CaUC01G012300.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC01G012300.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionsyndetin
LocationCiama_Chr01: 24011974 .. 24019697 (+)
Sequence length791
RNA-Seq ExpressionCaUC01G012300.1
SyntenyCaUC01G012300.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATAAAATGAATATTAGAGTGCAATTTTATTATAATTTATTAAGCTTTGGTATTATTACAAGAATGGTTGCCCAAGGCCGTCGGTCGCCGACTGTCGTTGCTGAAATCAGTCAAGATTCGAGAGTTCCCTAAAGTCTACGAAACAGCAAATAAAACAACACAAATAAGAGACGCATCATCGTCCGTCCTTCCCACTTCCGTAACATTTTTGGGTCGAAACAGATTGACTGCAGTCCTGATCTATGTAAGATTCAACAGATCGAATTTCAGGGGAGTGTCATCGCATCAAATGTGCGGCACAGGGCGGCTTGAACTTGTGAACCTGATGTGAAATGCAGCCAAACCTGTTTCCATTTGGTAGTGTTCTCGGAAACCCTTTGGCGTTCGATGGTGATTTGAGCGAAGGATTCGAGACTTCCAGGTTTCTCTTCTTTGTTCCGTTTTTACTGTTACAAGGAGGTGGAATGGACTTGTCCAAGGTTGGGGAGAAGATTTTGAGCTCCGTGAGGTCAGCTAGATCGCTTGGACTTCTTCCTACCACTTCTGATCGGCCGGAGGTAACCGATTGCACTATTGGCGTAGTTTTGGATTATTTTAGGTAGCTGTTGTGTAGTTGATGCTTACTGGTTCCGAGGAGTGCTTCTAAATTCAATTGAAGCATTCTTTAGCTACAGTATTCTTCCTTGACTAATCAATGGCATTGATTTGGTTATAGAGATAATCAACAGTTTGTGTTTATGTATAAAATTTGATGAATTGGGTTCCAGAGTATGGAGGCTTTTACAATTAAAATAGGTAGCCTGTAATTAAGATGTGTACTTGGGATTAGAAACACAAATAATTTCATGAATCCAGAAGAGCTGGCTACGAAAGAGAGGGCAAGAGATGGTATATCTCCCTCTCGAACCCCTGGCCAATGGGGATTGTAAAGTACGTCCCCAATTTATTTAGTTAAGAATAGAAGTTACAGAAACCACTATGAAAAGCTGCCCAAGGGGATGTAGTCTGTTTTGTAACATTAAAAGAGAAAAAAAACTGTGATCCTAAAGATATCTGCATTTCCTTGATTGAAGGAAAAGGAGGTGCAGGTCAAGGATTTTAGAGCTATTAGCTTGGTGAATGAGATTCAAAATGACTGGAAAAGTTATTGAGGAAAGGACAAAAAGATTATTATGTTTTGAGTATGTTGCTTTCGAAATCCTTGATTGAATATCAAGTTATCAACAAATCCTGAGTGGTATACACCATGACATATTTGGGCTAATAAAGTGAGGGTGTACAATTAACTTTGAACACAATGGTGCATTCTTGTAAAAAGATCAGGAATCTCAAGCATATCTTCCCTGCTTGCCCTTTTGCATCAGCATTTTTTTAATAGTTTTTTTTTTTTTTTTTCTTCTGAAAGATATAGCGTCCTCTTTGAATCGGTCTGTCAGTCAAAAATGCTCCTTTCATATTCTTTTTGGAGACACCCTTTCAAGAATCGGAAGGAACATGGATGCATTTGATCTAGGCCTTCTTTTGGTGTATGCAAATGGAAAATAACCAAGTTTCAGATAGAGCTAAGAACCCTCCTAGACGACATCTCATAAGGATGATGATCAAATTTGCTAACAATGATCGTATGCCAAAGAGAATTGGATTCAAGGGCAAAACGACAAGACCATTTAGCTAACAACTCCTTGTTGTGAGCCTTTAAGTTCCCAACTTCTAACCGCCTGAATTGATAGGCCTCTTAAGAATCTCCTATCTAACTGGATGTGCTCCTTTTCCTTTCTTCTCATCCATCCCCTCCCAGAAGCATCTGGTACATAAAATGCTCCTTTAGCAATCTCCGAGAAACTGTTTAATCATAGTGTCATTGAAGAAAGGTGTTCTCACCTCGTGAGTTTCTTAATGCAGAATCCTAATTGGTTGGATTCTCAATTTTCTTCATGTAAGAAGCATTAGGTGGCTTACGAAAAAAAGAAGCATTAGGTGGCTTACAAAAAAATAAAAAATAGAAAATGAAGCATAAGTGTAAATTATTCTCAACCAGTCATGGTTTCTACACATTCTTCATTGAATAATAGTTCCTCTCAATGTAATATGCAAAAACAAAGATTATTCACTCTATGACATTGGCCCATTCTGAAACTTAATATTTCGTCTCAAAGTGTTATGAATTTACCCAAGGTTCTCAAGAATTCAACAAATTGGAGGATAATGAGGAGTCAGATTCAGAATTGAGCCTTAGCAGTGGTGATTTGGATTTCCTAAGCCTGATTTGAAGGATAACACCAAAAGACCTCCTAGCTAATTTAATCTGATAAAGCTATATATTACAAAAAAAATTGTGCGAAGCATTCCACAAAGAAGCCGATAATTGGACATTTTCATAAGAAAATTGCTAGAGGAGAATGCATCATATTTCTCACAAAAGTGGGAAGGAAAAGATTTTATTACGAAAGTTCTATTTATTATACTGAGGGGAAATGTTCTCATACCGTGAGGTGGGAGGTGTTGTCTAGGCTACTGGTTCTAGGTGGGTTAGGCCTTTGTAACCCAATAGTGAAACCCTTATGGCGAAATTGCTTTAGTGATTCCATCATGATTCTGCCACTTAATGGCACAAGGTTATTGTAACAAGCATGATCCTCATCCTTTTGAATGGATGGTTAGTGGTGTTAAAAGGTAGTTCTAAAAACCAGTGGAAAGATATGATTGGAGAGATACTTACTTTTAGGGGATAAGTGGTTAGGAGATAGACCCCTATGCTCCTTATATTCCCAGTTATATTAGTTGTCCTTGTTGAAGTACTAGTAGCTTCTGACTGTTTCTCATTTTGAGAACTTGTCTTCTTCTTTAGTGGGTGTTTGGGGCGCTGAGTTGAGTTATGAAGTCTGTGTTTGTGGTGTAGAATTGTGAAGATGGAGTTCCTCGATAAATGTGCAAAAGAGAGAATGAGAAAAAGATGGATTTCGAAGTTGGTGGAGTTGAGTTATTTAACCCCGACTTATAAAGTTAGTTGGCCAAACACTCCCTTAAGTTTTTGTTCTTCGTTGACCAATAGAGAAACAACAATGTGCTGGCTTTGTTATCTTTGCTGGGGGACTTTCACTTTAGACCCAATAGGAGGGATGCCTACTTTTAGAGTCCTAGTCCGTCCAAAGGCTTTAGTCGTAATTCTTTCTTTTGGTGTTTGATCAATTCCCCATTAAGTGTTTCCTTTTTTGCCTCAGCATGGAAGGTTAAGATTCCCAAGAAGATCAAGCTTTTTGTTTGGCAGGTTTTTCTTGGAAAAGTTAACACCTTGGATAGGATCTTGGCTAGCAGTCCATGGTGGTTGGGCCATTATGTTGTATTCTATGCTGGAGAGCAATGGAGGACCTTGATCATCTTCTTTGGAGGTGTGATATCGCCAGTGCTATAACGAGTCACTTTGGATCTCCTTTTCCATTCTCCTTTTTGCAAGAAATGGGTTTTTTTGAGGCATGCTTGAGGTATGTGCTATTATAGGGGGTCTTGGGGACAAGAGCAATCATAGAATCTTTAGGGGGGTTGGGAAGGTCTTTCTTTTGAACAAGAGACAAAACATTTTATTGATGAAATGAAAAGAGATTAATGCTCAAGTGATACAAACTCCTTCAAGGAGTGAAATAAGGAAAAAAATAGCAATAGATAAACAAAAACAATCCTAAAAGCAATTAAACTCTTAGTCTGGGTTTGGACCCTTTTGTGGGCTTTATTTTTGTATGCTAGTGTATTCTTTTACTTTCTCTAAGTGAACGTTTGGTTTTCATAAAAAAATAGTTTTATATGGAAAAAAATTGTCCTCTTTTCTAAATGATTGTGAGTTTGAATTATATGAAATCTTACCACATTAGAATTTCCAAAGGCATATTCACTCAGTTGGCTTATAAGAAAGTTTGGATTTTGAAAATTTTTTTGGAAGATGAAAGGTCTTCAAAGCATCGCATTTATGACGTAGGTGAAGATTTTGGAAAGCCTTTCGTGCAAGAATCTGGTTATTCATTTTCCTTCTGGGTAATAAGAGTTTTTTTCTCTCTGATGCTATTTAATGAGGTTAGAAGTGGTTCAGTCAGTCAATGGCAGTCACAAAAGAAAAATCAATCAAATGGCAGCATAAAAGTCTTTGGCCCGTTTCCCATGATTCCAGGGATTCCCTAAGAAGGTTTTTTAATTATTTTTTATATTATTACTATTGATTATTATTATTATTTTATTTTAATTTTTATTATTATTATCAATGCAGTCTCTCCATGCTTCAAATCTGTTTTGTTAAATCTGATTTTCTCCCCTGCTTGATTTGGTCTTTTGTGTTTTGAATTGTCTCCAAAGGGTTTTTTTGAAGTCAAGTCTATAACTTCGCTGGAAAGTTTTGACTTCATCAAGGGAGCTTCAATCATTTCTCTGCTTTGAAATCGCAGTTTCTTCTAGGCACTAAGGTGTTTGCCTTTGAGTTGTTTTGGTTTGTTGCTGCGCTCCTCAACAAGGCTAAAATCTTCTGTCAAGATGGCATCGTAGTTTTTTCACTGTTAATTTGACGCACTCCTGTTGTTGGTTCCTCCGGATTGTTGTTATTTATTAGGCTCTGGAAACTTTGGTGTTTTATTGTTTCTTTGGATTTTCCTTTTCTATTTTTGACTTCCTTAGAGTTTGTATCCTCTGAACGTTTTTCTTCTTTTTCATCCATTGCTAAAATGTTTGATTCCTGCTGAAAGATAATTAAACATCTCTTTTTGCATTTTTGTTTATCTGGAAAAAAAAAATGAATGACTGGGAATTCAATCATTTGTTTCTCTTACTGAGCAGGTTCCTGCACGTGCTGTGGCTGCGGCAGCTGTTGCCCGTGCGCTTGCAGGATTGCCTCCTCACCAGAGATTTAGTCTCTCATCTAGCTCGGAAGAGCTGAGCTCGATATATGGCAGTAGAAATCATGGTCACGAAGTAGAGGAACTAGAGGAAGTTTTCTATGAAGAGGTGCTACTCGCTATTGTTACTATCATTTACTTGGGATCATTCATTTACAGGCACGATCCTTGTAAATACTGTGTTACATTCTTCAAATTATAAAACCTCTTATTAATTCACCTCATGTATTTAGATTAAATTATAAATTTAGTTCATGAGCTTTCAAACACTTAAGAAAATGTCTAATAAGTCTTGTACATTTTTTGTTAAACAACTTTTATTGAGAAAAAAAAAGGAAAGAATACAAGACCATACAATAAGAGAAGTCCTCAAAAGTAAGCCTTATTGAAGAAAAGGGATTCAATTGTACAAAATAGAACTTGTAGAGTAATACAAAAGCTCTTCAAAGTTGAAGCCCAAAGAGAAAAATGAAATCTAATGAGATACTAAACATCCGAAGGATCCCTCCCCAAACCTCTAAACATGCTATTATTCCTCTCTCTCAAAAGATCCCACAAATAACACACACCTCGTTAAGCCATAAAAATTGGCTCTTTCATGAAAAGGCGGATGCAAGGGGATTTCCCTGATCATATCACTAGTATCCCTATGACATTGATGGAACTCCCACCCGCTTGTCCCTTTCAATCTTATGTCTATCTTTCTAAGCCTCTTCCTCTCCTAAAAACAGTGCGTTCAAGTTTGGATGCCCCTTGATTGGTCAATCGGGGATGAGAGAAAGGAATCATCCTCTGAGTAGTTTACAATTGAAGGAACTGTTTATGCTTTTGTAAGGAGGAATCGTTCTTGATCTCGAATCATATTATTTCCTTCTTTGAAGAGATGTTTGGTCTAAGGATTAACAGGGGCAAGTGCAGCATTATGGGCCTCAATTGTGATGAGGAGAAGTAGATGGGTGGAGGTGGTGGGATGCGATATCTTGGGTTGCTCCTTGGTTGGTAACCCTTAGTTTGTTGATATTTGGGACTTGGTGGTGGATAAAGTGTGAATGGGTTAGCCTCTTGGAAAAAAGGCTTCTTTTCTAAAGTGGGGTGTCTTACTTTAATTAGATCGGTGTTAAGTGGTATCCCTATCTACTTTTTCTTCCTTTTTAGAGCTTCGTGCAAGGTTTGTCGAAATGTGGAGAAGTTGATGCGTGATTTTCTTTGGGAAGGAGTCAAAGAAGGAAAAGGGAAGGGATCTCATTTGATTGATGAGGGGTATAAAGAGGCCCATTGATATGGGGGGAGGTTAGGGAAGTTAAGAATTCGCAACAAATCTTTGTTAGCTAAATGACTTTGGCATTTCACTTTTGAACCCAACTCCCTTTGGCATAAGATTATTGTTAGTAAACATGGCCCTTACCCCTTTGAGTGGCTATCTAAGGGGGGTTAAGGCTCTCACTGAAACTTGTGGAATATTTCGAAAGAGCTCTCTTCTTTTATTTGTTTTATTCATAGTATGGTGGGGGAGAGGAAAGACACTTATTTTTGGGAAGACCATTGGGTGGTGGAGTAGTCTCTTTGTTCTTTGTTCCCTCGCTTGTATCATTTGGATTTTCTTGTGTGGAGTGGGAGCTCGTGTTCCTTTTCTTTTGGGTTCCGTTGTGTTCTGTCCAATAGGGAAACAACGGAGGTGACTGCTCTTTTTTCTTTACTTGAGGGTCACCTTTTATGCGTCAGAGAAGAGAAGTGAGGATTTAGAATCCTAATCCTTTGGAGGGGTTCTGGCGTAAGTCTCTCTTTCATAATTTGATTGATCCTTCCCTCCTAGGATTGTCTGCCTTTCAGTGCTTTGGAGGATCAAATTTCCTAGGAAAGTGGGGTTCTTTACTTTGCAAGTTTTACACGACTGTGCTAACACGATGAATCGGCTTAAAAGGAAGTTGCCCTCGCTTGTGGGTCCTTTTTGTTGCATTCTTTGTCGGAAGGCGGAGGAAGATCTAGACCATATTCTTTGGCGTTGTGAGTTTGCTAGCTTGGTTTGGGACTCCTTGTTCCAAACGTTTGGCATTATGGTTGTTGACACAGAGATGTTCGTGTGTTACTTGAGGAGTCCCTTCTCAACCTGCCTTGTGGGGAGAAGGGTTGCTTTCTTTGACCTGCGGGGGTGTGTGTTATTTTGTGGGTGGTGTGGGGATGTGCGAAACAATAGGGTTTTTAGAGGTGTAGAGAGGGTTCCTAATGAAATTTGGTCCCTTGTTCATTTTCATGTTTCTTTGTGGCCTTTGAATTCAAAAACCTTTTGTAACTATTCTATAGATGTTATTTTGCATAGTTGGAGTCCCTTTTTATAGAGGGTGTTTCTCCTTTTTGTGGGTTAGTTTTTTGTGTGCCCTTATATTCTTTCATTTTTTCTCTCATTGAAAGTGGTTATTCTCATTAAAAAAGAAAAAAAAAGAAGAAGGAACTGACCCAAATTCACCCTCTTCATGATAGGTCCTTGTAATTTCATTTTTGTAGAAAAGGATATGAGACTTTTCATTTAGTAATTGAAAGGGGACCAATGCTCAAATTACCTCACATTGAAGACAATGCAAAATAAGACCTTAGAATAAATAAGGAAACAAACTGAAGCAGGCAAAAATAATAAAAAAGAAAACCAAGACAAAAAGGACTTGCTAAAAAGGAAAAATGAAAGCATCCCAGAAGCAAAAGAAATCTTGATAAAAAAATCCACCGAAAAGCTCCGATAATGATCTCCAAAAAGAAGCTTTCAAAAGTGCATAGCAATTTCGCCCTTGAAACAAAAATGAAGTAAAAGATACTTTAAGTGTAATCCAAAACAGGATATTAATCCTCTTAGGA

mRNA sequence

AAAAATAAAATGAATATTAGAGTGCAATTTTATTATAATTTATTAAGCTTTGGTATTATTACAAGAATGGTTGCCCAAGGCCGTCGGTCGCCGACTGTCGTTGCTGAAATCAGTCAAGATTCGAGAGTTCCCTAAAGTCTACGAAACAGCAAATAAAACAACACAAATAAGAGACGCATCATCGTCCGTCCTTCCCACTTCCGTAACATTTTTGGGTCGAAACAGATTGACTGCAGTCCTGATCTATGTAAGATTCAACAGATCGAATTTCAGGGGAGTGTCATCGCATCAAATGTGCGGCACAGGGCGGCTTGAACTTGTGAACCTGATGTGAAATGCAGCCAAACCTGTTTCCATTTGGTAGTGTTCTCGGAAACCCTTTGGCGTTCGATGGTGATTTGAGCGAAGGATTCGAGACTTCCAGGTTTCTCTTCTTTGTTCCGTTTTTACTGTTACAAGGAGGTGGAATGGACTTGTCCAAGGTTGGGGAGAAGATTTTGAGCTCCGTGAGGTCAGCTAGATCGCTTGGACTTCTTCCTACCACTTCTGATCGGCCGGAGGTTCCTGCACGTGCTGTGGCTGCGGCAGCTGTTGCCCGTGCGCTTGCAGGATTGCCTCCTCACCAGAGATTTAGTCTCTCATCTAGCTCGGAAGAGCTGAGCTCGATATATGGCAGTAGAAATCATGGTCACGAAGTAGAGGAACTAGAGGAAGTTTTCTATGAAGAGGTGCTACTCGCTATTGTTACTATCATTTACTTGGGATCATTCATTTACAGGCACGATCCTTGA

Coding sequence (CDS)

ATGCAGCCAAACCTGTTTCCATTTGGTAGTGTTCTCGGAAACCCTTTGGCGTTCGATGGTGATTTGAGCGAAGGATTCGAGACTTCCAGGTTTCTCTTCTTTGTTCCGTTTTTACTGTTACAAGGAGGTGGAATGGACTTGTCCAAGGTTGGGGAGAAGATTTTGAGCTCCGTGAGGTCAGCTAGATCGCTTGGACTTCTTCCTACCACTTCTGATCGGCCGGAGGTTCCTGCACGTGCTGTGGCTGCGGCAGCTGTTGCCCGTGCGCTTGCAGGATTGCCTCCTCACCAGAGATTTAGTCTCTCATCTAGCTCGGAAGAGCTGAGCTCGATATATGGCAGTAGAAATCATGGTCACGAAGTAGAGGAACTAGAGGAAGTTTTCTATGAAGAGGTGCTACTCGCTATTGTTACTATCATTTACTTGGGATCATTCATTTACAGGCACGATCCTTGA

Protein sequence

MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHEVEELEEVFYEEVLLAIVTIIYLGSFIYRHDP
Homology
[Close]
BLAST of CaUC01G012300.1 vs. NCBI nr
Match: XP_008462106.1 (PREDICTED: syndetin [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 2.7e-63
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGS LGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS
Sbjct: 1   MQPNLFPFGSALGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE
Sbjct: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. NCBI nr
Match: XP_038895533.1 (syndetin isoform X1 [Benincasa hispida])

HSP 1 Score: 252.3 bits (643), Expect = 2.7e-63
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS
Sbjct: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLPTTSDRPEVPARAVAAAAVAR LAGLPPHQRFSLSSSSEELSSIYGSRNHGHE
Sbjct: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARVLAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. NCBI nr
Match: XP_011654226.1 (syndetin isoform X1 [Cucumis sativus] >KAE8652795.1 hypothetical protein Csa_022853 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGS LGNPLAFDGDLSEGFET RFLFFVPFLLLQGGGMDLSKVGEKILSSVRS
Sbjct: 1   MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE
Sbjct: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. NCBI nr
Match: XP_022152900.1 (syndetin isoform X1 [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 9.4e-61
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPF LLQGGGMDLS+VGEKILSSVRS
Sbjct: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHG E
Sbjct: 61  ARSLGLLPATSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGQE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. NCBI nr
Match: XP_022152901.1 (syndetin isoform X2 [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 9.4e-61
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPF LLQGGGMDLS+VGEKILSSVRS
Sbjct: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHG E
Sbjct: 61  ARSLGLLPATSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGQE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. ExPASy TrEMBL
Match: A0A1S3CG39 (syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGS LGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS
Sbjct: 1   MQPNLFPFGSALGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE
Sbjct: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. ExPASy TrEMBL
Match: A0A0A0LV98 (Vps54_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G145910 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.9e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGS LGNPLAFDGDLSEGFET RFLFFVPFLLLQGGGMDLSKVGEKILSSVRS
Sbjct: 1   MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE
Sbjct: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. ExPASy TrEMBL
Match: A0A6J1DJ46 (syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.6e-61
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPF LLQGGGMDLS+VGEKILSSVRS
Sbjct: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHG E
Sbjct: 61  ARSLGLLPATSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGQE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. ExPASy TrEMBL
Match: A0A6J1DF95 (syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.6e-61
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPF LLQGGGMDLS+VGEKILSSVRS
Sbjct: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHG E
Sbjct: 61  ARSLGLLPATSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGQE 120

Query: 121 VEELEEVFYEE 132
           VEELEEVFYEE
Sbjct: 121 VEELEEVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. ExPASy TrEMBL
Match: A0A6J1HII5 (syndetin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464715 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.3e-59
Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 0 

Query: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFLLLQGGGMDLSKVGEKILSSVRS 60
           MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPF LLQGGGMDLSKVGEKILSSVRS
Sbjct: 1   MQPNLFPFGSVLGNPLAFDGDLSEGFETSRFLFFVPFFLLQGGGMDLSKVGEKILSSVRS 60

Query: 61  ARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSSIYGSRNHGHE 120
           ARSLGLL TTSDRPEVPARAVAAAAVARALA LPPHQRF LSSSSEELSSIYGSR HG E
Sbjct: 61  ARSLGLLHTTSDRPEVPARAVAAAAVARALAALPPHQRFGLSSSSEELSSIYGSRIHGQE 120

Query: 121 VEELEEVFYEE 132
           VEELE+VFYEE
Sbjct: 121 VEELEDVFYEE 131

[Close]
BLAST of CaUC01G012300.1 vs. TAIR 10
Match: AT2G27900.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 97/142 (68.31%), Postives = 110/142 (77.46%), Query Frame = 0 

Query: 1   MQPNL-FPFGSVLGNPLAFD--GDLSE-----GFETSRFLFFVPFLLLQGGG-MDLSKVG 60
           MQPNL FPFGSVLGNP  F+  GDL+E      FE+SR  F +PFLL QG G MDLSKVG
Sbjct: 1   MQPNLFFPFGSVLGNPFLFNGGGDLNELGSGAAFESSRVFFLLPFLLSQGTGVMDLSKVG 60

Query: 61  EKILSSVRSARSLGLL--PTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELS 120
           EK LSSV+SA SLGLL  P+ SDRPE+PARA AAAAVARALAGLP  QR S+SS++ EL+
Sbjct: 61  EKFLSSVKSATSLGLLPSPSISDRPEIPARAAAAAAVARALAGLPSDQRLSISSTATELN 120

Query: 121 SIYGSRNHGHEVEELEEVFYEE 132
           SIYG+R    +VEELEE FYEE
Sbjct: 121 SIYGNRPLPQQVEELEEGFYEE 142

[Close]
BLAST of CaUC01G012300.1 vs. TAIR 10
Match: AT2G27900.2 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 97/142 (68.31%), Postives = 110/142 (77.46%), Query Frame = 0 

Query: 1   MQPNL-FPFGSVLGNPLAFD--GDLSE-----GFETSRFLFFVPFLLLQGGG-MDLSKVG 60
           MQPNL FPFGSVLGNP  F+  GDL+E      FE+SR  F +PFLL QG G MDLSKVG
Sbjct: 1   MQPNLFFPFGSVLGNPFLFNGGGDLNELGSGAAFESSRVFFLLPFLLSQGTGVMDLSKVG 60

Query: 61  EKILSSVRSARSLGLL--PTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELS 120
           EK LSSV+SA SLGLL  P+ SDRPE+PARA AAAAVARALAGLP  QR S+SS++ EL+
Sbjct: 61  EKFLSSVKSATSLGLLPSPSISDRPEIPARAAAAAAVARALAGLPSDQRLSISSTATELN 120

Query: 121 SIYGSRNHGHEVEELEEVFYEE 132
           SIYG+R    +VEELEE FYEE
Sbjct: 121 SIYGNRPLPQQVEELEEGFYEE 142

The following BLAST results are available for this feature:
BLAST of CaUC01G012300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462106.12.7e-6399.24PREDICTED: syndetin [Cucumis melo][more]
XP_038895533.12.7e-6399.24syndetin isoform X1 [Benincasa hispida][more]
XP_011654226.11.0e-6298.47syndetin isoform X1 [Cucumis sativus] >KAE8652795.1 hypothetical protein Csa_022... [more]
XP_022152900.19.4e-6196.18syndetin isoform X1 [Momordica charantia][more]
XP_022152901.19.4e-6196.18syndetin isoform X2 [Momordica charantia][more]
BLAST of CaUC01G012300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC01G012300.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CG391.3e-6399.24syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1[more]
A0A0A0LV984.9e-6398.47Vps54_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G145910 PE=... [more]
A0A6J1DJ464.6e-6196.18syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1[more]
A0A6J1DF954.6e-6196.18syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1[more]
A0A6J1HII54.3e-5994.66syndetin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464715 PE=4 SV=1[more]
BLAST of CaUC01G012300.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27900.11.3e-3968.31CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int... [more]
AT2G27900.21.3e-3968.31CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040047SyndetinPANTHERPTHR13258UNCHARACTERIZEDcoord: 12..133
NoneNo IPR availablePANTHERPTHR13258:SF4VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATEDcoord: 12..133

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC01G012300CaUC01G012300gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC01G012300.1-exonCaUC01G012300.1-exon-Ciama_Chr01:24011974..24012533exon
CaUC01G012300.1-exonCaUC01G012300.1-exon-Ciama_Chr01:24016792..24017020exon
CaUC01G012300.1-exonCaUC01G012300.1-exon-Ciama_Chr01:24019696..24019697exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC01G012300.1-five_prime_utrCaUC01G012300.1-five_prime_utr-Ciama_Chr01:24011974..24012308five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC01G012300.1-cdsCaUC01G012300.1-cds-Ciama_Chr01:24012309..24012533CDS
CaUC01G012300.1-cdsCaUC01G012300.1-cds-Ciama_Chr01:24016792..24017020CDS
CaUC01G012300.1-cdsCaUC01G012300.1-cds-Ciama_Chr01:24019696..24019697CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC01G012300.1CaUC01G012300.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032456 endocytic recycling
biological_process GO:0042147 retrograde transport, endosome to Golgi
cellular_component GO:1990745 EARP complex
cellular_component GO:0005829 cytosol