CaUC05G094980.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G094980.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr05: 25574988 .. 25577155 (-)
Sequence length279
RNA-Seq ExpressionCaUC05G094980.1
SyntenyCaUC05G094980.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTACCTTTCCACCTCGACGGTATTGGGCTCATACCCTTGTCACTAAAACTTTCCGATTCTGGCCAGATACCTATACTTTCCGGCGAGTAGTTAAAACTAACTTGTTACATTAGTAGTGCAGTGCAGAGAATTAATGTCTGATATATAATATTATACATAATTACCAGTGTCCAAGATGCCGATAATGGTATCATATTGTTGAGAGGAAGAGGTTGGGGGATCTGATTTGGGATTGGCGTCGATTTTGACGCTAGTCTGACTAACCAAGAAATCCCATGAATGAGTTGTGTGCAACTTCAATATTGGATCTGGAAAAACCGAAACAACTCCAGGGCTTTGTCTCATGGCATGGGCTTCCTGTTCTGACAGACGAGCTGCAAATCCTATGAACCCATGTTTATATATGTGTACCACTTCGTTTCTACGTTCCATACAAGATCAAACAACAAATCATATGTGAGTTTTGCTCTCTGCCTCTGTGAATCTATAATCTAGCTAACATTGATCTTCCCTTTCATATACGTCAGGTTTTAATTGTATCTTTCAATTTTCGTGGCCATAGATATGATTGATATGTAATACAGAGCATCGTATTTAAGTTTAGTCTCAACTTTTTATATCTGCCATGCCTTTAAAATATATGATTGTTTAAATTTTATATTATTAGTATCTTGTTTTCAAAATTTTGATTGTGTCTAATAACTCTACCGGATATGTATTAGGTAAAAGAATGCTTGGATGACAATTTAATTTTGTGCATGACGAATTAGGTCAAAAGACTTTTAAAACACACATTTGAAATTTTAAGACTATTGAAAATAAGTTTATGAACATATTAAATACTTTTTAAACTCAAGGTTTAAATACTTATACTTTTGGCTTTAGTTTATTTTGGTCCTTATACGATCAAAATGTTTATTTTTATTTTTTTTCTGATTTTTTTAAGTGTTCGGGCAAACTTACACGTGCACATTTTGGCCTCTATAATTTTAATTTTAGTTCATTTAGTCTTATACTCTTAAAATGTTCATTTTAATCTTTGTACTTTTTACTATTCATTAATTTGGTTTAGTCATTTTAGTCCTTTAAAAATAAAATAAAAATGAAAATGAAGGACTAAAATGATCCATTTTTAGAAGTACAAAGATGAAAATGAATATTTTGAAAATAAGTAGACCAAAATGAACATAATTTAAAAACATGAAAATACATAGACCAGAGTTAAAACATAAAATTCAATAATCCATAGCTTAATTTGTTTTTTAAGATAAATTGGGAGATTTATAATGTTACCGCCTGTTGACAGAGGTAAGAAGCCGAAGGAAGTCAGTCGTGGAGGCAGACGCGGATCCCATGTAGACAATATAAACGCCATTTGTTCCACCTTCAGCAGCTTCAGCTATTTTAGCATTTTCGGAAAGAACCAAAACCAAAAAGACAAATAAAGAAATGGTTTGCATGGCGAGTTTTGGGTTCTGTTCTGAATTGGGTAAATTCCCCTTAGATTTCAAAGCTCTTCCGCTCACCGAGTGCTAATTTATATGTTTTTACAGATGAAAACTGGTGGTCGAGAAGAATGGAAAGGAGGTGGAAAATGGTCAGTTGGTGGGTTTCATGAGAGCACCCGCACTGCCGAAAATGTCAAGCTTTTCCCTTATCCACATGTAGTGCGCCATGGTTAAAAATGGTGGCGGACTGATGACACTGGCGATGGTGGAGATTTTGAAGATCACAGGTAAGATTTTTGCTTTTTCTATATGCATATATGATCAATCAAGCCCATACTAGATGATTGTTTTTATTTGGTAATAAATTTTAAAACCCCCCATGACGTTTAGATGGGGTGGGTTTTTCTCTTTAATTTCTTCATTAATAACTCTATGGAAGTTCAATTTTGTGTTAATTTGTTGGCCTTAGTTCTCTTAAAATTAATAACGTATGACTTGCAAATCAAGATATTGTGAAGAATTTTATTTGCTTGTTTTGGGGATTCATGCTGGGTTTATGTTCCTAAATGATGGAAGAAGTTGAGTGTGTTACCAACTATATATTAGGTTTAGAATGTAGAAGTGAGATATACTCAAACCCCTCAGTTTTCTCCTTTTGGAATGCTAGTCTTAACCATAACGCAAGTTTTAGCTCCCACTTATAAAATTGGTTGA

mRNA sequence

ATGCAGATGAAAACTGGTGGTCGAGAAGAATGGAAAGGAGGTGGAAAATGGTCAGTTGGTGGGTTTCATGAGAGCACCCGCACTGCCGAAAATGTCAAGCTTTTCCCTTATCCACATTGCGCCATGGTTAAAAATGGTGGCGGACTGATGACACTGGCGATGGTGGAGATTTTGAAGATCACAGAAGTGAGATATACTCAAACCCCTCAGTTTTCTCCTTTTGGAATGCTAGTCTTAACCATAACGCAAGTTTTAGCTCCCACTTATAAAATTGGTTGA

Coding sequence (CDS)

ATGCAGATGAAAACTGGTGGTCGAGAAGAATGGAAAGGAGGTGGAAAATGGTCAGTTGGTGGGTTTCATGAGAGCACCCGCACTGCCGAAAATGTCAAGCTTTTCCCTTATCCACATTGCGCCATGGTTAAAAATGGTGGCGGACTGATGACACTGGCGATGGTGGAGATTTTGAAGATCACAGAAGTGAGATATACTCAAACCCCTCAGTTTTCTCCTTTTGGAATGCTAGTCTTAACCATAACGCAAGTTTTAGCTCCCACTTATAAAATTGGTTGA

Protein sequence

MQMKTGGREEWKGGGKWSVGGFHESTRTAENVKLFPYPHCAMVKNGGGLMTLAMVEILKITEVRYTQTPQFSPFGMLVLTITQVLAPTYKIG
Homology
The following BLAST results are available for this feature:
BLAST of CaUC05G094980.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC05G094980.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC05G094980.1 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC05G094980.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC05G094980CaUC05G094980gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC05G094980.1-exonCaUC05G094980.1-exon-Ciama_Chr05:25574988..25575082exon
CaUC05G094980.1-exonCaUC05G094980.1-exon-Ciama_Chr05:25575415..25575481exon
CaUC05G094980.1-exonCaUC05G094980.1-exon-Ciama_Chr05:25575486..25575596exon
CaUC05G094980.1-exonCaUC05G094980.1-exon-Ciama_Chr05:25577150..25577155exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC05G094980.1-cdsCaUC05G094980.1-cds-Ciama_Chr05:25574988..25575082CDS
CaUC05G094980.1-cdsCaUC05G094980.1-cds-Ciama_Chr05:25575415..25575481CDS
CaUC05G094980.1-cdsCaUC05G094980.1-cds-Ciama_Chr05:25575486..25575596CDS
CaUC05G094980.1-cdsCaUC05G094980.1-cds-Ciama_Chr05:25577150..25577155CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC05G094980.1CaUC05G094980.1-proteinpolypeptide