAACAACTTGGCGTGCAGAAAGAGAAATTAGGAATACTCGTGCTGACCTGGCGACGATTGGGAGAGAAGGATTTAAACTAATTGACGAATTCTTCGGTCGAGCGCCGGCAGCCAGAAGGGTGGCGGCAACGGAGAGGCCGGCTCAGCCGCGGCCGTCTAGTAAGGCAGAGCAACCTCCATGGAAGAAGAAAGAAAAACCGGCGGCGGCCGTGACTTCCGATCAGTTGGCCAAAACCCGCGGCGGCATCGTGATAACAACTTGGCGTGCAAAACGAAAATAG

Protein sequence

MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPAARRVAAKARPILPQPPRKAEQPPRKRTEKPAAAVKTSDQVAKTGGGIVITTWRAEREIRNTRADLATIGREGFKLIDEFFGRAPAARRVAATERPAQPRPSSKAEQPPWKKKEKPAAAVTSDQLAKTRGGIVITTWRAKRK
Homology
[Close]
BLAST of CaUC06G111510.1 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-27
Identity = 75/92 (81.52%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1  MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPA--ARRVAAK-ARPILPQPPRKAEQ 60
          MGFLREREIR  R DLAKIGREGF++IDEYFGRA +  ARRVAAK ARP LPQPPRKAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRKRTEKPAAAVKTSDQVAKTGGGIVITTWR 90
          PPR R EKP AAV TSDQVAK GGG VITTWR
Sbjct: 61 PPRIRKEKPVAAV-TSDQVAKHGGGTVITTWR 91

[Close]
BLAST of CaUC06G111510.1 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-18
Identity = 60/84 (71.43%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 11 APRADLAKIGREGFELIDEYFGRAPAARRVA--AKARPILPQPPRKAEQPPRKRTEKPAA 70
          A R DLAKIGREGF+LIDEYFGRAPA RR A  A ARP LPQ P KAEQPPRK+ EK   
Sbjct: 2  ARRGDLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPPRKKREKMPV 61

Query: 71 AVKTSDQVAKTGGGIVITTWRAER 93
          AV   +QVAK  GGIVITTWRA +
Sbjct: 62 AV-NCNQVAKARGGIVITTWRAAK 84

[Close]
BLAST of CaUC06G111510.1 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-18
Identity = 58/82 (70.73%), Postives = 62/82 (75.61%), Query Frame = 0 

Query: 11 APRADLAKIGREGFELIDEYFGRAPAARRVAAKARPILPQPPRKAEQPPRKRTEKPAAAV 70
          APRADLAKIGREGFELIDEYFGR PA RR A  ARP LPQ P KAEQPPRK  EK    V
Sbjct: 2  APRADLAKIGREGFELIDEYFGRVPATRRPAV-ARPALPQAPCKAEQPPRKMREKLPVPV 61

Query: 71 KTSDQVAKTGGGIVITTWRAER 93
             +QVA+  GG+VITTWRA +
Sbjct: 62 -NCNQVARARGGVVITTWRAPK 81

[Close]
BLAST of CaUC06G111510.1 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-17
Identity = 67/96 (69.79%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 89  RAEREIRNTRADLATIGREGFKLIDEFFGRAPAA---RRVAATE-RPAQPRPSSK-AEQP 148
           R EREI +T A+LA IG EGFKLID+FFGRA      R VAATE RPAQ +P  K AEQP
Sbjct: 3   RREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQP 62

Query: 149 PWKKKEKPAAAVTSDQLAKTRGGIVITTWR--AKRK 178
           P K KEK  A VTSD LAKTRGGIVITTWR  AKRK
Sbjct: 63  PSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 98

[Close]
BLAST of CaUC06G111510.1 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 46/57 (80.70%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 11 APRADLAKIGREGFELIDEYFGRAPAARRVAAKA--RPILPQPPRKAEQPPRKRTEK 66
          APRADLAKIGREGFELIDEYFGR PA RR AA A  RP LPQ P KAEQPPRK  EK
Sbjct: 2  APRADLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPPRKMREK 58

[Close]
BLAST of CaUC06G111510.1 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.0e-27
Identity = 75/92 (81.52%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1  MGFLREREIRAPRADLAKIGREGFELIDEYFGRAPA--ARRVAAK-ARPILPQPPRKAEQ 60
          MGFLREREIR  R DLAKIGREGF++IDEYFGRA +  ARRVAAK ARP LPQPPRKAEQ
Sbjct: 1  MGFLREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQ 60

Query: 61 PPRKRTEKPAAAVKTSDQVAKTGGGIVITTWR 90
          PPR R EKP AAV TSDQVAK GGG VITTWR
Sbjct: 61 PPRIRKEKPVAAV-TSDQVAKHGGGTVITTWR 91

[Close]
BLAST of CaUC06G111510.1 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.3e-18
Identity = 67/96 (69.79%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 89  RAEREIRNTRADLATIGREGFKLIDEFFGRAPAA---RRVAATE-RPAQPRPSSK-AEQP 148
           R EREI +T A+LA IG EGFKLID+FFGRA      R VAATE RPAQ +P  K AEQP
Sbjct: 3   RREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQP 62

Query: 149 PWKKKEKPAAAVTSDQLAKTRGGIVITTWR--AKRK 178
           P K KEK  A VTSD LAKTRGGIVITTWR  AKRK
Sbjct: 63  PSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 98

The following BLAST results are available for this feature:
BLAST of CaUC06G111510.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47422.16.1e-2781.52hypothetical protein Csa_021740 [Cucumis sativus][more]
KAG6575081.11.4e-1871.43hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575082.15.2e-1870.73hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN47421.11.5e-1769.79hypothetical protein Csa_021737 [Cucumis sativus][more]
XP_023548315.11.1e-1280.70multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p... [more]
BLAST of CaUC06G111510.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G111510.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG953.0e-2781.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1[more]
A0A0A0KI197.3e-1869.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1[more]
BLAST of CaUC06G111510.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..159
NoneNo IPR availablePANTHERPTHR33484FAMILY NOT NAMEDcoord: 98..176
coord: 11..95
NoneNo IPR availablePANTHERPTHR33484:SF3SUBFAMILY NOT NAMEDcoord: 98..176
coord: 11..95

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC06G111510CaUC06G111510gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G111510.1-exonCaUC06G111510.1-exon-Ciama_Chr06:5916594..5916858exon
CaUC06G111510.1-exonCaUC06G111510.1-exon-Ciama_Chr06:5924768..5925036exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC06G111510.1-cdsCaUC06G111510.1-cds-Ciama_Chr06:5916594..5916858CDS
CaUC06G111510.1-cdsCaUC06G111510.1-cds-Ciama_Chr06:5924768..5925036CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC06G111510.1CaUC06G111510.1-proteinpolypeptide