CSPI07G08880.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08880.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein RADIALIS-like 1
Location	Chr7: 6710811 .. 6712068 (+)
Sequence length	633
RNA-Seq Expression	CSPI07G08880.1
Synteny	CSPI07G08880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCCTTTTTCCTTAGAACAGAAATATTGAATTCTTTTTATTCTAACCCATTTTTTTTCTCTAGTTTTGCTCTCTCCATTATTTGAAACCCAATTAAAGTTAGAAATATACATTCAAGAAATTAAACTATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACAGAAGCTCAAGAAGCAATTAATTGCTACTAACATATGATCAAAAGATGGAGGTAATTTAGTTTCATTTCGTGTCTACTTGATAATATTTTTTTACCTAAACTTTGATAAAACGTTTTTTAAATTTTACGTATACAAATTTAAGAAACAACAAATTCAATAATAATTGTCATGAAATGCCATTTTTCCGTTTGTTGTTTCCAATGTTAAACTTTAAAATATTATTTTCATGAAAACTTTTTACTCATTTTGTTATTTAAAGATTAGAAACTCGGTTATGCTTCTCGAGAAAACAAGAAACAATATATGAGAAATAAGAAACAATTTAAATGAGAGTTGAAATGTAATTTTAGAAAATGCAAAAGATATACAATACATATTTTTTGAAATTAAAACAATAAAATTCGAGACTTATTCTATGACAAAGTCTTTTTAACCATTTGACTCTTTATCTTATTCTGAAGCCACAAATATTATATCCTTTATTCACACTTCACAGCCCATAGTTTCATTATCAATGAACAGTGACCTCTTCGTTTCTCATAGATTTAAAGCCAGATTCAGAGACAAAGAGAAAGACAATAAAATCTTTTCTAATAATTGAGAGACGACAAAATTGTCTTGTATTAAAGTATTGATATAATTAAATATATCTGTTTTCCTTTGACCTTTTTTCAGGATGAGAAAGATGAAGTTGAATGAAGCCAGGTGCAGTACTGGAAGAATAAAAAGGAAAGAGCCATTTTCTTGCTGTTGCACCATTTTCTTCTTTTCTAACAAAACAGCAATATATATATATATATATTTGAAGTTCCTTATTGTATCTTTTCAAATCCAATTGTAATGGTCAAATGAATAAGCTTTTATGAATTAAACCATCAATATAATGATTTATATTGAGATTGAAGAGGCC

mRNA sequence

GATCCTTTTTCCTTAGAACAGAAATATTGAATTCTTTTTATTCTAACCCATTTTTTTTCTCTAGTTTTGCTCTCTCCATTATTTGAAACCCAATTAAAGTTAGAAATATACATTCAAGAAATTAAACTATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACAGAAGCTCAAGAAGCAATTAATTGCTACTAACATATGATCAAAAGATGGAGGATGAGAAAGATGAAGTTGAATGAAGCCAGGTGCAGTACTGGAAGAATAAAAAGGAAAGAGCCATTTTCTTGCTGTTGCACCATTTTCTTCTTTTCTAACAAAACAGCAATATATATATATATATATTTGAAGTTCCTTATTGTATCTTTTCAAATCCAATTGTAATGGTCAAATGAATAAGCTTTTATGAATTAAACCATCAATATAATGATTTATATTGAGATTGAAGAGGCC

Coding sequence (CDS)

ATGGCCTCATTGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAAGAAGCTTTGGCAATGTATGATAAAGACACACCTGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGGAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTCTGGAGGATGTTAAGCATATTGAGTCGGGCAAAGTTCCTTTTCCTTACAGAAGCTCAAGAAGCAATTAA

Protein sequence

MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRSSRSN*

Homology

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-25
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 2  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSS 77
            IE+G VPFP YR+S
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-24
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 5  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKH 64
          S  GSG  W+AK+NKAFE ALA+YDKDTPDRW NVA+A+ G+T EEVK+HY++L+ED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGKVPFP-YRSSRSN 80
          IESGKVPFP YR++  N
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.1e-24
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 3  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRSN 80
           IE+G VPFP Y+++  N
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-22
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRSN 80
          + +IE+G+VP P Y++  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-22
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT K+NK FE ALA YD+DTPDRW NVA+A+GGK+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGKVPFP-YRSSRSN 80
          V  IESG+ P P YRS+ +N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy TrEMBL
Match: A0A0A0K344 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSRSN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy TrEMBL
Match: A0A5A7SYM4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00290 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy TrEMBL
Match: A0A1S3BGF6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.6e-36
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy TrEMBL
Match: A0A6J1IA78 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471063 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSR +
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of CSPI07G08880.1 vs. ExPASy TrEMBL
Match: A0A6J1GJG0 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454835 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSR +
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of CSPI07G08880.1 vs. NCBI nr
Match: XP_004151116.1 (protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_020265 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 2.9e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSRSN
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of CSPI07G08880.1 vs. NCBI nr
Match: KAA0036170.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of CSPI07G08880.1 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 9.5e-36
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of CSPI07G08880.1 vs. NCBI nr
Match: XP_022952073.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-like 1 [Cucurbita maxima] >XP_023554705.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG6572043.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.5 bits (389), Expect = 4.0e-34
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRSSRSN 80
          VKHIESGKVPFPYRSSR +
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of CSPI07G08880.1 vs. NCBI nr
Match: KAG6588435.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
           MAS+S+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+ED
Sbjct: 59  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 118

Query: 61  VKHIESGKVPFPYRSS 77
           VK IESG+VP+PYR+S
Sbjct: 119 VKFIESGRVPYPYRNS 134

[Close]

BLAST of CSPI07G08880.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 114.0 bits (284), Expect = 5.6e-26
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 2  ASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +S+S+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRSS 77
            IE+G VPFP YR+S
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CSPI07G08880.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 3.6e-25
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 3  SLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          S+S++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRSSRSN 80
           IE+G VPFP Y+++  N
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of CSPI07G08880.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRSN 80
          + +IE+G+VP P Y++  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CSPI07G08880.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRSSRSN 80
          + +IE+G+VP P Y++  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CSPI07G08880.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 101.7 bits (252), Expect = 2.9e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT+KQNK FE ALA+YDKDTPDRW NVAKA+G K+ EEVKRHY +L+ED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

The following BLAST results are available for this feature:

BLAST of CSPI07G08880.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	7.8e-25	68.42	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	2.3e-24	67.53	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	5.1e-24	64.10	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q1A173	2.8e-22	63.75	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q6NNN0	3.6e-22	62.50	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of CSPI07G08880.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K344	1.4e-37	100.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 S...	[more]
A0A5A7SYM4	1.6e-36	96.20	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BGF6	4.6e-36	94.94	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
A0A6J1IA78	1.9e-34	91.14	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471063 PE=4 SV=1	[more]
A0A6J1GJG0	1.9e-34	91.14	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454835 PE=4 SV=1	[more]

BLAST of CSPI07G08880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151116.1	2.9e-37	100.00	protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_0...	[more]
KAA0036170.1	3.3e-36	96.20	protein RADIALIS-like 1 [Cucumis melo var. makuwa]	[more]
XP_008447025.1	9.5e-36	94.94	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022952073.1	4.0e-34	91.14	protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-li...	[more]
KAG6588435.1	1.7e-29	82.89	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CSPI07G08880.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	5.6e-26	68.42	RAD-like 1	[more]
AT2G21650.1	3.6e-25	64.10	Homeodomain-like superfamily protein	[more]
AT1G75250.1	2.0e-23	63.75	RAD-like 6	[more]
AT1G75250.2	2.0e-23	63.75	RAD-like 6	[more]
AT1G19510.1	2.9e-22	65.28	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 1.6E-8 score: 44.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 10..58 score: 6.434677
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..58 e-value: 3.89122E-7 score: 40.6366
None	No IPR available	GENE3D	1.10.10.60		coord: 4..71 e-value: 7.9E-24 score: 85.2
None	No IPR available	PANTHER	PTHR43952:SF74	PROTEIN RADIALIS-LIKE 2	coord: 7..74
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..58 e-value: 6.0E-7 score: 29.6
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 7..74
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 10.615332
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G08880	CSPI07G08880	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G08880.1.utr5p1	CSPI07G08880.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G08880.1.cds1	CSPI07G08880.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G08880.1.utr3p1	CSPI07G08880.1.utr3p1	three_prime_UTR
CSPI07G08880.1.utr3p2	CSPI07G08880.1.utr3p2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G08880.1	CSPI07G08880.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity