CaUC04G078140.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G078140.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Ciama_Chr04: 27536688 .. 27536975 (+)
Sequence length	288
RNA-Seq Expression	CaUC04G078140.1
Synteny	CaUC04G078140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTTTTGATTCATAGGGTGGCCATGCTACTTCTCTGTATTTTGTTTTTGGCTCTTCAACCAGAAGGAGCCAGTGGGCTGAGAAACATTGATCTAGCACTCAGATGGGATAAAGTACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGAAAGAGCACTGGCTTTTGCACCAGCACCTTTGACAGGTTTCGATCCAACCCAGTTGAATAAAAGAAGGATTCGAAGAGGATCAGATCCCATTCACAACAAATGTTAA

mRNA sequence

ATGGGGGTTTTGATTCATAGGGTGGCCATGCTACTTCTCTGTATTTTGTTTTTGGCTCTTCAACCAGAAGGAGCCAGTGGGCTGAGAAACATTGATCTAGCACTCAGATGGGATAAAGTACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGAAAGAGCACTGGCTTTTGCACCAGCACCTTTGACAGGTTTCGATCCAACCCAGTTGAATAAAAGAAGGATTCGAAGAGGATCAGATCCCATTCACAACAAATGTTAA

Coding sequence (CDS)

ATGGGGGTTTTGATTCATAGGGTGGCCATGCTACTTCTCTGTATTTTGTTTTTGGCTCTTCAACCAGAAGGAGCCAGTGGGCTGAGAAACATTGATCTAGCACTCAGATGGGATAAAGTACACATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGATGTATCTGTTGAGGATGATTGGGAAAGAGCACTGGCTTTTGCACCAGCACCTTTGACAGGTTTCGATCCAACCCAGTTGAATAAAAGAAGGATTCGAAGAGGATCAGATCCCATTCACAACAAATGTTAA

Protein sequence

MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDWERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC

Homology

[Close]

BLAST of CaUC04G078140.1 vs. NCBI nr
Match: KGN64003.1 (hypothetical protein Csa_013092 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 83/95 (87.37%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG LIHRV MLLLCI FLALQPEG +GL NIDLALRWDK HIPIFNSFKFVKDVSVEDDW
Sbjct: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
           R LAFAPAP TG DPTQLNKRR+RRGSDPIHNKC
Sbjct: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of CaUC04G078140.1 vs. NCBI nr
Match: KAA0036085.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 3.7e-39
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG LIHRVAMLLLCI FLALQPEG +GL NIDLALRWDK HIPIF+SFKFVKD SVEDDW
Sbjct: 1  MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDW 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
             LAFAPAP TG DPTQLNKRRIRRGSDPIHNKC
Sbjct: 61 GGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of CaUC04G078140.1 vs. NCBI nr
Match: KAG6584463.1 (hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 10 MLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDWERALAFAPA 69
          MLLLC+ FL LQPEG SGL NIDLALRWDK+ IPIFNSFKFVK+ SVEDDW R LAFAPA
Sbjct: 1  MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPA 60

Query: 70 PLTGFDPTQLNKRRIRRGSDPIHNKC 96
          PLTGFDPT+LNKRRIRRGSDPIHNKC
Sbjct: 61 PLTGFDPTRLNKRRIRRGSDPIHNKC 86

[Close]

BLAST of CaUC04G078140.1 vs. NCBI nr
Match: KAG6607448.1 (E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 6.2e-26
Identity = 66/93 (70.97%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 3   VLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDWER 62
           VL  +VA LLLCI  LALQ +G +GL NI LALRWDK++IPI NSFK VK     DDW  
Sbjct: 324 VLGPKVANLLLCIGILALQSQGTNGLTNIVLALRWDKLNIPISNSFKLVK-----DDWRG 383

Query: 63  ALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
            LAFAPAP  GFDPT+LNKRRIRRGSDPIHNKC
Sbjct: 384 TLAFAPAPSMGFDPTRLNKRRIRRGSDPIHNKC 411

[Close]

BLAST of CaUC04G078140.1 vs. NCBI nr
Match: PRQ16182.1 (hypothetical protein RchiOBHm_Chr7g0181441 [Rosa chinensis])

HSP 1 Score: 114.4 bits (285), Expect = 5.4e-22
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG L ++ A+LL+CI FLALQPE  SGLR++DLALRWDK H    NS   VK V+VE D 
Sbjct: 1  MGCLAYKGAILLVCIGFLALQPEKVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVE-DL 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
          +  L+ APAP   FDP+Q NKR +R+GSDPIHN+C
Sbjct: 61 QAKLSLAPAPAMTFDPSQSNKRTVRKGSDPIHNRC 94

[Close]

BLAST of CaUC04G078140.1 vs. ExPASy TrEMBL
Match: A0A0A0LQI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.6e-41
Identity = 83/95 (87.37%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG LIHRV MLLLCI FLALQPEG +GL NIDLALRWDK HIPIFNSFKFVKDVSVEDDW
Sbjct: 1  MGFLIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDW 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
           R LAFAPAP TG DPTQLNKRR+RRGSDPIHNKC
Sbjct: 61 GRMLAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of CaUC04G078140.1 vs. ExPASy TrEMBL
Match: A0A5D3BHX9 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00900 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG LIHRVAMLLLCI FLALQPEG +GL NIDLALRWDK HIPIF+SFKFVKD SVEDDW
Sbjct: 1  MGFLIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDW 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
             LAFAPAP TG DPTQLNKRRIRRGSDPIHNKC
Sbjct: 61 GGMLAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of CaUC04G078140.1 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.6e-22
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG L ++ A+LL+CI FLALQPE  SGLR++DLALRWDK H    NS   VK V+VE D 
Sbjct: 1  MGCLAYKGAILLVCIGFLALQPEKVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVE-DL 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
          +  L+ APAP   FDP+Q NKR +R+GSDPIHN+C
Sbjct: 61 QAKLSLAPAPAMTFDPSQSNKRTVRKGSDPIHNRC 94

[Close]

BLAST of CaUC04G078140.1 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-22
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG L +R A+L +CI FLALQPE  SGLR++DLALRWDK H+    S   VK V+VE D 
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVE-DL 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
          +  L+ APAP   FDP Q NKR++R+GSDPIHN+C
Sbjct: 61 QAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CaUC04G078140.1 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-22
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MGVLIHRVAMLLLCILFLALQPEGASGLRNIDLALRWDKVHIPIFNSFKFVKDVSVEDDW 60
          MG L +R A+L +CI FLALQPE  SGLR++DLALRWDK H+    S   VK V+VE D 
Sbjct: 1  MGFLAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVE-DL 60

Query: 61 ERALAFAPAPLTGFDPTQLNKRRIRRGSDPIHNKC 96
          +  L+ APAP   FDP Q NKR++R+GSDPIHN+C
Sbjct: 61 QAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

The following BLAST results are available for this feature:

BLAST of CaUC04G078140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64003.1	2.0e-40	87.37	hypothetical protein Csa_013092 [Cucumis sativus]	[more]
KAA0036085.1	3.7e-39	86.32	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLA...	[more]
KAG6584463.1	6.6e-36	86.05	hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607448.1	6.2e-26	70.97	E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. soro...	[more]
PRQ16182.1	5.4e-22	60.00	hypothetical protein RchiOBHm_Chr7g0181441 [Rosa chinensis]	[more]

BLAST of CaUC04G078140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G078140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI0	9.6e-41	87.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1	[more]
A0A5D3BHX9	1.8e-39	86.32	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A2P6P2N1	2.6e-22	60.00	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4...	[more]
M5WYZ5	5.9e-22	58.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]
A0A314XM06	5.9e-22	58.95	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311...	[more]

BLAST of CaUC04G078140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..95
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 1..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC04G078140	CaUC04G078140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G078140.1-exon	CaUC04G078140.1-exon-Ciama_Chr04:27536688..27536975	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC04G078140.1-cds	CaUC04G078140.1-cds-Ciama_Chr04:27536688..27536975	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC04G078140.1	CaUC04G078140.1-protein	polypeptide