CSPI06G03970.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI06G03970.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	40S ribosomal protein S25
Location	Chr6: 3704905 .. 3706722 (-)
Sequence length	1002
RNA-Seq Expression	CSPI06G03970.1
Synteny	CSPI06G03970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCTACGGTGGTGTGAGACGACCTAAGCAGTTCAACTGCTGTTTTCGAAATCCTTGGGCCAAACAACGTTGCTTTTTGGGCCGGCCTTAGAATCTTGCTACTCATTGCAATTCAATTACCGAAGGAAACTCCCCCGTTTTTGGGCCGGCCCAACACAGAATATAAGAATTCCGGCCTCTGATATAAATACTTACCCTTCAGGCGAATTCCTTCTTTCCCTTCCAGCCGAAGCCCTTGGAACTCTTCACTCAAACCCTAGAAACCAAATCTCATGGTGAGTTTCTTTCCTCTTGCCGATTCGATGAACTTGTTCTTCCCTTTGATTCTTCCCTTTGATTCTTCTTTCGTCTTTGGAACTTCCGGTGTACTGATTCTACATGATGTGATATCTTTTGTTGTCTTCGTTTTGAATCTTAGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAACCTGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGGTAAGCTTTTTAAATTTAAGTTCTGCTAGCTGTTATATTATTAGTATGTTGATACTTGTTTAATCTCATCGTTCAGGATCATTAGATAAGATTTAGTCGTTTTAATTTCTTTTTGTTGATAGCATTAAGTGCTCTTTTCGAAGTTTGCAGCGTTGTACTTTTTTTCGATACTGGAATTTGGAATTATCTTTAGTAATTTGATCTTCTTACGTCGTGTAGCATTTCGTTTTTTCGTCATACTGATAACGAGATAGTGACGTTTATATTTGATTAGAATTGGAATGAAAGGACGATAAAAACCAGTTAGGATAGGGACCCTAAACCTTGAAAAATACTATGAGATTTTTTAAGGATGGCGATGTTTATTGAGTTTGAGGAAGAGTTTGATTTTTGGTATTCATTGTAGTATGGCCATTCTTGTTATTTTACATGATCAGTATCACTTGGTTTGCAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCGTCTATCCTTTCTGATAGAATGAGGGTATGTCTTTTTCTTCTTTTTCTATCCATCAATTTCCCAATTTTATTGAATTATTTTGTTGTTCTTGTTTAGAAAAAGTACAAATCTGCTTTTGTTTTCCGATGTGGAATGAGGGTTGTTAACACCTAAAGGGTTTACCAAATGACTGATTGATTTGTTACTAATTGCACCCTCTATAGCAATTTACTAATGGTTTCCTTTGCCATGTGCAATTACCAGGTTAATGGATCGCTAGCAAGAAGAGCAATTAAGGATTTGATGGCTAGAGGTTCCATCAGAATGATATCAGCTCACTCGAGTCAGCAGATCTACACCAGAGCAACCAACACCTAAGGACAACAATTCATGTCACTTATGCCCGAAAGGGTATATATGATATGTAGTTGCCTTTCCATTTTGCAATTCCAAATTTTGTTGAGTGATCAAATGAACTCTAAATGTGACGTTTTTAATTTGTTTGCGTTGCGGGTCTTGACTTGTTTGATGAATTGTGTCACATTAGCTGGTATTTGCCTTTTCTTTTCTACTGCCAAATACTAACAATAATGTTTGTATGTAGAATCTCGTTCTAGATGTAAGTTGGTAAACTAATGTGGCTCTGACATTAGCGTTGTTTGAACAATTCTTAGATTTCGTCTCACTATGTTGAGAAAAACAAGATGATTTCAGGGTCAGGTTTAATCTAAAATCTACTTTCAATATTGATTTTCTTTTGTTTAATTTTTAATAATAAGTC

mRNA sequence

GTCCTACGGTGGTGTGAGACGACCTAAGCAGTTCAACTGCTGTTTTCGAAATCCTTGGGCCAAACAACGTTGCTTTTTGGGCCGGCCTTAGAATCTTGCTACTCATTGCAATTCAATTACCGAAGGAAACTCCCCCGTTTTTGGGCCGGCCCAACACAGAATATAAGAATTCCGGCCTCTGATATAAATACTTACCCTTCAGGCGAATTCCTTCTTTCCCTTCCAGCCGAAGCCCTTGGAACTCTTCACTCAAACCCTAGAAACCAAATCTCATGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAACCTGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCGTCTATCCTTTCTGATAGAATGAGGGTTAATGGATCGCTAGCAAGAAGAGCAATTAAGGATTTGATGGCTAGAGGTTCCATCAGAATGATATCAGCTCACTCGAGTCAGCAGATCTACACCAGAGCAACCAACACCTAAGGACAACAATTCATGTCACTTATGCCCGAAAGGGTATATATGATATGTAGTTGCCTTTCCATTTTGCAATTCCAAATTTTGTTGAGTGATCAAATGAACTCTAAATGTGACGTTTTTAATTTGTTTGCGTTGCGGGTCTTGACTTGTTTGATGAATTGTGTCACATTAGCTGGTATTTGCCTTTTCTTTTCTACTGCCAAATACTAACAATAATGTTTGTATGTAGAATCTCGTTCTAGATGTAAGTTGGTAAACTAATGTGGCTCTGACATTAGCGTTGTTTGAACAATTCTTAGATTTCGTCTCACTATGTTGAGAAAAACAAGATGATTTCAGGGTCAGGTTTAATCTAAAATCTACTTTCAATATTGATTTTCTTTTGTTTAATTTTTAATAATAAGTC

Coding sequence (CDS)

ATGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAACCTGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCGTCTATCCTTTCTGATAGAATGAGGGTTAATGGATCGCTAGCAAGAAGAGCAATTAAGGATTTGATGGCTAGAGGTTCCATCAGAATGATATCAGCTCACTCGAGTCAGCAGATCTACACCAGAGCAACCAACACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT*

Homology

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.5e-47
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-46
Identity = 95/108 (87.96%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-46
Identity = 94/107 (87.85%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN 108
           +TPSILSDR+R+NGSLARRAI++LMA+G+IRM+SAHSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-46
Identity = 94/108 (87.04%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPS+LSDR+R++GSLAR+AI+DLMARGSIRM+SAH+SQQIYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-44
Identity = 90/106 (84.91%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRAT 107
           +TPSILSDR+R+NGSLAR+AI+DLM +G+IRM+S HSSQQI TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy TrEMBL
Match: A0A0A0KB40 (40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_6G045180 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.4e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy TrEMBL
Match: A0A5D3CKR9 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00850 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy TrEMBL
Match: A0A6J1BYI5 (40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy TrEMBL
Match: A0A1S3C4W3 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103496510 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. ExPASy TrEMBL
Match: A0A6J1GMB9 (40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111455806 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. NCBI nr
Match: XP_004140903.1 (40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein Csa_005769 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. NCBI nr
Match: XP_008456601.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S ribosomal protein S25-2-like [Momordica charantia] >TYK11764.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.9e-48
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. NCBI nr
Match: XP_022953196.1 (40S ribosomal protein S25-2 [Cucurbita moschata] >XP_023533034.1 40S ribosomal protein S25-2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533042.1 40S ribosomal protein S25-2 isoform X2 [Cucurbita pepo subsp. pepo] >KAG6602255.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.1 bits (510), Expect = 5.1e-48
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. NCBI nr
Match: XP_022990471.1 (40S ribosomal protein S25-2-like [Cucurbita maxima])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 104/108 (96.30%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 62  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 121

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLAR+AIKDLMARGSIRMISAHSSQ+IYTRATNT
Sbjct: 122 ITPSILSDRMRINGSLARKAIKDLMARGSIRMISAHSSQEIYTRATNT 169

[Close]

BLAST of CSPI06G03970.1 vs. NCBI nr
Match: XP_038885543.1 (40S ribosomal protein S25 [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAH SQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHPSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-48
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-47
Identity = 95/108 (87.96%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of CSPI06G03970.1 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-47
Identity = 94/107 (87.85%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN 108
           +TPSILSDR+R+NGSLARRAI++LMA+G+IRM+SAHSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CSPI06G03970.1 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 184.1 bits (466), Expect = 6.0e-47
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of CSPI06G03970.1 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.6e-46
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107

The following BLAST results are available for this feature:

BLAST of CSPI06G03970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	1.5e-47	89.81	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q9T029	1.7e-46	87.96	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q8GYL5	4.9e-46	87.85	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
P46301	4.9e-46	87.04	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9SIW5	6.0e-44	84.91	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of CSPI06G03970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB40	6.4e-49	100.00	40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_6G045180 PE=3 SV=1	[more]
A0A5D3CKR9	1.9e-48	98.15	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BYI5	1.9e-48	98.15	40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV...	[more]
A0A1S3C4W3	1.9e-48	98.15	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103496510 PE=3 SV=1	[more]
A0A6J1GMB9	2.4e-48	97.22	40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111455806 PE=3 SV=...	[more]

BLAST of CSPI06G03970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140903.1	1.3e-48	100.00	40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein C...	[more]
XP_008456601.1	3.9e-48	98.15	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S r...	[more]
XP_022953196.1	5.1e-48	97.22	40S ribosomal protein S25-2 [Cucurbita moschata] >XP_023533034.1 40S ribosomal p...	[more]
XP_022990471.1	1.1e-47	96.30	40S ribosomal protein S25-2-like [Cucurbita maxima]	[more]
XP_038885543.1	1.5e-47	97.22	40S ribosomal protein S25 [Benincasa hispida]	[more]

BLAST of CSPI06G03970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	1.1e-48	89.81	Ribosomal protein S25 family protein	[more]
AT4G39200.1	1.2e-47	87.96	Ribosomal protein S25 family protein	[more]
AT4G34555.1	3.5e-47	87.85	Ribosomal protein S25 family protein	[more]
AT2G21580.2	6.0e-47	88.89	Ribosomal protein S25 family protein	[more]
AT4G39200.2	6.6e-46	87.04	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.63.20		coord: 21..108 e-value: 8.6E-41 score: 139.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 2..108
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 7..105 e-value: 1.1E-41 score: 141.1
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 2..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G03970	CSPI06G03970	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G03970.1.utr3p1	CSPI06G03970.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G03970.1.cds4	CSPI06G03970.1.cds4	CDS
CSPI06G03970.1.cds3	CSPI06G03970.1.cds3	CDS
CSPI06G03970.1.cds2	CSPI06G03970.1.cds2	CDS
CSPI06G03970.1.cds1	CSPI06G03970.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G03970.1.utr5p1	CSPI06G03970.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G03970.1	CSPI06G03970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome