CSPI04G19720.2 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI04G19720.2
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein kinase domain-containing protein
LocationChr4: 17513562 .. 17515974 (-)
Sequence length1864
RNA-Seq ExpressionCSPI04G19720.2
SyntenyCSPI04G19720.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAATAATTAAATTTGCCTTTAACATGTGGTATCAGAGCCCATTAAACCCAAACGAGTATTCGGTCTTCGGTCCAAGATAGGTGAAACCAAAGAGGCACCATCATCTTGAGGGGGCATGTTGGAGAAGTTGAGAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAGTCAATAACTAGAATGAAAAAAATGGGAATACCAACGCATCCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAAAGCCCCGAACCATATAGTACTTACTACCGGTGCCACGGAGAGATATGTTTTTAGATCTCGCAGTGAAAACCCTCCTACTTTATAGTAATTTGTAATAAATAATGATAGTAATTTGTAATAAATAATGATAGGTAATTCACATTGGAAAAACCAAGGGGACTCATACTCCATATAATGTAGATGGGCTACTCCTCTCATTGCCAATTGGTTTTGAGATGGAACCCCACACTACCAAATTTAACCCAACAGAAATCCCCTCAAGGATTTAAAAAAATATCACAAAGGAATAAACTTATTTTCAACATATTTCTTTTGACAAAATTACCCAACATGTTTGTTCCTCACATACTAAGCCTGATATGGCTTCTTGTTTTAAAATGTTATGTCATATTTTGTCAGCCACAATGCTTTATACAACAAATACGTGATAGAGATATGACAATAAACAATGTCCTTTCAGATGGAAGTCTAACCCCGCAAATGAAGGTATGTGATTTTGGTTCCTCTAAGGTCTTTGATTGAGGGAATTTTATTAATTTTCTCATTTTAAATAAACATGTCCTTATGCTTGTGCTCTCGATCTCATTGTCAATTTGTTCCGAGTAATTGCATTCAAAACCAAAAAGAAAAATAAGTATCATATCTATGGCTTCTTGTTTACACCATACTTTGTCTGACACAATGCTACTTTATGCAGCGAATATATCGTACATGTTTGATGCTAAACAAGAACCTTTCAGATAAAACCCTAGCTGAGAAGCTGAAGACATTTGATTTTGGCTTCTCCAAGGTCTTTGATTAAGAGAATTTCATTATTTAATATGCCGATTTTAAATGCAAGTTTCCGTATAATATTGTGTGCTCTTCTATTGTCAATTTGTGGTAAGTAATTGCATTAACAATTTAATATACAAATTTGATATTGTGAGATTCTAAGCCTCTTGATAAGGCGTCTTGTTTAAATATGTTCTCTACCATCCATTCTTTCTCTGACACGATGCTTTTACACAGCAAACATGTACTAAATATATGTCGATGCTGAACATTATCCTTTCAGATGGAAGTACAAGTACAACGTCGAAATTATTAAAGGTAACTTAGTATGTGATTTTGGGCTCTATCTTTGATTAAGGGAATTTTGTTAATTTGCTCATTTTAGATAAACATGTCCTTGTACTTACACTCTTCTATTGTACTTCCATTGAAAACAAAAATCAAATGTTTGTTTTGAAAAATACTATATGTATATTATGGCTTCTTGTTTAAAAATGTGTTATGCACCCTATTATTCATAGTTATAGATGCAGGGGTAAAAAGGGGATTGATCAAGTGACAGCATAGCCACTGGGAGACATGGGAGGAATATCTGTTGGGGGACCCACTCCCGAGAGAATTGGAGTACTTAAGGAATGTTTTGAGATTGTTGAAGATTAGGTCACTTTTGGGAAAAGCTGTGGAATGCTTTTTGGTCGGAGAACCATCTTCTTGAAATTGCTGGGGGAGCTTTCTTATTTTCTTTCCTTTATTACTACTTGTTTTGCTTGCTGTTATCATTCTCCCTGGTTTAAGTAAGCATTGTGAAAACTACCCTCTTTTCTATTTTCAATATATATCATCACAGGGTACCTATCTTTGTTTTCTCTAGTATTGTTGGGATTTTCTAAGTGGTAGGTAATGAAGTCCTAACATATTAGTTATTAGAGCCGCCAAAAATCCTTGAGAGGACACGAGGAATGGCATAGAAAGAATTGGAGGAAATGATGGAGATGAGCGAGAAAAAGATCATGGATTTGAAAGAGTTGATACACGTGTGGAAAAACTATCGGATGAAGTGACGGAAAGAGTTATGATATATATATTTATATTTATGCCATATGTTCTTTATTGTAAGTCTACTCCCGACGACCTCCACCGCTTCCTTCATCACATGATTTGGGGTCGAGTGATGATCTTCCAATTGCTCTTCGTAAAGGTAAAAGCAAATGTACTTACCCCGTTTCTTTCTTTACTTCCTATCACCAGCTATCTCCATCCACATATGCTTTTATTACGTCTCTTAAGTCCACATCTATTCCTAATTCTATTCATGAAGCTTTATCTCATCCTGGCTGCCGAAATGCAATGATTGAGGAGATGACTGCTTTAGATGATAA

mRNA sequence

ATAAATAATTAAATTTGCCTTTAACATGTGGTATCAGAGCCCATTAAACCCAAACGAGTATTCGGTCTTCGGTCCAAGATAGGTGAAACCAAAGAGGCACCATCATCTTGAGGGGGCATGTTGGAGAAGTTGAGAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAGTCAATAACTAGAATGAAAAAAATGGGAATACCAACGCATCCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAAAGCCCCGAACCATATAGTACTTACTACCGGTGCCACGGAGAGATATGTTTTTAGATCTCGCAGTGAAAACCCTCCTACTTTATAGTAATTTGTAATAAATAATGATAGTAATTTGTAATAAATAATGATAGGTAATTCACATTGGAAAAACCAAGGGGACTCATACTCCATATAATGTAGATGGGCTACTCCTCTCATTGCCAATTGGTTTTGAGATGGAACCCCACACTACCAAATTTAACCCAACAGAAATCCCCTCAAGGATTTAAAAAAATATCACAAAGGAATAAACTTATTTTCAACATATTTCTTTTGACAAAATTACCCAACATGTTTGTTCCTCACATACTAAGCCTGATATGGCTTCTTGTTTTAAAATGTTATGTCATATTTTGTCAGCCACAATGCTTTATACAACAAATACGTGATAGAGATATGACAATAAACAATGTCCTTTCAGATGGAAGTCTAACCCCGCAAATGAAGCGAATATATCGTACATGTTTGATGCTAAACAAGAACCTTTCAGATAAAACCCTAGCTGAGAAGCTGAAGACATTTGATTTTGGCTTCTCCAAGGTCTTTGATTAAGAGAATTTCATTATTTAATATGCCGATTTTAAATGCAAGTTTCCGTATAATATTGTGTGCTCTTCTATTGTCAATTTGTGCAAACATGTACTAAATATATGTCGATGCTGAACATTATCCTTTCAGATGGAAGTACAAGTACAACGTCGAAATTATTAAAGATGCAGGGGTAAAAAGGGGATTGATCAAGTGACAGCATAGCCACTGGGAGACATGGGAGGAATATCTGTTGGGGGACCCACTCCCGAGAGAATTGGAGTACTTAAGGAATGTTTTGAGATTGTTGAAGATTAGGTCACTTTTGGGAAAAGCTGTGGAATGCTTTTTGGTCGGAGAACCATCTTCTTGAAATTGCTGGGGGAGCTTTCTTATTTTCTTTCCTTTATTACTACTTGTTTTGCTTGCTGTTATCATTCTCCCTGGTTTAAGTAAGCATTGTGAAAACTACCCTCTTTTCTATTTTCAATATATATCATCACAGGGTACCTATCTTTGTTTTCTCTAGTATTGTTGGGATTTTCTAAGTGGTAGGTAATGAAGTCCTAACATATTAGTTATTAGAGCCGCCAAAAATCCTTGAGAGGACACGAGGAATGGCATAGAAAGAATTGGAGGAAATGATGGAGATGAGCGAGAAAAAGATCATGGATTTGAAAGAGTTGATACACGTGTGGAAAAACTATCGGATGAAGTGACGGAAAGAGTTATGATATATATATTTATATTTATGCCATATGTTCTTTATTGTAAGTCTACTCCCGACGACCTCCACCGCTTCCTTCATCACATGATTTGGGGTCGAGTGATGATCTTCCAATTGCTCTTCGTAAAGGTAAAAGCAAATGTACTTACCCCGTTTCTTTCTTTACTTCCTATCACCAGCTATCTCCATCCACATATGCTTTTATTACGTCTCTTAAGTCCACATCTATTCCTAATTCTATTCATGAAGCTTTATCTCATCCTGGCTGCCGAAATGCAATGATTGAGGAGATGACTGCTTTAGATGATAA

Coding sequence (CDS)

ATGGGCTACTCCTCTCATTGCCAATTGGTTTTGAGATGGAACCCCACACTACCAAATTTAACCCAACAGAAATCCCCTCAAGGATTTAAAAAAATATCACAAAGGAATAAACTTATTTTCAACATATTTCTTTTGACAAAATTACCCAACATGTTTGTTCCTCACATACTAAGCCTGATATGGCTTCTTGTTTTAAAATGTTATGTCATATTTTGTCAGCCACAATGCTTTATACAACAAATACGTGATAGAGATATGACAATAAACAATGTCCTTTCAGATGGAAGTCTAACCCCGCAAATGAAGCGAATATATCGTACATGTTTGATGCTAAACAAGAACCTTTCAGATAAAACCCTAGCTGAGAAGCTGAAGACATTTGATTTTGGCTTCTCCAAGGTCTTTGATTAA

Protein sequence

MGYSSHCQLVLRWNPTLPNLTQQKSPQGFKKISQRNKLIFNIFLLTKLPNMFVPHILSLIWLLVLKCYVIFCQPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFSKVFD*
Homology
[Close]
BLAST of CSPI04G19720.2 vs. ExPASy TrEMBL
Match: A0A0A0L3P0 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G454150 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 86  MTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFSK 134
           MTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFSK
Sbjct: 1   MTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFSK 48

[Close]
BLAST of CSPI04G19720.2 vs. NCBI nr
Match: XP_031739576.1 (CBL-interacting serine/threonine-protein kinase 17 isoform X3 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 73  QPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 132
           +PQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS
Sbjct: 118 KPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 177

Query: 133 K 134
           K
Sbjct: 178 K 178

[Close]
BLAST of CSPI04G19720.2 vs. NCBI nr
Match: XP_011653877.1 (serine/threonine-protein kinase SRK2G isoform X1 [Cucumis sativus] >KGN54993.2 hypothetical protein Csa_012125 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 73  QPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 132
           +PQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS
Sbjct: 227 KPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 286

Query: 133 K 134
           K
Sbjct: 287 K 287

[Close]
BLAST of CSPI04G19720.2 vs. NCBI nr
Match: XP_011653879.1 (CBL-interacting serine/threonine-protein kinase 17 isoform X4 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 73  QPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 132
           +PQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS
Sbjct: 118 KPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 177

Query: 133 K 134
           K
Sbjct: 178 K 178

[Close]
BLAST of CSPI04G19720.2 vs. NCBI nr
Match: XP_031739575.1 (serine/threonine-protein kinase SRK2G isoform X2 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 73  QPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 132
           +PQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS
Sbjct: 227 KPQCFIQQIRDRDMTINNVLSDGSLTPQMKRIYRTCLMLNKNLSDKTLAEKLKTFDFGFS 286

Query: 133 K 134
           K
Sbjct: 287 K 287

The following BLAST results are available for this feature:
BLAST of CSPI04G19720.2 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G19720.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3P01.6e-17100.00Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G454... [more]
BLAST of CSPI04G19720.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739576.12.6e-2598.36CBL-interacting serine/threonine-protein kinase 17 isoform X3 [Cucumis sativus][more]
XP_011653877.12.6e-2598.36serine/threonine-protein kinase SRK2G isoform X1 [Cucumis sativus] >KGN54993.2 h... [more]
XP_011653879.12.6e-2598.36CBL-interacting serine/threonine-protein kinase 17 isoform X4 [Cucumis sativus][more]
XP_031739575.12.6e-2598.36serine/threonine-protein kinase SRK2G isoform X2 [Cucumis sativus][more]
BLAST of CSPI04G19720.2 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G19720CSPI04G19720gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G19720.2.utr3p3CSPI04G19720.2.utr3p3three_prime_UTR
CSPI04G19720.2.utr3p2CSPI04G19720.2.utr3p2three_prime_UTR
CSPI04G19720.2.utr3p1CSPI04G19720.2.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G19720.2.cds2CSPI04G19720.2.cds2CDS
CSPI04G19720.2.cds1CSPI04G19720.2.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G19720.2.utr5p1CSPI04G19720.2.utr5p1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G19720.2CSPI04G19720.2-proteinpolypeptide