CSPI03G23280.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G23280.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 20113991 .. 20114317 (+)
Sequence length327
RNA-Seq ExpressionCSPI03G23280.1
SyntenyCSPI03G23280.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAATTCTTCTCCAAATGTGGTTTCATTTCTTTGGTAGAGAAAGTGTGGGCTATGGTCAGTATGGAGCATTCTCATGAAGCAGCAATGAGGTGGAGGAAGTCAGCCAAAAGACCTAAACCCGGTGGGGGCCCAAACCAAATCGCTCAAAAACTGGTTGGTGAAGGAGGACGCAATGCTAGGTCTATTATTGAGCCTCAAATGGGAAATGGTGGATTTGATCAGAAGGGGAACACCATAGTGGGCCCTTTTCTAGAAACTTGGTTGATGGGCCAGCTACTAAACATCGATCAAATGGGGATAGTGGAATCAACTTGCATATAG

mRNA sequence

ATGAGTGAATTCTTCTCCAAATGTGGTTTCATTTCTTTGGTAGAGAAAGTGTGGGCTATGGTCAGTATGGAGCATTCTCATGAAGCAGCAATGAGGTGGAGGAAGTCAGCCAAAAGACCTAAACCCGGTGGGGGCCCAAACCAAATCGCTCAAAAACTGGTTGGTGAAGGAGGACGCAATGCTAGGTCTATTATTGAGCCTCAAATGGGAAATGGTGGATTTGATCAGAAGGGGAACACCATAGTGGGCCCTTTTCTAGAAACTTGGTTGATGGGCCAGCTACTAAACATCGATCAAATGGGGATAGTGGAATCAACTTGCATATAG

Coding sequence (CDS)

ATGAGTGAATTCTTCTCCAAATGTGGTTTCATTTCTTTGGTAGAGAAAGTGTGGGCTATGGTCAGTATGGAGCATTCTCATGAAGCAGCAATGAGGTGGAGGAAGTCAGCCAAAAGACCTAAACCCGGTGGGGGCCCAAACCAAATCGCTCAAAAACTGGTTGGTGAAGGAGGACGCAATGCTAGGTCTATTATTGAGCCTCAAATGGGAAATGGTGGATTTGATCAGAAGGGGAACACCATAGTGGGCCCTTTTCTAGAAACTTGGTTGATGGGCCAGCTACTAAACATCGATCAAATGGGGATAGTGGAATCAACTTGCATATAG

Protein sequence

MSEFFSKCGFISLVEKVWAMVSMEHSHEAAMRWRKSAKRPKPGGGPNQIAQKLVGEGGRNARSIIEPQMGNGGFDQKGNTIVGPFLETWLMGQLLNIDQMGIVESTCI*
Homology
[Close]
BLAST of CSPI03G23280.1 vs. ExPASy TrEMBL
Match: A0A0A0L872 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417700 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.9e-54
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MSEFFSKCGFISLVEKVWAMVSMEHSHEAAMRWRKSAKRPKPGGGPNQIAQKLVGEGGRN 60
           MSEFFSKCGFISLV+KVWAMVSM+HSHEAAMRWRKSAKRPKPGGGPNQI QKLVGEGGRN
Sbjct: 1   MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN 60

Query: 61  ARSIIEPQMGNGGFDQKGNTIVGPFLETWLMGQLLNIDQMGIVESTCI 109
           ARSIIEPQMGNGGFDQKGNT+VGPFLETWLMGQLLNIDQMGIVESTCI
Sbjct: 61  ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI 108

[Close]
BLAST of CSPI03G23280.1 vs. NCBI nr
Match: KGN57978.1 (hypothetical protein Csa_010179 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 8.1e-54
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   MSEFFSKCGFISLVEKVWAMVSMEHSHEAAMRWRKSAKRPKPGGGPNQIAQKLVGEGGRN 60
           MSEFFSKCGFISLV+KVWAMVSM+HSHEAAMRWRKSAKRPKPGGGPNQI QKLVGEGGRN
Sbjct: 1   MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN 60

Query: 61  ARSIIEPQMGNGGFDQKGNTIVGPFLETWLMGQLLNIDQMGIVESTCI 109
           ARSIIEPQMGNGGFDQKGNT+VGPFLETWLMGQLLNIDQMGIVESTCI
Sbjct: 61  ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI 108

The following BLAST results are available for this feature:
BLAST of CSPI03G23280.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G23280.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8723.9e-5496.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417700 PE=4 SV=1[more]
BLAST of CSPI03G23280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57978.18.1e-5496.30hypothetical protein Csa_010179 [Cucumis sativus][more]
BLAST of CSPI03G23280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G23280CSPI03G23280gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G23280.1.cds1CSPI03G23280.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G23280.1CSPI03G23280.1-proteinpolypeptide