CSPI05G22560.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI05G22560.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	axial regulator YABBY 4
Location	Chr5: 22969397 .. 22970751 (+)
Sequence length	513
RNA-Seq Expression	CSPI05G22560.1
Synteny	CSPI05G22560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGACCGTGACGTGTGGCCATTGCTCGAGTCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTGCATTTTCTGTCTTCTTTATCTCACAATGTGGTATTTGGAAATTTTTTGTTCTTAAAATTTTGATTCAATACTCATAATTTTATATGCTGTTATAGATAACATTTCTCTTTTTTTCCTCTTTGTTCGTTCAGCCCAAAGAAACTTATAGAGAAATGAATTCAGGGAAGTTTTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGACGACTTGATTCCTGTGACAACTCCTTTTGTAAACAAACGTAAGAACATTGACAAACAATTAGACTTCCAACATTATTAAATGAACAAATCTGAAAGTTCTAACTTAGATTATATCTTTTCTTTTGAATGATCATTTGAAGCTCCTGAGAGACGACAGCGCGCCCCATCCGCATACAACTGCTTCATCAAGTAACTTATCGAACTTTCTACTGATTTTGTAATGGATGTTTTAAAAGAATACTTTCGAATGAAAGTACATCAAGAACCAGTTTTAAGAGTGGTTCTCCTAAAACAACTTTTCAATCTAATATGTTTGTGTTTGGGACAGAGATGAAATAAGAAGGCTCAAAACTCAAAATCCTGAAATGACTCACAAAGAAGCCTTTAGAACAGCAGCAAAAAACGTAAGTAACAGTCACGATGTGTATAGATTAACTTATAAGTGTTACAAACATGTCCTTAATGATGATCTAATTAATATGTTTACTGAATCTTAAACTGATTTTGATTTTTCAGTGGGCAAATTTCCCTCCAATCCAAGAAAAGGATGACAAGGAGAAGTGTAATCAAATTGAGGAAAATGGGAGTTGGAACACTCAAATTCCTGAGGTAAAAATGCAAACTTTAGAACAAAAAGTTATGATATTCAATTAAAACTTCAAACCCATTACACCAAATGGAAAAAGTTTCATGAATCTTTATAAGTAATTACTCATAACAATATTTGAGAAGATGTCCTTTTAGACAAATTTATGAGACTGTCATTAAAGGAGTAAGAGCATTGAATGCAGAACTTATAATATAGAAGAAGTTGGGGAGTTTTTATGGCAAATTTAAGCAACTGATTTAGTGGTATACATCATAATGAGTTTATGTTTTTGAAAAAAATTTCAGGTTCATAAGGAAGGCATTCATTTTTTGACATAACTCACCATTTCAGTGAAGCTATAAGAAGGTAGGAGAATGCTTTTAGTTTCTGCTTTGTTACTTCTTTTAGGAAAAAAGGGTTCAAAAATTCAGTGTTCTTAAAAAGGATAGATGCCATTGGGAATGA

mRNA sequence

ATGGCGGTGACCGTGACGTGTGGCCATTGCTCGAGTCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTGCATTTTCTGTCTTCTTTATCTCACAATGTGCCCAAAGAAACTTATAGAGAAATGAATTCAGGGAAGTTTTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGACGACTTGATTCCTGTGACAACTCCTTTTGTAAACAAACCTCCTGAGAGACGACAGCGCGCCCCATCCGCATACAACTGCTTCATCAAAGATGAAATAAGAAGGCTCAAAACTCAAAATCCTGAAATGACTCACAAAGAAGCCTTTAGAACAGCAGCAAAAAACTGGGCAAATTTCCCTCCAATCCAAGAAAAGGATGACAAGGAGAAGTGTAATCAAATTGAGGAAAATGGGAGTTGGAACACTCAAATTCCTGAGGAAAAAAGGGTTCAAAAATTCAGTGTTCTTAAAAAGGATAGATGCCATTGGGAATGA

Coding sequence (CDS)

ATGGCGGTGACCGTGACGTGTGGCCATTGCTCGAGTCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTGCATTTTCTGTCTTCTTTATCTCACAATGTGCCCAAAGAAACTTATAGAGAAATGAATTCAGGGAAGTTTTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGACGACTTGATTCCTGTGACAACTCCTTTTGTAAACAAACCTCCTGAGAGACGACAGCGCGCCCCATCCGCATACAACTGCTTCATCAAAGATGAAATAAGAAGGCTCAAAACTCAAAATCCTGAAATGACTCACAAAGAAGCCTTTAGAACAGCAGCAAAAAACTGGGCAAATTTCCCTCCAATCCAAGAAAAGGATGACAAGGAGAAGTGTAATCAAATTGAGGAAAATGGGAGTTGGAACACTCAAATTCCTGAGGAAAAAAGGGTTCAAAAATTCAGTGTTCTTAAAAAGGATAGATGCCATTGGGAATGA

Protein sequence

MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNWANFPPIQEKDDKEKCNQIEENGSWNTQIPEEKRVQKFSVLKKDRCHWE*

Homology

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy Swiss-Prot
Match: Q9LDT3 (Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 6.3e-32
Identity = 87/187 (46.52%), Postives = 110/187 (58.82%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYRE---MNSGKFFDSFKRSN 60
           M VTV CGHC+SLLSVN+MKA+ +PLH L+SLSH    ET +E      G   +++K + 
Sbjct: 44  MVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH--LDETGKEEVAATDGVEEEAWKVNQ 103

Query: 61  LK-------FSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMT 120
            K        S  + ED+ +      VNKPPE+RQRAPSAYNCFIK+EIRRLK QNP M 
Sbjct: 104 EKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMA 163

Query: 121 HKEAFRTAAKNWANFPPIQEK----------DDKE---KCNQIEENGSWNTQIPEEKRVQ 165
           HKEAF  AAKNWA+FPP   K          +D      CN  E++   N     E++ Q
Sbjct: 164 HKEAFSLAAKNWAHFPPAHNKRAASDQCFCEEDNNAILPCNVFEDHEESNNGF-RERKAQ 223

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy Swiss-Prot
Match: A2PZN8 (Protein YABBY 7 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB7 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-21
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFSE 62
           V V CGHCS +LS     A  +P   +S+     P+E       G++ D     + +  +
Sbjct: 41  VAVQCGHCSGILS-----AVNLPPSPVSASIELTPQELDAGPPPGEYSDESSGDDREGRD 100

Query: 63  YEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKNW 122
            E +D   P      NKPP R+QR PSAYNCF+K+EI+R+K+  P +THK+AF TAAKNW
Sbjct: 101 AE-DDAPAPAAAAVANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNW 160

Query: 123 ANFPPIQEKDDKEKC 138
           A+ P IQ+K  ++ C
Sbjct: 161 AHLPRIQQKRGRDSC 169

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-21
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVN---MMKATLVPLHFLSSLS-HNVP-KETYREMNSGKFFDSFKRSN 62
           VTV CGHC+SLLSVN   +++A     H   +L  HN+  +E Y E  S      + R  
Sbjct: 37  VTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSS---SRYGRVP 96

Query: 63  LKFSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRT 122
           + FS+ + E  L         +PPE+RQR PSAYN FIK+EIRR+K  NP+++H+EAF T
Sbjct: 97  MMFSKNDTEHMLHV-------RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFST 156

Query: 123 AAKNWANFPPI 129
           AAKNWA+FP I
Sbjct: 157 AAKNWAHFPNI 157

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-20
Identity = 59/127 (46.46%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVNMMKATLVPLHFLSSLSH-NVPKETYREMNSGKFFDSFKRSNLKFS 62
           VTV CGHC++L SVNM  A       L SLS  N     Y     G    S  +   + S
Sbjct: 36  VTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRIS 95

Query: 63  EYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKN 122
              + +  I      VN+PPE+RQR PSAYN FIK+EI+R+K  NP+++H+EAF TAAKN
Sbjct: 96  TRTITEQRI------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 149

Query: 123 WANFPPI 129
           WA+FP I
Sbjct: 156 WAHFPHI 149

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-19
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVNM-MKATLVPLHFLSSLSHNV--------PKETYREMNS-GKFFDS 62
           VTV CGHCS+LLSV + M+A L+P   +S+L H+         P     EM S G+  + 
Sbjct: 50  VTVRCGHCSNLLSVTVSMRALLLP--SVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINM 109

Query: 63  FKRSNLKFSEYEVEDDLIPVT--------------TPFVNKPPERRQRAPSAYNCFIKDE 122
               +   S +   + L+  T               P  N+PPE+RQR PSAYN FIK+E
Sbjct: 110 NMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEE 169

Query: 123 IRRLKTQNPEMTHKEAFRTAAKNWANFPPI 129
           I+R+K  NP+++H+EAF  AAKNWA+FP I
Sbjct: 170 IQRIKAGNPDISHREAFSAAAKNWAHFPHI 197

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy TrEMBL
Match: A0A0A0KTN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600930 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.3e-82
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF
Sbjct: 34  MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 93

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK
Sbjct: 94  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 153

Query: 121 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPEEK 155
           NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE K
Sbjct: 154 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPEVK 187

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy TrEMBL
Match: A0A5A7SSV9 (Axial regulator YABBY 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001120 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRS LKF
Sbjct: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSKLKF 60

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVE+DLIP TTPFVNKPPE+RQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK
Sbjct: 61  SEYEVEEDLIPATTPFVNKPPEKRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120

Query: 121 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           NWANFPPIQEKDDKEKCNQ+EENGSWNTQIPE
Sbjct: 121 NWANFPPIQEKDDKEKCNQVEENGSWNTQIPE 152

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy TrEMBL
Match: A0A1S3BDZ8 (axial regulator YABBY 4 OS=Cucumis melo OX=3656 GN=LOC103488996 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRS LKF
Sbjct: 34  MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSKLKF 93

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVE+DLIP TTPFVNKPPE+RQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK
Sbjct: 94  SEYEVEEDLIPATTPFVNKPPEKRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 153

Query: 121 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           NWANFPPIQEKDDKEKCNQ+EENGSWNTQIPE
Sbjct: 154 NWANFPPIQEKDDKEKCNQVEENGSWNTQIPE 185

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy TrEMBL
Match: A0A6J1DDE4 (axial regulator YABBY 4-like OS=Momordica charantia OX=3673 GN=LOC111019075 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64
Identity = 126/153 (82.35%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSS++ NVPKE+  EMNSGKF DSFK SNLKF
Sbjct: 34  MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSIARNVPKESGGEMNSGKFLDSFKASNLKF 93

Query: 61  SEYE-VEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAA 120
           SEYE  E  LIPVT P VNKPP +RQRAPSAYNCFIK+EIRRLK QNP+M+HKEAFRTAA
Sbjct: 94  SEYEDDEGGLIPVTPPVVNKPPAKRQRAPSAYNCFIKNEIRRLKAQNPQMSHKEAFRTAA 153

Query: 121 KNWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           KNWANFPPIQ+K+D E CNQIEENG W+TQ+PE
Sbjct: 154 KNWANFPPIQQKEDAESCNQIEENGVWDTQMPE 186

[Close]

BLAST of CSPI05G22560.1 vs. ExPASy TrEMBL
Match: A0A6J1JCH4 (axial regulator YABBY 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483786 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 123/168 (73.21%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           M VTVTCGHCSSLLSVNM++ATLVPLHFLSSLS N+PKET REM+SGK FDSF RSNLKF
Sbjct: 34  MEVTVTCGHCSSLLSVNMLRATLVPLHFLSSLSRNLPKETCREMSSGKLFDSFIRSNLKF 93

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVE+ LIPVT P VNKPPE+RQR PSAYNCFIKDEIRRLK +NP+MTHKEAFRTAAK
Sbjct: 94  SEYEVEEGLIPVTPPSVNKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTHKEAFRTAAK 153

Query: 121 NWANFPP-IQEKDDKEKCNQIEENGSWNTQIPEEKRVQKFSVLKKDRC 168
           NWANFPP IQ+K+D +           NTQIPE      F V K  +C
Sbjct: 154 NWANFPPTIQQKEDPQ-----------NTQIPE------FQVEKNGKC 184

[Close]

BLAST of CSPI05G22560.1 vs. NCBI nr
Match: KAE8648718.1 (hypothetical protein Csa_008048, partial [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF
Sbjct: 53  MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 112

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK
Sbjct: 113 SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 172

Query: 121 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE
Sbjct: 173 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 204

[Close]

BLAST of CSPI05G22560.1 vs. NCBI nr
Match: XP_004135480.2 (axial regulator YABBY 4 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF
Sbjct: 75  MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 134

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK
Sbjct: 135 SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 194

Query: 121 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE
Sbjct: 195 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 226

[Close]

BLAST of CSPI05G22560.1 vs. NCBI nr
Match: XP_008446193.1 (PREDICTED: axial regulator YABBY 4 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 2.3e-79
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRS LKF
Sbjct: 34  MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSKLKF 93

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVE+DLIP TTPFVNKPPE+RQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK
Sbjct: 94  SEYEVEEDLIPATTPFVNKPPEKRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 153

Query: 121 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           NWANFPPIQEKDDKEKCNQ+EENGSWNTQIPE
Sbjct: 154 NWANFPPIQEKDDKEKCNQVEENGSWNTQIPE 185

[Close]

BLAST of CSPI05G22560.1 vs. NCBI nr
Match: KAA0034304.1 (axial regulator YABBY 4 [Cucumis melo var. makuwa] >TYK15615.1 axial regulator YABBY 4 [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 2.3e-79
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKF 60
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRS LKF
Sbjct: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSKLKF 60

Query: 61  SEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120
           SEYEVE+DLIP TTPFVNKPPE+RQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK
Sbjct: 61  SEYEVEEDLIPATTPFVNKPPEKRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120

Query: 121 NWANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           NWANFPPIQEKDDKEKCNQ+EENGSWNTQIPE
Sbjct: 121 NWANFPPIQEKDDKEKCNQVEENGSWNTQIPE 152

[Close]

BLAST of CSPI05G22560.1 vs. NCBI nr
Match: XP_038893210.1 (axial regulator YABBY 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 133/151 (88.08%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 2   AVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSNLKFS 61
           AVTVTCGHCSSLLSVNMMKA LVPLHFLSSLS NVPKE  REMNSGKFFDSFKRS LKFS
Sbjct: 35  AVTVTCGHCSSLLSVNMMKANLVPLHFLSSLSCNVPKEACREMNSGKFFDSFKRSKLKFS 94

Query: 62  EYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKN 121
           EYEVE+ LIPVT PFVNKPPE+RQRAPSAYNCFIKDEIRRLK QNPEMTHKEAFRTAAKN
Sbjct: 95  EYEVEEGLIPVTPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTHKEAFRTAAKN 154

Query: 122 WANFPPIQEKDDKEKCNQIEENGSWNTQIPE 153
           WANFPPI EK+D   CN  EENG+WNTQIPE
Sbjct: 155 WANFPPIHEKEDTMGCN--EENGTWNTQIPE 183

[Close]

BLAST of CSPI05G22560.1 vs. TAIR 10
Match: AT1G23420.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-33
Identity = 87/187 (46.52%), Postives = 110/187 (58.82%), Query Frame = 0


Query: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYRE---MNSGKFFDSFKRSN 60
           M VTV CGHC+SLLSVN+MKA+ +PLH L+SLSH    ET +E      G   +++K + 
Sbjct: 44  MVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH--LDETGKEEVAATDGVEEEAWKVNQ 103

Query: 61  LK-------FSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMT 120
            K        S  + ED+ +      VNKPPE+RQRAPSAYNCFIK+EIRRLK QNP M 
Sbjct: 104 EKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMA 163

Query: 121 HKEAFRTAAKNWANFPPIQEK----------DDKE---KCNQIEENGSWNTQIPEEKRVQ 165
           HKEAF  AAKNWA+FPP   K          +D      CN  E++   N     E++ Q
Sbjct: 164 HKEAFSLAAKNWAHFPPAHNKRAASDQCFCEEDNNAILPCNVFEDHEESNNGF-RERKAQ 223

[Close]

BLAST of CSPI05G22560.1 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-21
Identity = 59/127 (46.46%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVNMMKATLVPLHFLSSLSH-NVPKETYREMNSGKFFDSFKRSNLKFS 62
           VTV CGHC++L SVNM  A       L SLS  N     Y     G    S  +   + S
Sbjct: 36  VTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRIS 95

Query: 63  EYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKN 122
              + +  I      VN+PPE+RQR PSAYN FIK+EI+R+K  NP+++H+EAF TAAKN
Sbjct: 96  TRTITEQRI------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 149

Query: 123 WANFPPI 129
           WA+FP I
Sbjct: 156 WAHFPHI 149

[Close]

BLAST of CSPI05G22560.1 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-21
Identity = 59/127 (46.46%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVNMMKATLVPLHFLSSLSH-NVPKETYREMNSGKFFDSFKRSNLKFS 62
           VTV CGHC++L SVNM  A       L SLS  N     Y     G    S  +   + S
Sbjct: 36  VTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRIS 95

Query: 63  EYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAKN 122
              + +  I      VN+PPE+RQR PSAYN FIK+EI+R+K  NP+++H+EAF TAAKN
Sbjct: 96  TRTITEQRI------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 149

Query: 123 WANFPPI 129
           WA+FP I
Sbjct: 156 WAHFPHI 149

[Close]

BLAST of CSPI05G22560.1 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-20
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVNM-MKATLVPLHFLSSLSHNV--------PKETYREMNS-GKFFDS 62
           VTV CGHCS+LLSV + M+A L+P   +S+L H+         P     EM S G+  + 
Sbjct: 50  VTVRCGHCSNLLSVTVSMRALLLP--SVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINM 109

Query: 63  FKRSNLKFSEYEVEDDLIPVT--------------TPFVNKPPERRQRAPSAYNCFIKDE 122
               +   S +   + L+  T               P  N+PPE+RQR PSAYN FIK+E
Sbjct: 110 NMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEE 169

Query: 123 IRRLKTQNPEMTHKEAFRTAAKNWANFPPI 129
           I+R+K  NP+++H+EAF  AAKNWA+FP I
Sbjct: 170 IQRIKAGNPDISHREAFSAAAKNWAHFPHI 197

[Close]

BLAST of CSPI05G22560.1 vs. TAIR 10
Match: AT4G00180.2 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-20
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 3   VTVTCGHCSSLLSVNM-MKATLVPLHFLSSLSHNV--------PKETYREMNS-GKFFDS 62
           VTV CGHCS+LLSV + M+A L+P   +S+L H+         P     EM S G+  + 
Sbjct: 19  VTVRCGHCSNLLSVTVSMRALLLP--SVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINM 78

Query: 63  FKRSNLKFSEYEVEDDLIPVT--------------TPFVNKPPERRQRAPSAYNCFIKDE 122
               +   S +   + L+  T               P  N+PPE+RQR PSAYN FIK+E
Sbjct: 79  NMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEE 138

Query: 123 IRRLKTQNPEMTHKEAFRTAAKNWANFPPI 129
           I+R+K  NP+++H+EAF  AAKNWA+FP I
Sbjct: 139 IQRIKAGNPDISHREAFSAAAKNWAHFPHI 166

The following BLAST results are available for this feature:

BLAST of CSPI05G22560.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDT3	6.3e-32	46.52	Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2	[more]
A2PZN8	2.3e-21	41.48	Protein YABBY 7 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB7 PE=2 SV=1	[more]
Q10FZ7	8.6e-21	47.33	Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1	[more]
Q8GW46	4.3e-20	46.46	Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1	[more]
Q9XFB1	2.8e-19	41.33	Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1	[more]

BLAST of CSPI05G22560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTN4	5.3e-82	99.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600930 PE=3 SV=1	[more]
A0A5A7SSV9	1.1e-79	96.71	Axial regulator YABBY 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BDZ8	1.1e-79	96.71	axial regulator YABBY 4 OS=Cucumis melo OX=3656 GN=LOC103488996 PE=3 SV=1	[more]
A0A6J1DDE4	2.2e-64	82.35	axial regulator YABBY 4-like OS=Momordica charantia OX=3673 GN=LOC111019075 PE=3...	[more]
A0A6J1JCH4	1.4e-58	73.21	axial regulator YABBY 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483786 P...	[more]

BLAST of CSPI05G22560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648718.1	1.9e-81	100.00	hypothetical protein Csa_008048, partial [Cucumis sativus]	[more]
XP_004135480.2	1.9e-81	100.00	axial regulator YABBY 4 [Cucumis sativus]	[more]
XP_008446193.1	2.3e-79	96.71	PREDICTED: axial regulator YABBY 4 [Cucumis melo]	[more]
KAA0034304.1	2.3e-79	96.71	axial regulator YABBY 4 [Cucumis melo var. makuwa] >TYK15615.1 axial regulator Y...	[more]
XP_038893210.1	1.2e-67	88.08	axial regulator YABBY 4 isoform X2 [Benincasa hispida]	[more]

BLAST of CSPI05G22560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23420.1	4.5e-33	46.52	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	3.0e-21	46.46	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	3.0e-21	46.46	plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	2.0e-20	41.33	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.2	2.0e-20	41.33	Plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 2..129 e-value: 1.1E-41 score: 143.2
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 1..149
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 76..160 e-value: 4.4E-8 score: 35.3
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 72..127
None	No IPR available	PANTHER	PTHR31675:SF8	AXIAL REGULATOR YABBY 4	coord: 1..149
None	No IPR available	CDD	cd00084	HMG-box	coord: 86..136 e-value: 7.70275E-4 score: 34.5168

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G22560	CSPI05G22560	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G22560.1.cds1	CSPI05G22560.1.cds1	CDS
CSPI05G22560.1.cds2	CSPI05G22560.1.cds2	CDS
CSPI05G22560.1.cds3	CSPI05G22560.1.cds3	CDS
CSPI05G22560.1.cds4	CSPI05G22560.1.cds4	CDS
CSPI05G22560.1.cds5	CSPI05G22560.1.cds5	CDS
CSPI05G22560.1.cds6	CSPI05G22560.1.cds6	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G22560.1	CSPI05G22560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development