CSPI05G15610.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI05G15610.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	Chr5: 16614516 .. 16615101 (+)
Sequence length	483
RNA-Seq Expression	CSPI05G15610.1
Synteny	CSPI05G15610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATTCAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGGTAAGTGTGTGGATATAAAGACTTATCGAGGTATGATCGGATCTTTACTTTATTTGACCGCTAGTAGACCCGATATCATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTTTACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAATATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA

mRNA sequence

ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATTCAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTTTACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAATATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA

Coding sequence (CDS)

ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATTCAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTTTACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAATATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA

Protein sequence

MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEKDFNLVLKNHISMPLKGYLNICLELLMLDYGILEMLSLIWYDIPIRILPVVYLTVKVLVGLANFLVVLWYLGLVKSKIWLRYPLPKQNILRLLVVVHKFFG*

Homology

[Close]

BLAST of CSPI05G15610.1 vs. ExPASy TrEMBL
Match: A0A438DRR9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_106211 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FF+GLQIKQLK+G FI++ KY RDLLK+F + E K  KTPMS++ KLDKDEK
Sbjct: 34  MSMMGELNFFIGLQIKQLKEGTFINKAKYIRDLLKRFNIEEAKTMKTPMSSSIKLDKDEK 93

Query: 61  DFNLVLKN 69
           DFNL+LKN
Sbjct: 94  DFNLILKN 101

[Close]

BLAST of CSPI05G15610.1 vs. ExPASy TrEMBL
Match: A0A438IHN9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_037733 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FFLGLQIKQLK G FI++ KY RDLLK+F + E K  KTPMS++ KLD+DEK
Sbjct: 47  MSMMGELNFFLGLQIKQLKKGTFINKAKYIRDLLKRFNIEEAKTMKTPMSSSIKLDEDEK 106

Query: 61  DFNLVLKN 69
           DFNLVLKN
Sbjct: 107 DFNLVLKN 114

[Close]

BLAST of CSPI05G15610.1 vs. ExPASy TrEMBL
Match: A0A438J1E6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_016560 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.7e-18
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
          MSMMGEL+FFLGLQIKQLK+G FI+Q KY +DLLK+F + E K  KTPMS++ KLD +EK
Sbjct: 7  MSMMGELNFFLGLQIKQLKEGTFINQAKYIKDLLKRFNMEEAKTMKTPMSSSIKLDMNEK 66

Query: 61 DFNLVLKNHI 71
          DFNLVLKN I
Sbjct: 67 DFNLVLKNLI 76

[Close]

BLAST of CSPI05G15610.1 vs. ExPASy TrEMBL
Match: A0A438HUF5 (CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044410 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSM+GEL+FFL LQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KL+KDEK
Sbjct: 351 MSMIGELNFFLRLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMSSSIKLNKDEK 410

Query: 61  DFNLVLKNHI 71
           DFNLVLKN I
Sbjct: 411 DFNLVLKNLI 420

[Close]

BLAST of CSPI05G15610.1 vs. ExPASy TrEMBL
Match: A0A6A3AQW2 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110387pilonHSYRG00804 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.6e-17
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGELSFFLGLQIKQ KD IFI+Q KY +D+LKKF L  GK   TPMS++TKLD DE 
Sbjct: 411 MSMMGELSFFLGLQIKQRKDDIFINQAKYIKDMLKKFGLENGKPHNTPMSSSTKLDIDEG 470

Query: 61  DFNLVLKNHI 71
           DFN  L+NH+
Sbjct: 471 DFNHALRNHL 480

[Close]

BLAST of CSPI05G15610.1 vs. NCBI nr
Match: WP_217833186.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-20
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
          MSMMGELSFFLG+QIKQLKD IFISQEKYTRDLLK+FK NEGK+AKTPMSTTTKLDKDEK
Sbjct: 27 MSMMGELSFFLGIQIKQLKDDIFISQEKYTRDLLKRFKFNEGKIAKTPMSTTTKLDKDEK 86

[Close]

BLAST of CSPI05G15610.1 vs. NCBI nr
Match: RVW38187.1 (hypothetical protein CK203_106211 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-18
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FF+GLQIKQLK+G FI++ KY RDLLK+F + E K  KTPMS++ KLDKDEK
Sbjct: 34  MSMMGELNFFIGLQIKQLKEGTFINKAKYIRDLLKRFNIEEAKTMKTPMSSSIKLDKDEK 93

Query: 61  DFNLVLKN 69
           DFNL+LKN
Sbjct: 94  DFNLILKN 101

[Close]

BLAST of CSPI05G15610.1 vs. NCBI nr
Match: RVW96197.1 (hypothetical protein CK203_037733 [Vitis vinifera])

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-18
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FFLGLQIKQLK G FI++ KY RDLLK+F + E K  KTPMS++ KLD+DEK
Sbjct: 47  MSMMGELNFFLGLQIKQLKKGTFINKAKYIRDLLKRFNIEEAKTMKTPMSSSIKLDEDEK 106

Query: 61  DFNLVLKN 69
           DFNLVLKN
Sbjct: 107 DFNLVLKN 114

[Close]

BLAST of CSPI05G15610.1 vs. NCBI nr
Match: RVX02732.1 (hypothetical protein CK203_016560 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
          MSMMGEL+FFLGLQIKQLK+G FI+Q KY +DLLK+F + E K  KTPMS++ KLD +EK
Sbjct: 7  MSMMGELNFFLGLQIKQLKEGTFINQAKYIKDLLKRFNMEEAKTMKTPMSSSIKLDMNEK 66

Query: 61 DFNLVLKNHI 71
          DFNLVLKN I
Sbjct: 67 DFNLVLKNLI 76

[Close]

BLAST of CSPI05G15610.1 vs. NCBI nr
Match: RVW88079.1 (hypothetical protein CK203_044410 [Vitis vinifera])

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-17
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSM+GEL+FFL LQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KL+KDEK
Sbjct: 351 MSMIGELNFFLRLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMSSSIKLNKDEK 410

Query: 61  DFNLVLKNHI 71
           DFNLVLKN I
Sbjct: 411 DFNLVLKNLI 420

The following BLAST results are available for this feature:

BLAST of CSPI05G15610.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G15610.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438DRR9	1.3e-18	72.06	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A438IHN9	3.9e-18	73.53	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A438J1E6	6.7e-18	71.43	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A438HUF5	1.5e-17	71.43	CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044410 P...	[more]
A0A6A3AQW2	9.6e-17	70.00	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110387pilon...	[more]

BLAST of CSPI05G15610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833186.1	1.0e-20	91.67	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
RVW38187.1	2.8e-18	72.06	hypothetical protein CK203_106211 [Vitis vinifera]	[more]
RVW96197.1	8.1e-18	73.53	hypothetical protein CK203_037733 [Vitis vinifera]	[more]
RVX02732.1	1.4e-17	71.43	hypothetical protein CK203_016560 [Vitis vinifera]	[more]
RVW88079.1	3.1e-17	71.43	hypothetical protein CK203_044410 [Vitis vinifera]	[more]

BLAST of CSPI05G15610.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 5..94
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 5..94

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G15610	CSPI05G15610	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G15610.1.cds1	CSPI05G15610.1.cds1	CDS
CSPI05G15610.1.cds2	CSPI05G15610.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G15610.1	CSPI05G15610.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding