CSPI03G25070.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G25070.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
LocationChr3: 22288700 .. 22289466 (-)
Sequence length648
RNA-Seq ExpressionCSPI03G25070.1
SyntenyCSPI03G25070.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTGCAATGCGACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTAGTTGTCTTAGATACTTATTGAATACAAGGCCAGATCTTTTATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCACTTATTCGTAAGGTCCCAGAGAATTCAATATATTCGGTTACTCTGACAGTGATTTAGCTGGTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGTAGCTTGCCAAGCATTGTGGTTAAGATGCCTGGTTAGCGAGATAGTCAGAATGGAGCCAAAGCCGGTAACATTATTTGTGGACAACAAATCCACGATAGCTCTCATGAAGAACCTGTATTTCATGGTCGCAACAAGCACATAGATACACGTTTTCATTTCATTCGAGACTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAACTTAGAATCATGTCAGAATTAG

mRNA sequence

ATGGCTGATTGCAATGCGACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTAGTTGTCTTAGATACTTATTGAATACAAGGCCAGATCTTTTATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGTGATTTAGCTGGTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCCGAGATAGTCAGAATGGAGCCAAAGCCGGTAACATTATTTGTGGACAACAAATCCACGATAGCTCTCATGAAGAACCTGTATTTCATGGTCGCAACAAGCACATAGATACACGTTTTCATTTCATTCGAGACTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAACTTAGAATCATGTCAGAATTAG

Coding sequence (CDS)

ATGGCTGATTGCAATGCGACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTAGTTGTCTTAGATACTTATTGAATACAAGGCCAGATCTTTTATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGTGATTTAGCTGGTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCCGAGATAGTCAGAATGGAGCCAAAGCCGGTAACATTATTTGTGGACAACAAATCCACGATAGCTCTCATGAAGAACCTGTATTTCATGGTCGCAACAAGCACATAGATACACGTTTTCATTTCATTCGAGACTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAACTTAGAATCATGTCAGAATTAG

Protein sequence

MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYMERPTTMHYKVVKQILSDLAGDLDGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQNGAKAGNIICGQQIHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAAMRQLLGVRNLESCQN*
Homology
BLAST of CSPI03G25070.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-26
Identity = 87/241 (36.10%), Postives = 117/241 (48.55%), Query Frame = 0

Query: 6    ATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYMERPTTM 65
            AT     PK  LH  T+  P D TEYR IV  L+YL  TRPDL Y V   S+YM  PT  
Sbjct: 1205 ATPMATSPKLTLHSGTK-LP-DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDD 1264

Query: 66   HYKVVKQIL--------------------------SDLAGDLDGRKSTSGMTFYLNESLV 125
            H+  +K++L                          +D AGD D   ST+G   YL    +
Sbjct: 1265 HWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPI 1324

Query: 126  SWNSQKQKTVALSSCEAEF--IAATTRD--------SQNGAKAGN---IICGQQIHDSSH 185
            SW+S+KQK V  SS EAE+  +A T+ +        ++ G +  +   I C         
Sbjct: 1325 SWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLC 1384

Query: 186  EEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAAMRQLLG 208
              PVFH R KHI   +HFIR+ V++G + V  V+T +Q AD LTK L+ V      + +G
Sbjct: 1385 ANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIG 1443

BLAST of CSPI03G25070.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-24
Identity = 71/217 (32.72%), Postives = 110/217 (50.69%), Query Frame = 0

Query: 31   YRSIVSCLRY-LLNTRPDLLYVVGMASRYMERPTTMHYKVVKQIL--------------- 90
            Y S V  L Y ++ TRPD+ + VG+ SR++E P   H++ VK IL               
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG 1170

Query: 91   ----------SDLAGDLDGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTR 150
                      +D+AGD+D RKS++G  F  +   +SW S+ QK VALS+ EAE+IAAT  
Sbjct: 1171 SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATET 1230

Query: 151  DSQN------------GAKAGNIICGQQIHDSSHEEPVFHGRNKHIDTRFHFIRDCVENG 210
              +               K   + C  Q      +  ++H R KHID R+H+IR+ V++ 
Sbjct: 1231 GKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290

BLAST of CSPI03G25070.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-24
Identity = 81/237 (34.18%), Postives = 109/237 (45.99%), Query Frame = 0

Query: 10   PMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYMERPTTMHYKV 69
            PM P  +L   +     D TEYR IV  L+YL  TRPD+ Y V   S++M  PT  H + 
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQA 1283

Query: 70   VKQIL--------------------------SDLAGDLDGRKSTSGMTFYLNESLVSWNS 129
            +K+IL                          +D AGD D   ST+G   YL    +SW+S
Sbjct: 1284 LKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSS 1343

Query: 130  QKQKTVALSSCEAEF--IAATTRDSQ-----------NGAKAGNIICGQQIHDSSHEEPV 189
            +KQK V  SS EAE+  +A T+ + Q              +   I C           PV
Sbjct: 1344 KKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPV 1403

Query: 190  FHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAAMRQLLGV 208
            FH R KHI   +HFIR+ V++G + V  V+T +Q AD LTK L+          +GV
Sbjct: 1404 FHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

BLAST of CSPI03G25070.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 77/256 (30.08%), Postives = 120/256 (46.88%), Query Frame = 0

Query: 1    MADCNATKYPMEPKAQ---LHKDTEGAPIDATEYRSIVSCLRY-LLNTRPDLLYVVGMAS 60
            M +CNA   P+  K     L+ D +      T  RS++ CL Y +L TRPDL   V + S
Sbjct: 1152 MENCNAVSTPLPSKINYELLNSDED----CNTPCRSLIGCLMYIMLCTRPDLTTAVNILS 1211

Query: 61   RYMERPTTMHYKVVKQIL----------------------------SDLAGDLDGRKSTS 120
            RY  +  +  ++ +K++L                            SD AG    RKST+
Sbjct: 1212 RYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTT 1271

Query: 121  GMTFYLNE-SLVSWNSQKQKTVALSSCEAEFIA--ATTRD--------SQNGAKAGNIIC 180
            G  F + + +L+ WN+++Q +VA SS EAE++A     R+        +    K  N I 
Sbjct: 1272 GYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPI- 1331

Query: 181  GQQIHDSSH------EEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTK 208
              +I++ +         P  H R KHID ++HF R+ V+N  I +E++ T  Q AD+ TK
Sbjct: 1332 --KIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTK 1391

BLAST of CSPI03G25070.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-12
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 0

Query: 31  YRSIVSCLRYLL-NTRPDLLYVVGMASRYMERPTTMHYKVVKQIL--------------- 90
           Y S V  + YL+  TRPDL   VG+ S++   P   H++ +K++L               
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 91  -----------SDLAGDLDGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIA 121
                      +D AGD++ R+STSG  F LN   VSW S+KQ+TVALSS E E++A
Sbjct: 66  AGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMA 122

BLAST of CSPI03G25070.1 vs. ExPASy TrEMBL
Match: Q10RM4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.6e-65
Identity = 138/255 (54.12%), Postives = 166/255 (65.10%), Query Frame = 0

Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M +CN+   P++P++QL KD EG P+DATEYR I+  LRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFME 1214

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPT MH+K VKQIL                           SDLAGDLD R+ST GM FY
Sbjct: 1215 RPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFY 1274

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQN-------------GAKAGNIICGQQ 180
            +N+SLV+W+SQKQKTVALSSCEAEF+AATT   Q                KA  +    +
Sbjct: 1275 INQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNR 1334

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CV+ GQI+VEFV T EQRAD LTK L   KL  
Sbjct: 1335 SAIALMKNPVFHGRSKHIDTRYHFIRECVDGGQIVVEFVRTEEQRADALTKGLPAAKLVT 1394

BLAST of CSPI03G25070.1 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.2e-64
Identity = 136/255 (53.33%), Postives = 163/255 (63.92%), Query Frame = 0

Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++ CLRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPTTMH K VK IL                           SDLAGD+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
            +N SLVSW SQKQKTVALSSCEAEF+AAT                    AK   +    +
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPVKLFVDNK 1352

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CVE+GQI++EFV++ EQRAD +TK L   KLA 
Sbjct: 1353 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVSSEEQRADAMTKGLPAAKLAT 1412

BLAST of CSPI03G25070.1 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.8e-64
Identity = 136/255 (53.33%), Postives = 162/255 (63.53%), Query Frame = 0

Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++ CLRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPTTMH K VK IL                           SDLAGD+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
            +N SLVSW SQKQKTVALSSCEAEF+AAT                    AK   +    +
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNK 1352

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CVE+GQI++EFV + EQRAD +TK L   KLA 
Sbjct: 1353 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRSEEQRADAMTKGLPAAKLAT 1412

BLAST of CSPI03G25070.1 vs. ExPASy TrEMBL
Match: A0A0P0XB91 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.8e-64
Identity = 136/255 (53.33%), Postives = 162/255 (63.53%), Query Frame = 0

Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++ CLRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPTTMH K VK IL                           SDLAGD+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
            +N SLVSW SQKQKTVALSSCEAEF+AAT                    AK   +    +
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNK 1352

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CVE+GQI++EFV + EQRAD +TK L   KLA 
Sbjct: 1353 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRSEEQRADAMTKGLPAAKLAT 1412

BLAST of CSPI03G25070.1 vs. ExPASy TrEMBL
Match: A0A6G1EJC3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014570 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.4e-63
Identity = 136/255 (53.33%), Postives = 165/255 (64.71%), Query Frame = 0

Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           M++CN TK+PME + QLHKD EG P DA EYR I+ CLRYLL+TRPD+ + VG+ASR++E
Sbjct: 65  MSECNPTKFPMELRTQLHKDGEGHPADAMEYRRIIGCLRYLLHTRPDMSFAVGVASRFIE 124

Query: 61  RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
           RPT MH+K VKQIL                           SDLAGDLD RKST GM FY
Sbjct: 125 RPTVMHHKAVKQILRYLKGIIHYGLVYSKGGGAEVITGYTDSDLAGDLDDRKSTGGMAFY 184

Query: 121 LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
           +NESLV+W+SQKQ+TVALSSCEAEF+AAT    Q                +   +    +
Sbjct: 185 VNESLVAWSSQKQRTVALSSCEAEFMAATAAACQALWLRSLLAELNKEQPRPVKVFVDNK 244

Query: 181 IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
              +  + PVFHGR+KHIDTRFHFIR+CVE GQI+V+F+   EQRAD LTKAL  VKL  
Sbjct: 245 SAIALMKNPVFHGRSKHIDTRFHFIRECVEGGQIVVKFMRMEEQRADPLTKALPVVKLVT 304

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: XP_031741734.1 (uncharacterized protein LOC116403928 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 1.6e-90
Identity = 184/255 (72.16%), Postives = 193/255 (75.69%), Query Frame = 0

Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           MADCNATKYPMEPKAQLHK+T+GAPIDATEYRSIV CLRYLLNTRPDL Y VGMASRY+E
Sbjct: 144 MADCNATKYPMEPKAQLHKETKGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYIE 203

Query: 61  RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
           RPTTMHYKVVKQIL                           SDLAGDLDGRKSTSGMTFY
Sbjct: 204 RPTTMHYKVVKQILGYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDGRKSTSGMTFY 263

Query: 121 LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
           LNESLVSWNSQKQKTVALSSCEAEFIAATT   Q                +   +    +
Sbjct: 264 LNESLVSWNSQKQKTVALSSCEAEFIAATTAACQALWLRCLVSEIVRMEPRPITLFVDNK 323

Query: 181 IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
              +  + PVFHGRNKHIDTRFHFIR+CVENGQIIVEFVNTGEQRADVLTKALTGVKLAA
Sbjct: 324 SAIALMKNPVFHGRNKHIDTRFHFIRECVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 383

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: KAG6531025.1 (hypothetical protein ZIOFF_004795 [Zingiber officinale])

HSP 1 Score: 330.5 bits (846), Expect = 1.1e-86
Identity = 166/228 (72.81%), Postives = 183/228 (80.26%), Query Frame = 0

Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           M+DCNATK PMEPK QLHKD EG PIDATEYR ++ CLRYLL+TRPDL Y VGMASRYME
Sbjct: 322 MSDCNATKQPMEPKTQLHKDLEGTPIDATEYRRVIGCLRYLLHTRPDLSYSVGMASRYME 381

Query: 61  RPTTMHYKVVKQILSDLAGDLDGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIA 120
           +PT+MH+KVVKQILSDLAGDLDGRKSTSGMTFY NESLVSWNSQKQKTVALSSCEAEF+A
Sbjct: 382 KPTSMHHKVVKQILSDLAGDLDGRKSTSGMTFYFNESLVSWNSQKQKTVALSSCEAEFMA 441

Query: 121 ATTRDSQ-------------NGAKAGNIICGQQIHDSSHEEPVFHGRNKHIDTRFHFIRD 180
           ATT   Q                K   +    +   +  + PVFHGR+KHIDTRFHFIR+
Sbjct: 442 ATTAACQALWLRSLVSELTGEEPKPVTLFVDNKSAIALMKNPVFHGRSKHIDTRFHFIRE 501

Query: 181 CVENGQIIVEFVNTGEQRADVLTKALTGVKLAAMRQLLGVRNLESCQN 216
           CVENGQI+VEF+NTGEQRADVLTK L GVKLA MRQLLGVR+LE CQN
Sbjct: 502 CVENGQIVVEFINTGEQRADVLTKTLPGVKLAVMRQLLGVRDLEPCQN 549

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: XP_031745072.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 178/256 (69.53%), Postives = 186/256 (72.66%), Query Frame = 0

Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSI-VSCLRYLLNTRPDLLYVVGMASRYM 60
           MADCNATKYPMEPKAQLHKDTE APIDATEYRSI V  L YLLNTRPDL YVVGMASRYM
Sbjct: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60

Query: 61  ERPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTF 120
           ERPTTMHYKVVKQIL                           SDLAGDLDGRKSTSGMTF
Sbjct: 61  ERPTTMHYKVVKQILRYLRGTIHFGLTYTKGPREFNIFGYSDSDLAGDLDGRKSTSGMTF 120

Query: 121 YLNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQ 180
           YLNESLVSWNSQKQKTVALSSCE EFIA TT   Q                +   +    
Sbjct: 121 YLNESLVSWNSQKQKTVALSSCEVEFIATTTAACQALWLRCLVSEIVGMEPRPVTLFVDN 180

Query: 181 QIHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLA 216
           +   +  + PVFHGR+KHIDT FHFIR+CV+NGQIIVE VNTGEQRADVLTKALTGVKLA
Sbjct: 181 KSAIALMKNPVFHGRSKHIDTCFHFIRECVKNGQIIVEVVNTGEQRADVLTKALTGVKLA 240

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: KAG6474529.1 (hypothetical protein ZIOFF_068466 [Zingiber officinale])

HSP 1 Score: 318.9 bits (816), Expect = 3.3e-83
Identity = 167/255 (65.49%), Postives = 185/255 (72.55%), Query Frame = 0

Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           MADCNATK+PMEPK QLHKD EG P+DATEYR ++ CLRYLL+TRPDL Y VGMASRYME
Sbjct: 45  MADCNATKHPMEPKTQLHKDLEGTPVDATEYRHVIGCLRYLLHTRPDLSYPVGMASRYME 104

Query: 61  RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
           RPTTMH+KVVKQIL                           SDLAGDLDGRKSTSGMTFY
Sbjct: 105 RPTTMHHKVVKQILRYLKGTIHFGLTYIKGPQEISIFGYSDSDLAGDLDGRKSTSGMTFY 164

Query: 121 LNESLVSWNSQKQKTVALSSCEAEFIAATTRD-------------SQNGAKAGNIICGQQ 180
            NESLVSWNSQKQKTVALSSCEAEF+AATT               +    K   +    +
Sbjct: 165 FNESLVSWNSQKQKTVALSSCEAEFMAATTAACHALWLRSLTSELTGEKPKPVTLFVDNK 224

Query: 181 IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
              +  + PVFHGR+KHIDTRFHFIR+CVENGQI+VEF+NTGEQRADVLTKAL GVKLA 
Sbjct: 225 SAIALMKNPVFHGRSKHIDTRFHFIRECVENGQIMVEFINTGEQRADVLTKALPGVKLAV 284

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: KAG6498781.1 (hypothetical protein ZIOFF_038503 [Zingiber officinale])

HSP 1 Score: 318.9 bits (816), Expect = 3.3e-83
Identity = 167/255 (65.49%), Postives = 186/255 (72.94%), Query Frame = 0

Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           MADCNATK+PMEPK QLHKD EG P+DAT+YR ++ CLRYLL+TRPDL Y VGMASRYME
Sbjct: 340 MADCNATKHPMEPKTQLHKDLEGTPVDATKYRRVIGCLRYLLHTRPDLSYPVGMASRYME 399

Query: 61  RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
           RPTTMH+KVVKQIL                           SDLAGDLDGRKSTSGMTFY
Sbjct: 400 RPTTMHHKVVKQILRYLKGTIHFGLAYIKGSPEISIFGYSGSDLAGDLDGRKSTSGMTFY 459

Query: 121 LNESLVSWNSQKQKTVALSSCEAEFIAATTRD-------------SQNGAKAGNIICGQQ 180
            NESLVSWNSQKQKTVALSSCEAEF+AATT               +    K   +    +
Sbjct: 460 FNESLVSWNSQKQKTVALSSCEAEFMAATTAACHALWLRSLTSELTGEKPKPVTLFVDNK 519

Query: 181 IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
              +  + PVFHGRNKHIDTRFHFIR+CVE GQI+VEFVNTGEQRADVLTKAL+GVKLA 
Sbjct: 520 SAIALMKNPVFHGRNKHIDTRFHFIRECVEKGQIVVEFVNTGEQRADVLTKALSGVKLAT 579

BLAST of CSPI03G25070.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-13
Identity = 45/146 (30.82%), Postives = 70/146 (47.95%), Query Frame = 0

Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           M DC     P+  K      T   P D +++RSIV  L+YL  TRPD+ Y V +  + M 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  RPTTMHYKVVKQIL--------------------------SDLAGDLDGRKSTSGMTFYL 120
            PT   + ++K++L                          SD AG    R+ST+G   +L
Sbjct: 131 EPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFL 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZT943.9e-2636.10Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109781.6e-2432.72Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW23.6e-2434.18Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P041461.3e-1830.08Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0CV725.4e-1237.61Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
Q10RM42.6e-6554.12Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
B8BDZ62.2e-6453.33Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4... [more]
Q0J8A62.8e-6453.33Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE... [more]
A0A0P0XB912.8e-6453.33Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE... [more]
A0A6G1EJC31.4e-6353.33Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyerian... [more]
Match NameE-valueIdentityDescription
XP_031741734.11.6e-9072.16uncharacterized protein LOC116403928 [Cucumis sativus][more]
KAG6531025.11.1e-8672.81hypothetical protein ZIOFF_004795 [Zingiber officinale][more]
XP_031745072.11.1e-8369.53secreted RxLR effector protein 161-like [Cucumis sativus][more]
KAG6474529.13.3e-8365.49hypothetical protein ZIOFF_068466 [Zingiber officinale][more]
KAG6498781.13.3e-8365.49hypothetical protein ZIOFF_038503 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
ATMG00810.15.0e-1330.82DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 84..209
NoneNo IPR availablePANTHERPTHR11439:SF355CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 84..209
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 75..195
e-value: 2.15704E-48
score: 153.393

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G25070CSPI03G25070gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G25070.1.cds3CSPI03G25070.1.cds3CDS
CSPI03G25070.1.cds2CSPI03G25070.1.cds2CDS
CSPI03G25070.1.cds1CSPI03G25070.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G25070.1CSPI03G25070.1-proteinpolypeptide