CSPI05G29620.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI05G29620.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 27805859 .. 27806799 (-)
Sequence length309
RNA-Seq ExpressionCSPI05G29620.1
SyntenyCSPI05G29620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATCGTTTCAGATTTTTTCATCAGATCTCGTCTAAACACACCAAAGCCCTTACTCAGGTGGAGTTGTTTAAGAATTTGAGCTTAAAAAACAATAACCAGGTGTCATCACTTAGTAATGTGCCAAATAGGCCGCAAGATCAAAGGTCATTTTGCTATAAAGTCAGGGTTTTCTCCAGTTTGTGATATTTTGGCCATCTTTTCTTTTTCTTTCGTTCTCCCGTACTTTTACATGATGTTCAAAACAAGATAAGTTTCTTGGAACCTGCAGATCTCTTAGGAATTCTCTGAATCATCTCGGGTAAAAAATTCTTGATTCTGCAAACAAATTGGAGTATTCAGCTTATTTTTGCATAAATTCCAGAGTATAATCACCCGGAGGAAGCCATTGAATTGAGGGTTCCTTGAGGTAAATTCTTGCGCCATCTGCACCTTCTCTCTTTGCTTGCGTGAAAAGAAAACAATCAATAGGGGTTGGTCTTGGAAAACAGTCTTTCTTCAAATTCCTCCATATTTTGCTTATTTCTGACGTGTATTTCCATGTCCTGCACGCATCAAGAATATATATGTTATACAGATACAGGCTTTGAAATTCTAGTTCTGACTTGATTTTGAGTCTATCTGTAAACCCTTGGTAATAAACTCTTATTTGCATTTCCCATTCTCTTTTTTCAATGTGTAAAGCTTGTACAGGAGAATGAAGCAGCTAGGTAGGTATGGCGCAAAGAAGCTCAATCAAGTCAGCAGTTCTGTGGGTTCGCATTTGCTCTTGCTATTCAAAGTATGTTTTACATTTTCACCGTCCTCCAGTTTTTTTGAATCTGTTTGTTGCAGTTTCTTAATGTGTCCTTAACTTTTTGTATAAGGTCAAAACTGGCTTACAGGAACTAAAGAAAATGCCTCATGTTTACAAAGGGCAAGCTTTTCATTTCATTTCA

mRNA sequence

ATGGTGAATCGTTTCAGATTTTTTCATCAGATCTCGTCTAAACACACCAAAGCCCTTACTCAGGTGGAGTTGTTTAAGAATTTGAGCTTAAAAAACAATAACCAGGTGTCATCACTTAGTAATGTGCCAAATAGGCCGCAAGATCAAAGGAGAATGAAGCAGCTAGGTAGGTATGGCGCAAAGAAGCTCAATCAAGTCAGCAGTTCTGTGGGTTCGCATTTGCTCTTGCTATTCAAAGTCAAAACTGGCTTACAGGAACTAAAGAAAATGCCTCATGTTTACAAAGGGCAAGCTTTTCATTTCATTTCA

Coding sequence (CDS)

ATGGTGAATCGTTTCAGATTTTTTCATCAGATCTCGTCTAAACACACCAAAGCCCTTACTCAGGTGGAGTTGTTTAAGAATTTGAGCTTAAAAAACAATAACCAGGTGTCATCACTTAGTAATGTGCCAAATAGGCCGCAAGATCAAAGGAGAATGAAGCAGCTAGGTAGGTATGGCGCAAAGAAGCTCAATCAAGTCAGCAGTTCTGTGGGTTCGCATTTGCTCTTGCTATTCAAAGTCAAAACTGGCTTACAGGAACTAAAGAAAATGCCTCATGTTTACAAAGGGCAAGCTTTTCATTTCATTTCA

Protein sequence

MVNRFRFFHQISSKHTKALTQVELFKNLSLKNNNQVSSLSNVPNRPQDQRRMKQLGRYGAKKLNQVSSSVGSHLLLLFKVKTGLQELKKMPHVYKGQAFHFIS
Homology
[Close]
BLAST of CSPI05G29620.1 vs. NCBI nr
Match: KAE8648951.1 (hypothetical protein Csa_008827 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 5.8e-46
Identity = 102/106 (96.23%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 1   MVNRFRFFHQISSKHTKALTQVELFKNLSLKNNNQVSSLSNVPNRPQDQ---RRMKQLGR 60
           MVNRFRFFHQISSKHTKALTQVELFK LSLKNNNQVSSLSNVPNRPQDQ   RRMKQLGR
Sbjct: 1   MVNRFRFFHQISSKHTKALTQVELFKKLSLKNNNQVSSLSNVPNRPQDQSLYRRMKQLGR 60

Query: 61  YGAKKLNQVSSSVGSHLLLLFKVKTGLQELKKMPHVYKGQAFHFIS 104
           YGAKKLNQVSSSVGSHLLLLFKVKTGLQELKKMPHVYKGQAFHFIS
Sbjct: 61  YGAKKLNQVSSSVGSHLLLLFKVKTGLQELKKMPHVYKGQAFHFIS 106

The following BLAST results are available for this feature:
BLAST of CSPI05G29620.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G29620.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G29620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648951.15.8e-4696.23hypothetical protein Csa_008827 [Cucumis sativus][more]
BLAST of CSPI05G29620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G29620CSPI05G29620gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G29620.mrna.cds.3CSPI05G29620.mrna.cds.3CDS
CSPI05G29620.mrna.cds.2CSPI05G29620.mrna.cds.2CDS
CSPI05G29620.mrna.cds.1CSPI05G29620.mrna.cds.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G29620.1CSPI05G29620.1-proteinpolypeptide