CSPI05G00940.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI05G00940.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L2, chloroplastic
LocationChr5: 1233486 .. 1233743 (+)
Sequence length258
RNA-Seq ExpressionCSPI05G00940.1
SyntenyCSPI05G00940.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAATTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATTATAA

mRNA sequence

GAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAATTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATTATAA

Coding sequence (CDS)

ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAATTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATTATAA

Protein sequence

MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKL*
Homology
[Close]
BLAST of CSPI05G00940.1 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 193 VGNAGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 194 VGNAGVNQKSLGRAGSK 210

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 193 VGNAGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy Swiss-Prot
Match: A4GYV2 (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-34
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 193 VGNAGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy Swiss-Prot
Match: Q8S8V3 (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.0e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGN GVNQKSLGRAGSK
Sbjct: 193 VGNVGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy TrEMBL
Match: V4N1E9 (50S ribosomal protein L2, chloroplastic OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001832mg PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 137 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 196

Query: 61  VGNAGVNQKSLGRAGSKL 79
           VGN GVNQKSLGRAGSKL
Sbjct: 197 VGNVGVNQKSLGRAGSKL 214

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy TrEMBL
Match: A0A023T0V5 (50S ribosomal protein L2, chloroplastic OS=Hirtella physophora OX=715485 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 196 VGNAGVNQKSLGRAGSK 212

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy TrEMBL
Match: A0A7H0R1H9 (50S ribosomal protein L2, chloroplastic OS=Viola philippica OX=316493 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 135 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 194

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 195 VGNAGVNQKSLGRAGSK 211

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy TrEMBL
Match: A0A218KG93 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 193 VGNAGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. ExPASy TrEMBL
Match: A0A7G8QE64 (Ribosomal protein L2 OS=Balanops balansae OX=544656 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 193 VGNAGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. NCBI nr
Match: ESQ38906.1 (hypothetical protein EUTSA_v10001832mg [Eutrema salsugineum])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 137 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 196

Query: 61  VGNAGVNQKSLGRAGSKL 79
           VGN GVNQKSLGRAGSKL
Sbjct: 197 VGNVGVNQKSLGRAGSKL 214

[Close]
BLAST of CSPI05G00940.1 vs. NCBI nr
Match: YP_010119775.1 (ribosomal protein L2 [Hemsleya zhejiangensis] >YP_010119798.1 ribosomal protein L2 [Hemsleya zhejiangensis] >QRC26944.1 ribosomal protein L2 [Hemsleya zhejiangensis] >QRC26945.1 ribosomal protein L2 [Hemsleya zhejiangensis])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 194 VGNAGVNQKSLGRAGSK 210

[Close]
BLAST of CSPI05G00940.1 vs. NCBI nr
Match: WP_131792711.1 (50S ribosomal protein L2 [Candidatus Frankia datiscae])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 94

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 95  VGNAGVNQKSLGRAGSK 111

[Close]
BLAST of CSPI05G00940.1 vs. NCBI nr
Match: YP_009136642.1 (ribosomal protein L2 [Viola seoulensis] >YP_009136664.1 ribosomal protein L2 [Viola seoulensis] >YP_009584670.1 ribosomal protein L2 [Viola phalacrocarpa] >YP_009584692.1 ribosomal protein L2 [Viola phalacrocarpa] >YP_009584754.1 ribosomal protein L2 [Viola raddeana] >YP_009584776.1 ribosomal protein L2 [Viola raddeana] >YP_009927495.1 ribosomal protein L2 [Viola ulleungdoensis] >YP_009927518.1 ribosomal protein L2 [Viola ulleungdoensis] >YP_009996183.1 ribosomal protein L2 [Viola philippica] >YP_009996204.1 ribosomal protein L2 [Viola philippica] >QFP99213.1 ribosomal protein L2 [Viola sp. JY-2019] >QRM87582.1 ribosomal protein L2 [Viola japonica] >QSJ54332.1 ribosomal protein L2 [Viola prionantha] >QTH78961.1 ribosomal protein L2 [Viola selkirkii] >AKE07247.1 ribosomal protein L2 [Viola seoulensis])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 135 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 194

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 195 VGNAGVNQKSLGRAGSK 211

[Close]
BLAST of CSPI05G00940.1 vs. NCBI nr
Match: YP_010160873.1 (ribosomal protein L2 [Baccaurea ramiflora] >YP_010160894.1 ribosomal protein L2 [Baccaurea ramiflora] >QRH18379.1 ribosomal protein L2 [Baccaurea ramiflora] >QRH18402.1 ribosomal protein L2 [Baccaurea ramiflora] >QXF60480.1 ribosomal protein L2 [Baccaurea ramiflora] >QXF60502.1 ribosomal protein L2 [Baccaurea ramiflora])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGNAGVNQKSLGRAGSK
Sbjct: 193 VGNAGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGN GVNQKSLGRAGSK
Sbjct: 193 VGNVGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-34
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60
           MPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNAGVNQKSLGRAGSK 78
           VGN GVNQKSLGRAGSK
Sbjct: 193 VGNVGVNQKSLGRAGSK 209

[Close]
BLAST of CSPI05G00940.1 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-10
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAG 76
            V N     K L +AG
Sbjct: 128 TVSNPSHGTKKLYKAG 143

[Close]
BLAST of CSPI05G00940.1 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-10
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 60
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNAGVNQKSLGRAG 76
            V N     K L +AG
Sbjct: 128 TVSNPSHGTKKLYKAG 143

[Close]
BLAST of CSPI05G00940.1 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0 

Query: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 60
           +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQVGNAGVNQKSLGRAGS 77
           GQV   G  +K L +AG+
Sbjct: 168 GQVAGGGRTEKPLLKAGN 185

The following BLAST results are available for this feature:
BLAST of CSPI05G00940.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK52.4e-34100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
Q14F955.3e-3498.7050S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=... [more]
Q14FB65.3e-3498.7050S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=... [more]
A4GYV25.3e-3498.7050S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A... [more]
Q8S8V37.0e-3498.7050S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-... [more]
BLAST of CSPI05G00940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
V4N1E96.8e-3298.7250S ribosomal protein L2, chloroplastic OS=Eutrema salsugineum OX=72664 GN=EUTSA... [more]
A0A023T0V58.8e-32100.0050S ribosomal protein L2, chloroplastic OS=Hirtella physophora OX=715485 GN=rpl2... [more]
A0A7H0R1H98.8e-32100.0050S ribosomal protein L2, chloroplastic OS=Viola philippica OX=316493 GN=rpl2 PE... [more]
A0A218KG938.8e-32100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=31... [more]
A0A7G8QE648.8e-32100.00Ribosomal protein L2 OS=Balanops balansae OX=544656 GN=rpl2 PE=3 SV=1[more]
BLAST of CSPI05G00940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
ESQ38906.11.4e-3198.72hypothetical protein EUTSA_v10001832mg [Eutrema salsugineum][more]
YP_010119775.11.8e-31100.00ribosomal protein L2 [Hemsleya zhejiangensis] >YP_010119798.1 ribosomal protein ... [more]
WP_131792711.11.8e-31100.0050S ribosomal protein L2 [Candidatus Frankia datiscae][more]
YP_009136642.11.8e-31100.00ribosomal protein L2 [Viola seoulensis] >YP_009136664.1 ribosomal protein L2 [Vi... [more]
YP_010160873.11.8e-31100.00ribosomal protein L2 [Baccaurea ramiflora] >YP_010160894.1 ribosomal protein L2 ... [more]
BLAST of CSPI05G00940.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00830.11.1e-3497.40ribosomal protein L2 [more]
ATCG01310.11.1e-3497.40ribosomal protein L2 [more]
AT2G44065.13.2e-1044.74Ribosomal protein L2 family [more]
AT2G44065.23.2e-1044.74Ribosomal protein L2 family [more]
AT3G51190.11.2e-0741.03Ribosomal protein L2 family [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 1..78
e-value: 1.5E-14
score: 64.3
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 1..77
e-value: 1.9E-27
score: 95.9
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..63
e-value: 7.2E-31
score: 108.0
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 1..77
NoneNo IPR availablePANTHERPTHR13691:SF42SUBFAMILY NOT NAMEDcoord: 1..77
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 1..77

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G00940CSPI05G00940gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G00940.1.utr5p1CSPI05G00940.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G00940.1.cds1CSPI05G00940.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G00940.1CSPI05G00940.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016740 transferase activity