CaUC02G028760.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G028760.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 2969141 .. 2969731 (+)
Sequence length327
RNA-Seq ExpressionCaUC02G028760.1
SyntenyCaUC02G028760.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACCCAGAGGAACTAGACTATGGTGTGCAGAAGTATCAAAAGGAAAAGGTAAAGTGGCATCTCGTTCTTTTCTCCATCCAATCAACGATAAACAGTTAAAAGTTGAAGGGAAATGATACCAATTCTAGGCTTAAACTTTTGCAATCATTTGGTCCTTGGGTAAAAAGGTAGTACAAGAATCTAATGAAAGTGATTTTTCTCTCTCAACAATCAACAACCAGAGCAGAAGCAGAGTAAAAAAAATGAACAGATAGTTTGGTAGAGAGAGATATATAGAGGGAGAGGGTTGTAAGAACCCCAAAATAAATGCAGGTCATGTTAGGAGGTAGCACGTACATCGTAAACTTCCACTGCCCTCCTTTTGCGTATGGAGTTGAGAGTTTGGTGGTTAAATGTTGGCATCACCAAGTTGGAGATGCTGACACTGCCACTCGGTGGAGCATCTACAAGAGTCCTACTTCTTCTTTGGCCCGTCCTGACAGCAATGTGCTAGATGTAGATCTTCAAAAGAGACATCTCCATTGTTGCCATAAAAATCTTCACTGTTTCTTCACATTCAAAGCAATCCCATTCATAATTATCTAG

mRNA sequence

ATGGCAGACCCAGAGGAACTAGACTATGGTGTGCAGAAGTATCAAAAGGAAAAGGTCATGTTAGGAGGTAGCACGTACATCGTAAACTTCCACTGCCCTCCTTTTGCGTATGGAGTTGAGAGTTTGGTGGTTAAATGTTGGCATCACCAAGTTGGAGATGCTGACACTGCCACTCGGTGGAGCATCTACAAGAGTCCTACTTCTTCTTTGGCCCGTCCTGACAGCAATGTGCTAGATGTAGATCTTCAAAAGAGACATCTCCATTGTTGCCATAAAAATCTTCACTGTTTCTTCACATTCAAAGCAATCCCATTCATAATTATCTAG

Coding sequence (CDS)

ATGGCAGACCCAGAGGAACTAGACTATGGTGTGCAGAAGTATCAAAAGGAAAAGGTCATGTTAGGAGGTAGCACGTACATCGTAAACTTCCACTGCCCTCCTTTTGCGTATGGAGTTGAGAGTTTGGTGGTTAAATGTTGGCATCACCAAGTTGGAGATGCTGACACTGCCACTCGGTGGAGCATCTACAAGAGTCCTACTTCTTCTTTGGCCCGTCCTGACAGCAATGTGCTAGATGTAGATCTTCAAAAGAGACATCTCCATTGTTGCCATAAAAATCTTCACTGTTTCTTCACATTCAAAGCAATCCCATTCATAATTATCTAG

Protein sequence

MADPEELDYGVQKYQKEKVMLGGSTYIVNFHCPPFAYGVESLVVKCWHHQVGDADTATRWSIYKSPTSSLARPDSNVLDVDLQKRHLHCCHKNLHCFFTFKAIPFIII
Homology
[Close]
BLAST of CaUC02G028760.1 vs. NCBI nr
Match: KGN43406.1 (hypothetical protein Csa_020315 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-19
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 18 KVMLGGSTYIVNFHCPPFAYGVESLVVKCWHHQVGDADTATRWSIYKS-PTSSLARPDSN 77
          + MLGGSTYIVN HC PFAYGVESLVVKCWHHQVGDADTATRWSIY S    SL   DSN
Sbjct: 2  QAMLGGSTYIVNCHCSPFAYGVESLVVKCWHHQVGDADTATRWSIYMSLLLLSLGHADSN 61

Query: 78 VL 79
          VL
Sbjct: 62 VL 63

[Close]
BLAST of CaUC02G028760.1 vs. ExPASy TrEMBL
Match: A0A0A0K6F3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031670 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 18 KVMLGGSTYIVNFHCPPFAYGVESLVVKCWHHQVGDADTATRWSIYKS-PTSSLARPDSN 77
          + MLGGSTYIVN HC PFAYGVESLVVKCWHHQVGDADTATRWSIY S    SL   DSN
Sbjct: 2  QAMLGGSTYIVNCHCSPFAYGVESLVVKCWHHQVGDADTATRWSIYMSLLLLSLGHADSN 61

Query: 78 VL 79
          VL
Sbjct: 62 VL 63

The following BLAST results are available for this feature:
BLAST of CaUC02G028760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43406.14.9e-1980.65hypothetical protein Csa_020315 [Cucumis sativus][more]
BLAST of CaUC02G028760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G028760.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6F32.4e-1980.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031670 PE=4 SV=1[more]
BLAST of CaUC02G028760.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC02G028760CaUC02G028760gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC02G028760.1-exonCaUC02G028760.1-exon-Ciama_Chr02:2969141..2969194exon
CaUC02G028760.1-exonCaUC02G028760.1-exon-Ciama_Chr02:2969459..2969731exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC02G028760.1-cdsCaUC02G028760.1-cds-Ciama_Chr02:2969141..2969194CDS
CaUC02G028760.1-cdsCaUC02G028760.1-cds-Ciama_Chr02:2969459..2969731CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC02G028760.1CaUC02G028760.1-proteinpolypeptide