CSPI03G21710.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G21710.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 18022137 .. 18022476 (-)
Sequence length234
RNA-Seq ExpressionCSPI03G21710.1
SyntenyCSPI03G21710.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTCAGGTAAACAATAGGTTAAAGTCTAGAATTTGTTTTTAAATTATTTTCCCTAAAAAAATTATTTATCTCATGCAACTAAGTGATTATTAATGAAGTAATCACTGGGCAGTGTCAAACCACCGCCCATCTACGTTCGAACATCATGCTACCGGCAGCGTCTCTCTCTATCACTTTGAAGCTGAACGTTTCGTCTCCGTCGTCGTCGTCTGCTCGAAGCTGGCCATTCCGCTCCATCATTTTCCATGAAGCATCAGCATCCTCCGTCGCGTCCTCAGTCTCCGTTCAGCGTACTCCGACCATCTCTTTCTGCCTCTGTCTGGCTCAGGTGTAG

mRNA sequence

ATGGAATCTCAGTGTCAAACCACCGCCCATCTACGTTCGAACATCATGCTACCGGCAGCGTCTCTCTCTATCACTTTGAAGCTGAACGTTTCGTCTCCGTCGTCGTCGTCTGCTCGAAGCTGGCCATTCCGCTCCATCATTTTCCATGAAGCATCAGCATCCTCCGTCGCGTCCTCAGTCTCCGTTCAGCGTACTCCGACCATCTCTTTCTGCCTCTGTCTGGCTCAGGTGTAG

Coding sequence (CDS)

ATGGAATCTCAGTGTCAAACCACCGCCCATCTACGTTCGAACATCATGCTACCGGCAGCGTCTCTCTCTATCACTTTGAAGCTGAACGTTTCGTCTCCGTCGTCGTCGTCTGCTCGAAGCTGGCCATTCCGCTCCATCATTTTCCATGAAGCATCAGCATCCTCCGTCGCGTCCTCAGTCTCCGTTCAGCGTACTCCGACCATCTCTTTCTGCCTCTGTCTGGCTCAGGTGTAG

Protein sequence

MESQCQTTAHLRSNIMLPAASLSITLKLNVSSPSSSSARSWPFRSIIFHEASASSVASSVSVQRTPTISFCLCLAQV*
Homology
[Close]
BLAST of CSPI03G21710.1 vs. ExPASy TrEMBL
Match: A0A0A0LAY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G333850 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.3e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 16 MLPAASLSITLKLNVSSPSSSSARSWPFRSIIFHEASASSVASSVSVQRTPTISFCLCLA 75
          MLPAASLSITLKLNVSSPSSSSARSWPFRSIIFHEASASSVASSVSVQRTPTISFCLCLA
Sbjct: 1  MLPAASLSITLKLNVSSPSSSSARSWPFRSIIFHEASASSVASSVSVQRTPTISFCLCLA 60

Query: 76 Q 77
          Q
Sbjct: 61 Q 61

[Close]
BLAST of CSPI03G21710.1 vs. NCBI nr
Match: KGN57827.1 (hypothetical protein Csa_010653 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 16 MLPAASLSITLKLNVSSPSSSSARSWPFRSIIFHEASASSVASSVSVQRTPTISFCLCLA 75
          MLPAASLSITLKLNVSSPSSSSARSWPFRSIIFHEASASSVASSVSVQRTPTISFCLCLA
Sbjct: 1  MLPAASLSITLKLNVSSPSSSSARSWPFRSIIFHEASASSVASSVSVQRTPTISFCLCLA 60

Query: 76 Q 77
          Q
Sbjct: 61 Q 61

The following BLAST results are available for this feature:
BLAST of CSPI03G21710.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G21710.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAY26.3e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G333850 PE=4 SV=1[more]
BLAST of CSPI03G21710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57827.11.3e-21100.00hypothetical protein Csa_010653 [Cucumis sativus][more]
BLAST of CSPI03G21710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G21710CSPI03G21710gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G21710.1.cds2CSPI03G21710.1.cds2CDS
CSPI03G21710.1.cds1CSPI03G21710.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G21710.1CSPI03G21710.1-proteinpolypeptide