CSPI05G28540.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI05G28540.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 26908366 .. 26908569 (-)
Sequence length204
RNA-Seq ExpressionCSPI05G28540.1
SyntenyCSPI05G28540.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACGGTGCCAAAGGTACAGCAACAATGGCGATTGAACAGAGACAACGATGACGTGTCGTCGATTGAATGGAGGGCGATCGTGCGTGTGGCAGTAGTGCTTGAGCAAAAGAGACGGAATGTGGGTATCACATCCGTTGGTGGGATATTCACACATGCAGATGAATGGCCATTGTTAAAAAATGGTAGAATATTTATTTAA

mRNA sequence

ATGACGACGGTGCCAAAGGTACAGCAACAATGGCGATTGAACAGAGACAACGATGACGTGTCGTCGATTGAATGGAGGGCGATCGTGCGTGTGGCAGTAGTGCTTGAGCAAAAGAGACGGAATGTGGGTATCACATCCGTTGGTGGGATATTCACACATGCAGATGAATGGCCATTGTTAAAAAATGGTAGAATATTTATTTAA

Coding sequence (CDS)

ATGACGACGGTGCCAAAGGTACAGCAACAATGGCGATTGAACAGAGACAACGATGACGTGTCGTCGATTGAATGGAGGGCGATCGTGCGTGTGGCAGTAGTGCTTGAGCAAAAGAGACGGAATGTGGGTATCACATCCGTTGGTGGGATATTCACACATGCAGATGAATGGCCATTGTTAAAAAATGGTAGAATATTTATTTAA

Protein sequence

MTTVPKVQQQWRLNRDNDDVSSIEWRAIVRVAVVLEQKRRNVGITSVGGIFTHADEWPLLKNGRIFI*
Homology
[Close]
BLAST of CSPI05G28540.1 vs. ExPASy TrEMBL
Match: A0A0A0KX80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633140 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MTTVPKVQQQWRLNRDNDDVSSIEWRAIVRVAVVLEQKRRNVGITSVGGIFTHADEWPLL 60
          MTTVPKVQQQWRLNRDNDDVSSIEWRAIVRVAVVLEQKR NVGITSVGGIFTHADEWPLL
Sbjct: 1  MTTVPKVQQQWRLNRDNDDVSSIEWRAIVRVAVVLEQKRPNVGITSVGGIFTHADEWPLL 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of CSPI05G28540.1 vs. NCBI nr
Match: KGN52416.1 (hypothetical protein Csa_008979 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 4.4e-26
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MTTVPKVQQQWRLNRDNDDVSSIEWRAIVRVAVVLEQKRRNVGITSVGGIFTHADEWPLL 60
          MTTVPKVQQQWRLNRDNDDVSSIEWRAIVRVAVVLEQKR NVGITSVGGIFTHADEWPLL
Sbjct: 1  MTTVPKVQQQWRLNRDNDDVSSIEWRAIVRVAVVLEQKRPNVGITSVGGIFTHADEWPLL 60

Query: 61 K 62
          K
Sbjct: 61 K 61

The following BLAST results are available for this feature:
BLAST of CSPI05G28540.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G28540.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KX802.1e-2698.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633140 PE=4 SV=1[more]
BLAST of CSPI05G28540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52416.14.4e-2698.36hypothetical protein Csa_008979 [Cucumis sativus][more]
BLAST of CSPI05G28540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G28540CSPI05G28540gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G28540.1.cds1CSPI05G28540.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G28540.1CSPI05G28540.1-proteinpolypeptide